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Marine and Freshwater Research Marine and Freshwater Research Society
Advances in the aquatic sciences
Table of Contents
Marine and Freshwater Research

Marine and Freshwater Research

Volume 67 Number 12 2016

MF15221Estuarine fishes of the South Alligator River, Kakadu National Park, northern Australia

Bradley J. Pusey, Mark J. Kennard, Helen K. Larson, Quentin Alsop, Michael Hammer and Duncan J. Buckle
pp. 1797-1812

The estuarine fish fauna of the South Alligator River was sampled by beam trawl in both wet and dry seasons. Species richness was greatest in the lower estuary and more species were detected during the wet season. Temporal change in assemblage structure was associated with seasonal variation in discharge concordant with changes in salinity and productivity. Sciaenidae and Engraulidae dominated species richness and abundance overall although the species involved changed between seasons.

MF15198Contrasting and complex evolutionary histories within the terapontid grunter genus Hephaestus revealed by nuclear and mitochondrial genes

Bradley J. Pusey, Andrew Bentley, Damien Burrows, Colton Perna, Aaron Davis and Jane Hughes
pp. 1813-1825

Contrasting evolutionary histories may be revealed by mitochondrial and nuclear information. Mitochondrial data suggested that the widespread sooty grunter (Hephaestus fuliginosus) comprised three separate species; however, nuclear information revealed it to be one species only. The phylogeny revealed by mitochondrial data was strongly influenced by historical hybridisation within Hephaestus. Both sources of genetic information indicated a need for a revision of Terapontidae.

MF14408Changes in discharge affect more surface than subsurface breakdown of organic matter in a mountain stream

Libe Solagaistua, Maite Arroita, Ibon Aristi, Aitor Larrañaga and Arturo Elosegi
pp. 1826-1834

Freshwater ecosystems are particularly vulnerable to the increasingly more frequent discharge fluctuations worldwide. Water depth and velocity modifications in streams affect the biota and the processes this biota is involved in. We have shown that the wet subsurface area of the stream can maintain organic matter decomposition rates along those discharge fluctuations, attenuating the effect on the total, reach scale, decomposition.


The use of different structural woody habitats, distance to bank and the interaction between habitats and distance to bank was investigated for Murray cod and trout cod in the mid Murray river, Australia. The study found that both species increased in abundance when structural woody habitat with hollows was present. However, distance to bank also played an important role in abundances, which has important relevance for stream managers.

MF15246Predicting natural instream woody-habitat loads across large river networks

Adrian Kitchingman, Zeb Tonkin, Renae M. Ayres, Jarod Lyon, Justin C. Stout, Ian D. Rutherfurd and Paul Wilson
pp. 1844-1852

Knowledge of natural or pre-disturbance instream woody-habitat (IWH) loads is useful to guide such restoration programs; however, such datasets are often unavailable. In the present study, natural IWH loads were mapped along 105 km of undisturbed rivers in south-eastern Australia then modelled for all major Victorian rivers. Distinct IWH-loading trends were noticeable over larger spatial scales. Eastern Victoria showed relatively lower natural IWH loads than did western Victoria.

MF14281How water level management affects cladoceran assemblages in lakes lateral to a reservoir

José Roberto Debastiani-Júnior and Marcos Gomes Nogueira
pp. 1853-1861

The effects of operational water level depletion on cladocerans from two lakes bordering a Brazilian run-of-river reservoir were studied. Cladocera showed different responses depending on the connection between lake and reservoir. It is proposed that continuous application of management may lead to a shift in the steady-state equilibrium of the system and loss of diversity.


Oxygen Minimum Zones (OMZs) strongly affect the distribution of megafauna. Bathymetric and seasonal patterns of distribution of decapod crustaceans were studied on the continental slopes off the Mexican Pacific, under the largest OMZ of the world. Bathymetric patterns in community composition were related to the swimming capacity and feeding strategies, and seasonal patterns were related to the community size structure. Oxygen, temperature and food were important drivers of those patterns.


The aim of the present study was to analyse the movement, feeding and case-building behaviours of Phylloicus in the presence of a likely decapod predator, Aegla longirostri. The study demonstrated that caddisfly is able to detect the presence of the predator and modify its activities. It increases its chances of survival by building its case of more resistant materials and by reducing its movement.

MF15110The coral communities of Yongle atoll: status, threats and conservation significance for coral reefs in South China Sea

Meixia Zhao, Kefu Yu, Qi Shi, Hongqiang Yang, Bernhard Riegl, Qiaomin Zhang, Hongqiang Yan, Tianran Chen, Guohui Liu and Ziyun Lin
pp. 1888-1896

The South China Sea (SCS) is an area of extensive coral reef development, yet the understanding on the coral reefs of this region is still low. We analysed the coral communities of Yongle atoll, the biggest atoll in the Xisha Islands, central South China Sea. This baseline investigation highlighted the ecological value of these reefs. They should receive much more scientific and conservation attention.

MF15129Diversity of ammonia-oxidising bacteria and archaea in seven different estuarine sediments from Poyang Lake

Ping Sheng, Yizun Yu, Xiaojuan Tian, Dongsheng Wang, Zhihong Zhang and Jiannan Ding
pp. 1897-1905

Poyang Lake is the largest fresh water lake in China. However, nitrogen levels of the lake are increasing because of industrialisation and urbanisation, threatening the stability of the overall ecosystem around the lake areas. Our study indicated that the diversity of ammonia-oxidising bacterial and archaeal communities varied among the different estuaries, and several environmental factors significantly affected those microbial diversities.

MF15170Potential invasions of phytoplankton in ship ballast water at South Korean ports

Bonggil Hyun, Kyoungsoon Shin, Min-Chul Jang, Pung-Guk Jang, Woo-Jin Lee, Chul Park and Keun-Hyung Choi
pp. 1906-1917

The survival and growth of ballast water-mediated phytoplankton communities was assessed, taking into account the specific growth rate, time delay for growth and initial dispersal. Most invasions appeared to fail at the initial dispersal phase. However, they could grow fast enough to overcome the initial dispersal phase if they were dispersed in highly eutrophic waters.


After significant benthic community change following a major flood event, sediment–water fluxes were measured to assess the potential of sediments to support the growth of Lyngbya majuscula. The results show that intermittent periods of oxygen depletion can trigger benthic releases of biologically significant amounts of iron that could support the initiation and growth of L. majuscula blooms.

MF15180Inherent variation in carbon and nitrogen isotopic assimilation in the freshwater macro-invertebrate Cherax destructor

Debashish Mazumder, Li Wen, Mathew P. Johansen, Tsuyoshi Kobayashi and Neil Saintilan
pp. 1928-1937

A laboratory based feeding experiment was conducted to examine how well freshwater macro-invertebrate muscle tissues isotopic ratios reflect the variability of various diet types and diet combinations they are fed. The study provides experimental evidence of individual variability in dietary assimilation. The results help interpret the trophic ecology of individuals feeding on the same or similar diets in the food web.

MF15158Age- and sex-dependent changes in morphometric and metabolic variables in the long-lived freshwater mussel Diplodon chilensis

Maria S. Yusseppone, Betina J. Lomovasky, Carlos M. Luquet, Maria C. Ríos de Molina and Iara Rocchetta
pp. 1938-1947

The aging process in long-lived bivalves could affect metabolic variables. The aim of this study was to analyse possible changes in metabolic and morphometric variables over the lifetime of the freshwater mussel Diplodon chilensis. We propose an age-range (20–30 years old) that would be better suited for bioremediation strategies and would ensure an enhancement of the water and sediment cleansing in Patagonian freshwater bodies.

MF15233Shell shape as indicator of pollution in marine gastropods affected by imposex

M. A. Primost, G. Bigatti and F. Márquez
pp. 1948-1954

Geometric morphometrics of marine gastropods allow detecting whether the imposex incidence associated with TBT pollution (neoformation of penis in females) is related to shell-shape variation. This non-destructive technique could help monitor polluted areas without sacrificing animals through the use of gastropod shells as indicators.

MF15307Species composition and hybridisation of mussel species (Bivalvia: Mytilidae) in Australia

Emi S. Ab Rahim, Thuy T. T. Nguyen, Brett Ingram, Cynthia Riginos, Kim J. Weston and Craig D. H. Sherman
pp. 1955-1963

The taxonomic status of mussels belonging to the genus Mytilus is explored for several Australian populations. The use of nuclear and mitochondrial genetic markers show that the majority (98.5%) of individuals are M. galloprovincialis. The analysis also revealed that southern and northern hemisphere haplotypes are present, suggesting the introduction of non-native M. galloprovincialis lineages into Australia.

MF15320Wild populations of Sydney rock oysters differ in their proteomic responses to elevated carbon dioxide

E. L. Thompson, L. Parker, V. Amaral, M. J. Bishop, W. A. O'Connor and D. A. Raftos
pp. 1964-1972

Much of the CO2 released into the atmosphere from burning fossil fuels is being absorbed by the oceans changing the pH and causing it to become more acidified. As a consequence, marine organisms are likely to exhibit many changes, with shelled organisms such as oysters being particularly susceptible. This research suggests that the local environments from which oysters originate may affect their capacity to respond to ocean acidification.


This paper provides basic information on the age, growth and maturation of S. oualaniensis in the equatorial waters of the ETPO, by using statolith microstructure analysis. The study improves our knowledge of the key life-history and population parameters for S. oualaniensis in the less studied ETPO waters and helps in the assessment and management of this important species.


Estimates of age and growth are important to fish stock assessments aimed at fishery sustainability, but for Pacific cod (Gadus macrocephalus) longevity varies by a factor of 3. One scenario describes a slow-growing fish with a lifespan exceeding 30 years, while the other is fast growing to a maximum age near 10 years. Lead–radium dating revealed that the old-fish scenario is not valid.

MF15189Evaluating potential sources of variation in Chironomidae catch rates on sticky traps

Joshua T. Smith, Jeffrey D. Muehlbauer and Theodore A. Kennedy
pp. 1987-1990

This study answers practical questions regarding sticky trap sampling artefacts. We evaluated whether catch rates and sex ratios of Chironomidae were affected by spraying traps with insecticide, placing traps at different heights above ground, and placing traps at different locations within a terrestrial habitat patch. Our results inform whether these variables warrant consideration in future sticky trap studies.

MF15300Photobiology of the zoanthid Zoanthus sociatus in intertidal and subtidal habitats

Miguel C. Leal, Igor C. S. Cruz, Carlos R. Mendes, Ricardo Calado, Ruy K. P. Kikuchi, Rui Rosa, Amadeu M. V. M. Soares, João Serôdio and Rui J. M. Rocha
pp. 1991-1997

We investigated the photobiology of a symbiotic zoanthid inhabiting different tidal environments: subtidal, intertidal pools and intertidal areas exposed to air during low tide. Results show significant differences in symbiont cell density, pigment content and photochemical efficiency among tidal habitats. These findings suggest that aerial exposure conditions affect photochemical processes but have no dramatic consequences such as bleaching.

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