The identification of QTLs for adult plant resistance to leaf scald in barley
Judy Cheong A B , Kevin Williams A and Hugh Wallwork AA Molecular Plant Breeding CRC, South Australian Research and Development Institute, PO Box 397, Adelaide, SA 5000, Australia.
B Corresponding author. Email: cheong.judy@saugov.sa.gov.au
Australian Journal of Agricultural Research 57(9) 961-965 https://doi.org/10.1071/AR05389
Submitted: 8 November 2005 Accepted: 18 April 2006 Published: 30 August 2006
Abstract
Barley leaf scald disease, caused by the fungal pathogen Rhynchosporium secalis, can be economically damaging, causing both yield losses and lower quality from reduced grain size. Most genetic studies of scald resistance have concentrated on seedling reactions either because of a lack of access to field screening resources or else because of the more definitive phenotype obtained at the seedling stage. However, understanding the genetics of adult plant resistance (APR) to leaf scald could help to produce more durable resistance to this disease. APR to leaf scald in a Chebec/Harrington population (120 doubled haploid (DH) lines) and a Mundah/Keel population (95 DH lines) was determined at Turretfield, South Australia, in 2004. Two different conditions of scald infection were used for Chebec/Harrington, natural infection and inoculation with 2 known scald isolates, whereas Mundah/Keel was inoculated with 2 known isolates. Quantitative trait loci (QTLs) for scald resistance were identified using a previously published Chebec/Harrington map. Three QTLs (on chromosomes 7HS, 7HL, and 6HS) were identified using the natural infection data and one QTL on chromosome 6HL using the inoculated plant data. Two QTLs were identified on chromosome 3HL and 6HS, respectively, using a partial map of Mundah/Keel. An unmapped Schooner/O’Connor population, consisting of 116 DH lines, was also phenotyped for adult plant resistance to scald using natural infection at Turretfield in 2001. Bulked-segregant analysis was used to identify molecular markers linked to a scald resistance locus in the barley cultivar O’Connor on chromosome 6HS, at the same location as the QTLs identified from Harrington and Keel. Six of the QTLs for APR to leaf scald identified in this study were co-located with previously identified seedling resistance genes.
Additional keywords: Rhynchosporium secalis, quantitative trait loci, barley leaf scald, molecular markers.
Acknowledgments
The authors thank Dr Ruth Genger for genotyping the AB30/Clipper BC3F2 population with chromosome 6H SSR markers. This work was partially funded by the Australian Grains Research and Development Corporation.
Abbott DC,
Burdon JJ, Brown AHD
(1991a) Genes for scald resistance from wild barley (Hordeum vulgare ssp spontaneum) and their linkage to isozyme markers. Euphytica 61, 225–231.
| Crossref | GoogleScholarGoogle Scholar |
Abbott DC,
Burdon JJ,
Jarosz AM,
Brown AHD,
Müller WJ, Read BJ
(1991b) The relationship between seedling infection types and field reactions to leaf scald in Clipper barley backcross lines. Australian Journal of Agricultural Research 42, 801–809.
| Crossref | GoogleScholarGoogle Scholar |
Abbott DC,
Lagudah ES, Brown AHD
(1995) Identification of RFLPs flanking a scald resistance gene on barley chromosome 6. Journal of Heredity 86, 152–154.
| PubMed |
Backes G,
Graner A,
Foroughi-Wehr B,
Fishbeck G,
Wenzel G, Jahoor A
(1995) Localization of quantitative trait loci (QTL) for agronomically important characters by the use of a RFLP map in barley (Hordeum vulgare L.). Theoretical and Applied Genetics 90, 294–302.
| Crossref | GoogleScholarGoogle Scholar |
Barr AR,
Karakousis A,
Lance RCM,
Logue SJ,
Manning S,
Chalmers KJ,
Kretschmer JM,
Boyd WJR,
Collins HM,
Roumeliotis S,
Coventry SJ,
Moody DB,
Read BJ,
Poulsen D,
Li CD,
Platz GJ,
Inkerman PA,
Panozzo JF,
Cullis BR,
Smith AB,
Lim P, Langridge P
(2003) Mapping and QTL analysis of the barley population Chebec × Harrington. Australian Journal of Agricultural Research 54, 1125–1130.
| Crossref | GoogleScholarGoogle Scholar |
Barua UM,
Chalmers KJ,
Hacket CA,
Thomas WTB,
Powell W, Waugh R
(1993) Identification of RAPD markers linked to Rhynchosporium secalis resistance locus in barley using near-isogenic lines and bulk segregant analysis. Heredity 71, 177–184.
| PubMed |
Bockelman HE,
Sharp EL, Eslick RF
(1977) Trisomic analysis of genes for resistance to scald and net blotch in several barley cultivars. Canadian Journal of Botany 55, 2142–2148.
Garvin DF,
Brown AHD,
Raman H, Read BJ
(2000) Genetic mapping of the barley Rrs14 scald resistance gene with RFLP, isozyme and seed storage protein markers. Plant Breeding 119, 193–196.
| Crossref | GoogleScholarGoogle Scholar |
Genger RK,
Nesbitt K,
Brown AHD,
Abbott DC, Burdon JJ
(2005) A novel barley scald resistance gene: genetic mapping of the Rrs15 scald resistance gene derived from wild barley, Hordeum vulgare ssp spontaneum. Plant Breeding 124, 137–141.
| Crossref | GoogleScholarGoogle Scholar |
Genger R,
Williams KJ,
Raman H,
Read BJ,
Wallwork H,
Burdon JJ, Brown ADH
(2003) Leaf scald resistance genes in Hordeum vulgare and Hordeum vulgare ssp. spontaneum: parallels between cultivated and wild barley. Australian Journal of Agricultural Research 54, 1335–1342.
| Crossref | GoogleScholarGoogle Scholar |
Graner A, Tekauz A
(1996) RFLP mapping in barley of a dominant gene conferring resistance to scald (Rhynchosporium secalis). Theoretical and Applied Genetics 93, 421–425.
| Crossref | GoogleScholarGoogle Scholar |
Jackson L,
Kahler AL,
Webster RK, Allard RW
(1978) Conservation of scald resistance in barley composite cross populations. Phytopathology 68, 645–650.
Jensen J,
Backes G,
Skinnes H, Giese H
(2002) QTLs for scald resistance in barley localised by a non-interval mapping procedure. Plant Breeding 121, 124–128.
| Crossref | GoogleScholarGoogle Scholar |
Khan TN, Crosbie GB
(1988) Effect of scald (Rhynchosporium secalis) infection on some quality characteristics of barley. Australian Journal of Experimental Agriculture 28, 783–785.
| Crossref | GoogleScholarGoogle Scholar |
Long NR,
Jefferies SP,
Warner P,
Karakousis A,
Kretschmer JM,
Hunt C,
Lim P,
Eckermann PJ, Barr AR
(2003) Mapping and QTL analysis of the barley population Mundah × Keel. Australian Journal of Agricultural Research 54, 1163–1171.
| Crossref | GoogleScholarGoogle Scholar |
Manly KF,
Cudmore RH, Meer JM
(2001) Map Manager QTX, cross-platform software for genetic mapping. Mammalian Genome 12, 930–932.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Patil V,
Bjørnstad Å, Mackey J
(2003) Molecular mapping of a new gene Rrs4
CI11549 for resistance to barley scald (Rhynchosporium secalis). Molecular Breeding 12, 169–183.
| Crossref | GoogleScholarGoogle Scholar |
Ramsay L,
Macaulay M,
degli Ivanissivich S,
MacLean K,
Cardle L,
Fuller J,
Edwards K,
Tuvesson S,
Morgante M,
Massari A,
Maesti E,
Marmiroli N,
Sjakste T,
Ganal M,
Powell W, Waugh R
(2000) A simple sequence repeat-based linkage map of barley. Theoretical and Applied Genetics 156, 1997–2005.
Sayed H,
Backes G,
Kayyal H,
Yahyaoui A,
Ceccarelli S,
Grando S,
Jahoor A, Baum M
(2004) New molecular markers linked to qualitative and quantitative powdery mildew and scald resistance genes in barley for dry areas. Euphytica 135, 225–228.
| Crossref | GoogleScholarGoogle Scholar |
Schaller CW
(1951) The effect of mildew and scald infection on yield and quality of barley. Agronomy Journal 43, 183–188.
Schweizer GF,
Baumer M,
Daniel G,
Rugel H, Röder MS
(1995) RFLP markers linked to scald (Rhynchosporium secalis) resistance gene Rh2 in barley. Theoretical and Applied Genetics 90, 920–924.
| Crossref | GoogleScholarGoogle Scholar |
Spaner D,
Shugar LP,
Choo TM,
Falak I,
Briggs KG,
Legge WG,
Falk DE,
Ullrich SE,
Tinker NA,
Steffenson BJ, Mather DE
(1998) Mapping of disease resistance loci in barley on the basis of visual assessment of naturally occurring symptoms. Crop Science 38, 843–850.
Vivar HE,
Burnett PA, Bowman JE
(1987) Barley breeding for multiple disease resistance. Barley Genetics V, 615–623.
Vos P,
Hogers R,
Bleeker M,
Reijans M,
va de Lee T,
Hornes M,
Freijter A,
Pot J,
Peleman J, Kuiper Mzabeau M
(1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 21, 4407–4414.
Williams KJ,
Taylor SP,
Bogacki P,
Pallotta M,
Bariana HS, Wallwork H
(2002) Mapping of the root lesion nematode (Pratylenchus neglectus) resistance gene Rlnn1 in wheat. Theoretical and Applied Genetics 104, 874–879.
| Crossref | GoogleScholarGoogle Scholar | PubMed |