Free Standard AU & NZ Shipping For All Book Orders Over $80!
Register      Login
Marine and Freshwater Research Marine and Freshwater Research Society
Advances in the aquatic sciences
RESEARCH ARTICLE

Estuarine fishes of the South Alligator River, Kakadu National Park, northern Australia

Bradley J. Pusey A G , Mark J. Kennard A , Helen K. Larson B C D , Quentin Alsop E , Michael Hammer B and Duncan J. Buckle F
+ Author Affiliations
- Author Affiliations

A Australian Rivers Institute, Griffith University, Kessels Road, Nathan, Qld 4111, Australia.

B Museum and Art Gallery of the Northern Territory, 19 Conacher Street, Darwin, NT 0820, Australia.

C Museum of Tropical Queensland, 70-120 Flinders Street, Townsville, Qld 4810, Australia.

D School of Marine and Tropical Biology, 1 James Cook Drive, James Cook University, Qld 4781, Australia.

E Department of Primary Industry and Fisheries, Berrimah Road, Berrimah, NT 0828, Australia.

F Charles Darwin University, Ellengowan Drive, Casuarina, NT 0801, Australia.

G Corresponding author. Email: bpusey@westnet.com.au

Marine and Freshwater Research 67(12) 1797-1812 https://doi.org/10.1071/MF15221
Submitted: 9 June 2015  Accepted: 15 September 2015   Published: 24 November 2015

Abstract

Estuaries are recognised globally as areas of high production, diversity and high economic value. Exploitation of the economic potential of estuaries and attendant infrastructural development plus expansion of human populations has resulted in degradation of estuaries worldwide. Many estuaries of northern Australia, in contrast, remain in good ecological condition. The estuarine fish fauna of the South Alligator River, Kakadu region of northern Australia was investigated to determine seasonal and spatial variation in composition. Beam trawls were used at 94 locations over the wet and dry seasons of 2012. In total, 81 taxa were collected, 26 of which had not previously been recorded in the river. Sciaenidae and Engraulidae dominated species richness and abundance. Samples were heterogeneous in terms of composition and abundance in a manner unrelated to any measured aspect of the habitat over which trawls occurred. Species richness was higher in the lower estuary than the upper estuary and more species were detected during the wet season. Turnover in assemblage structure between sampling occasions was associated with seasonal variation in discharge concordant with changes in salinity and potentially productivity. Compositional variation was largely ascribed to differential spawning phenology of adults and tolerance to fluctuating salinity. The Kakadu region supports a rich fish fauna moderately distinct from that observed elsewhere in the Northern Territory. Pronounced temporal turnover in assemblage structure and spatial variation at a variety of scales (i.e. within samples, and within and between rivers) collectively pose a challenge to management in light of ongoing and proposed development of the water resources of northern Australia, including its estuaries.

Additional keywords: assemblage structure, estuarine fishes, productivity, salinity.


References

Anderson, M. J., Gorley, R. N., and Clarke, K. R. (2008). ‘PERMANOVA for PRIMER: Guide to Software and Statistical Methods.’ (PRIMER–E Ltd.: Plymouth.)

Barletta, M., Barletta-Bergan, A., Saint-Paul, U., and Hubold, G. (2005). The role of salinity in structuring the fish assemblages in a tropical estuary. Journal of Fish Biology 66, 45–72.
The role of salinity in structuring the fish assemblages in a tropical estuary.Crossref | GoogleScholarGoogle Scholar |

Blaber, S. J. (2000). ‘Tropical Estuarine Fishes – Ecology, Exploitation and Conservation.’ (Blackwell Science: Oxford, UK.)

Blaber, S. J. M., Brewer, D. T., and Salini, J. P. (1989). Species composition and biomasses of fishes in different habitats of a tropical northern Australian estuary: their occurrence in the adjoining sea and estuarine dependence. Estuarine, Coastal and Shelf Science 29, 509–531.
Species composition and biomasses of fishes in different habitats of a tropical northern Australian estuary: their occurrence in the adjoining sea and estuarine dependence.Crossref | GoogleScholarGoogle Scholar |

Blaber, S. J. M., Salini, J. P., and Brewer, D. T. (1990). Checklist of fishes of Albatross Bay and the Embley estuary, north-eastern Gulf of Carpentaria. CSIRO Marine Laboratories Report Series 210.Cleveland, Qld.

Bulger, A. J., Hayden, B. P., Monaco, M. E., Nelson, D. M., and McCormick-Ray, M. G. (1993). Biologically-based estuarine salinity zones derived from a multivariate analysis. Estuaries 16, 311–322.
Biologically-based estuarine salinity zones derived from a multivariate analysis.Crossref | GoogleScholarGoogle Scholar |

Burford, M. A., Revill, A. T., Palmer, D. W., Clementson, L., Robson, B. J., and Webster, I. T. (2011). River regulation alters drivers of primary productivity along a tropical river-estuary system. Marine and Freshwater Research 62, 141–151.
| 1:CAS:528:DC%2BC3MXitlejt7w%3D&md5=eea3e7c331a67ecb63b48bf771dbb7b2CAS |

Burrows, D., Pusey, B., Perna, C., Kennard, M., and Veitch, V. (2008). Northern Australia Freshwater Fish (NAFF) Atlas. Available at https://research.jcu.edu.au/tropwater/fishatlas/ [Verified 5 October 2015]

Clarke, R. K., Tweedley, J. R., and Valesini, F. J. (2014). Simple shade plots aid better long-term choices of data pre-treatment in multivariate assemblage studies. Journal of the Marine Biological Association of the United Kingdom 94, 1–16.
Simple shade plots aid better long-term choices of data pre-treatment in multivariate assemblage studies.Crossref | GoogleScholarGoogle Scholar |

Costanza, R., d’Arge, R., de Groot, R., Farber, S., Grasso, M., Hannon, B., Limburg, K., Naeem, S., O’Neill, R. V., Paruelo, J., Raskin, R. G., Sutton, P., and van den Belt, M. (1997). The value of the world’s ecosystem services and natural capital. Nature 387, 253–260.
The value of the world’s ecosystem services and natural capital.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK2sXjtlShtbs%3D&md5=25828f5b7a831e14a9c671e6ca22d945CAS |

Cyrus, B. P., and Blaber, S. J. M. (1992). Turbidity and salinity in a tropical Australian estuary and their influence on fish distribution. Estuarine, Coastal and Shelf Science 35, 545–563.
Turbidity and salinity in a tropical Australian estuary and their influence on fish distribution.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK3sXis1Smsbg%3D&md5=c319b57a773a70bec309e94df0ca88b1CAS |

Douglas, M., Jackson, S., Pusey, B., Kennard, M., and Burrows, D. (2011). Northern futures: threats and opportunities for freshwater ecosystems. Chapter 13 In ‘Aquatic Biodiversity of the Wet-Dry Topics of Northern Australia: Patterns, Threats and Future’. (Ed. B. J. Pusey.) pp. 203–220. (Charles Darwin University Press: Darwin, NT.)

Drinkwater, K. F., and Frank, K. T. (1994). Effects of river regulation and diversion on marine fish and invertebrates. Aquatic Conservation: Marine and Freshwater Ecosystems 4, 135–151.
Effects of river regulation and diversion on marine fish and invertebrates.Crossref | GoogleScholarGoogle Scholar |

Guest, M. A., Connolly, R. M., and Loneragan, N. R. (2003). Seine nets and beam trawls compared by day and night for sampling fish and crustaceans in shallow seagrass habitat. Fisheries Research 64, 185–196.
Seine nets and beam trawls compared by day and night for sampling fish and crustaceans in shallow seagrass habitat.Crossref | GoogleScholarGoogle Scholar |

Halliday, I. A., Robins, J. B., Mayer, D. G., Staunton-Smith, J., and Sellin, M. J. (2008). Effects of freshwater flow on the year-class strength of a non-diadromous estuarine finfish, king threadfin (Polydactylus macrochir), in a dry-tropical estuary. Marine and Freshwater Research 59, 157–164.
Effects of freshwater flow on the year-class strength of a non-diadromous estuarine finfish, king threadfin (Polydactylus macrochir), in a dry-tropical estuary.Crossref | GoogleScholarGoogle Scholar |

Hermoso, V., Kennard, M., Pusey, B., and Douglas, M. (2011). Identifying priority areas for the conservation of freshwater biodiversity. Chapter 9. In ‘Aquatic Biodiversity in Northern Australia: Patterns, Threats and Future’. (Ed. B. J. Pusey.) pp. 133–149. (Charles Darwin University Press: Darwin, NT)

Ikejima, K., Tongnunui, P., Medej, T., and Taniuchi, T. (2003). Juvenile and small fishes in a mangrove estuary in Trang Province, Thailand: seasonal and habitat differences. Estuarine, Coastal and Shelf Science 56, 447–457.
Juvenile and small fishes in a mangrove estuary in Trang Province, Thailand: seasonal and habitat differences.Crossref | GoogleScholarGoogle Scholar |

Kennard, M. J., Pusey, B. J., Olden, J. D., Mackay, S. J., Stein, J. L., and Marsh, N. (2010a). Classification of natural flow regimes in Australia to support environmental flow management. Freshwater Biology 55, 171–193.
Classification of natural flow regimes in Australia to support environmental flow management.Crossref | GoogleScholarGoogle Scholar |

Kennard, M. J., Pusey, B. J., Boyden, J., Leigh, C., Bayliss, P., and Georges, A. (2010b). Compilation of species distribution data sets for use as biodiversity surrogates. pp. 50–58. In ‘Identifying High Conservation Value Aquatic Ecosystems in Northern Australia’. (Ed. M. J. Kennard.) Final Report for the Department of Environment, Water, Heritage and the Arts and the National Water Commission. Tropical Rivers and Coastal Knowledge (TRaCK) Commonwealth Environmental Research Facility, Australian Rivers Institute, Griffith University.

Larson, H. K. (1997). Report to Parks Australia North, on the estuarine fish inventory of Kakadu National Park, Northern Territory, Australia. MAGNT Research Report number 5, Darwin.

Larson, H. K. (1999). Report to Parks Australia North, on estuarine fish monitoring of Kakadu National Park, Northern Territory, Australia. Report by Museum and Art Gallery of the Northern Territory, Darwin.

Larson, H. K. (2000). Report to Parks Australia North, on estuarine fish monitoring of Kakadu National Park, Northern Territory, Australia. Report by Museum and Art Gallery of the Northern Territory, Darwin.

Larson, H. K. (2002). Report to Parks Australia North, on estuarine fish monitoring of Kakadu National Park, Northern Territory, Australia. Report by Museum and Art Gallery of the Northern Territory, Darwin.

Larson, H. K. (2008). Weber’s mudskipper Periophthalmus weberi: new record for the Daly River. Northern Territory Naturalist 20, 19–21.

Larson, H. K., Williams, R. S., and Hammer, M. P. (2013). An annotated checklist of the fishes of the Northern Territory, Australia. Zootaxa 3696, 1–293.
An annotated checklist of the fishes of the Northern Territory, Australia.Crossref | GoogleScholarGoogle Scholar | 26079024PubMed |

Ley, J. A., and Halliday, I. A. (2007). Diel variation in mangrove fish abundances and trophic guilds of northeastern Australian estuaries with a proposed trophodynamic model. Bulletin of Marine Science 80, 681–720.

Martin, T. J. (1988). Interaction of salinity and temperature as a mechanism for spatial separation of three co-existing species of Ambassidae (Cuvier) (Teleostei) in estuaries on the south east coast of Africa. Journal of Fish Biology 33, 9–15.
Interaction of salinity and temperature as a mechanism for spatial separation of three co-existing species of Ambassidae (Cuvier) (Teleostei) in estuaries on the south east coast of Africa.Crossref | GoogleScholarGoogle Scholar |

Melville, A. J., and Connelly, R. M. (2005). Food webs supporting fish over subtropical mudflats are based on transported organic matter not in situ microalgae. Marine Biology 148, 363–371.
Food webs supporting fish over subtropical mudflats are based on transported organic matter not in situ microalgae.Crossref | GoogleScholarGoogle Scholar |

Neil, D. T., Orpin, A. R., Ridd, P. V., and Yu, B. (2002). Sediment yield and impacts from river catchments to the Great Barrier Reef lagoon: a review. Marine and Freshwater Research 53, 733–752.
Sediment yield and impacts from river catchments to the Great Barrier Reef lagoon: a review.Crossref | GoogleScholarGoogle Scholar |

NLWRA (2002). ‘National Land and Water Resources Audit: Australian Catchment, River and Estuary Assessment.’ (Land and Water Australia: Canberra.)

Pusey, B. J. (2011). ‘Aquatic Biodiversity in Northern Australia: Patterns, Threats and Future.’ (Charles Darwin University Press: Darwin, NT.)

Pusey, B., Kennard, M., Burrows, D., Perna, C., Kyne, P., Cook, B., and Hughes, J. (2011a). Freshwater fish. Chapter 6. In ‘Aquatic Biodiversity in Northern Australia: Patterns, Threats and Future’. (Ed. B. J. Pusey.) pp. 71–92. (Charles Darwin University Press: Darwin, NT.)

Pusey, B., Warfe, D., Townsend, S., Douglas, M., Burrows, D., Kennard, M., and Close, P. (2011b). Condition, impacts and threats to aquatic biodiversity. Chapter 10. In ‘Aquatic Biodiversity in Northern Australia: Patterns, Threats and Future’. (Ed. B. J. Pusey.) pp. 151–172. (Charles Darwin University Press: Darwin, NT.)

Robertson, A. I., and Blaber, S. J. M. (1992). Plankton, epibenthos and fish communities. In ‘Tropical Mangrove Ecosystems’. (Eds A. I. Robertson and D. M. Alongi.) pp. 173–224. (American Geophysical Union: Washington, DC.)

Robins, J. B., Halliday, I. A., Staunton-Smith, J., Mayer, D. J., and Sellin, N. J. (2005). Freshwater-flow requirements of estuarine fisheries in tropical Australia: a review of the state of knowledge and application of a suggested approach. Marine and Freshwater Research 56, 343–360.
Freshwater-flow requirements of estuarine fisheries in tropical Australia: a review of the state of knowledge and application of a suggested approach.Crossref | GoogleScholarGoogle Scholar |

Sasaki, K. (2001). Sciaenidae. Croakers (drums). In ‘FAO Species Identification Guide for Fishery Purposes. The Living Marine Resources of the Western Central Pacific’, vol. 5, pp. 2791–3380. (Food and Agriculture Organisation of the United Nations: Rome.)

Schlacher, T. A., Skilligton, A. J., Connolly, R. M., Robinson, W., and Gaston, T. F. (2008). Coupling between marine plankton and freshwater flow in the plumes off a small estuary. International Review of Hydrobiology 93, 641–658.
Coupling between marine plankton and freshwater flow in the plumes off a small estuary.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXhtFyitbg%3D&md5=f4807bb6a1f76a7d23b1ed4f774f722bCAS |

Sheaves, M. (1998). Spatial patterns in estuarine fish faunas in tropical Queensland: a reflection of interaction between long-term physical and biological processes. Marine and Freshwater Research 49, 31–40.
Spatial patterns in estuarine fish faunas in tropical Queensland: a reflection of interaction between long-term physical and biological processes.Crossref | GoogleScholarGoogle Scholar |

Sheaves, M. (2006). Scale-dependent variation in composition of fish fauna among sandy tropical estuarine embayments. Marine Ecology Progress Series 310, 173–184.
Scale-dependent variation in composition of fish fauna among sandy tropical estuarine embayments.Crossref | GoogleScholarGoogle Scholar |

Tongnunui, P., Ikejima, K., Yamane, T., Horonuichi, M., Medej, T., Sano, M., Korokura, H., and Taniuchi, T. (2002). Fish fauna of the Sikao creek mangrove estuary, Trang, Thailand. Fisheries Science 68, 10–17.
Fish fauna of the Sikao creek mangrove estuary, Trang, Thailand.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD38Xis1Oit7w%3D&md5=441e6dee2e3a79eb2ab9152fbf5ee682CAS |

Vance, D. J., Haywood, M. D. E., Heales, D. S., Kenyon, R. A., and Loneragan, N. R. (1998). Seasonal and annual variation in abundance of postlarval and juvenile banana prawns Penaeus merguiensis and environmental variation in two estuaries in tropical northeastern Australia: a six year study. Marine Ecology Progress Series 163, 21–36.
Seasonal and annual variation in abundance of postlarval and juvenile banana prawns Penaeus merguiensis and environmental variation in two estuaries in tropical northeastern Australia: a six year study.Crossref | GoogleScholarGoogle Scholar |

Vidthayanon, C., and Premcharoen, S. (2002). The status of estuarine fish diversity in Thailand. Marine and Freshwater Research 53, 471–478.
The status of estuarine fish diversity in Thailand.Crossref | GoogleScholarGoogle Scholar |

Wang, P., and Chappell, J. (2001). Foraminifera as Holocene environmental indicators in the South Alligator River, Northern Australia. Quaternary International 83–85, 47–62.
Foraminifera as Holocene environmental indicators in the South Alligator River, Northern Australia.Crossref | GoogleScholarGoogle Scholar |

Wasson, R. J. (1994). Annual and decadal variation of sediment yield in Australia and some global comparisons. In ‘Variability in Stream Erosion and Sediment Transport, Symposium Proceedings’, December 1994, Canberra, ACT. (Eds L. J. Olive, R. J. Loughran, and J. A. Kesby.) IAHS Publication number 224, pp. 269–279. (International Association for Hydrological Science: Oxford, UK.)