Genetic main effect and genotype × environment interaction for cooking quality traits in a diallel set of Indica rice (Oryza sativa L.) varieties
Peyman Sharifi A , Hamid Dehghani A D , Ali Moumeni B and Mohammad Moghaddam CA Department of Plant Breeding, Faculty of Agriculture, Tarbiat Modares University, Tehran, PO Box 14115-336, Iran.
B Rice Research Institute of Iran (RRII), Amol 4619191951, Iran.
C Department of Plant Breeding, Faculty of Agriculture, Tabriz University, Tabriz 5166734684, Iran.
D Corresponding author. Email: dehghanr@modares.ac.ir
Crop and Pasture Science 61(6) 475-482 https://doi.org/10.1071/CP09309
Submitted: 27 October 2009 Accepted: 20 April 2010 Published: 1 June 2010
Abstract
Genetic main effects and genotype × environment (GE) interactions were determined for cooking quality traits of rice (Oryza sativa L.) using a complete diallel cross of seven. The field experiments were carried out over 2 years as a randomised complete block design with two replications. Amylose content (AC), gel consistency (GC) and gelatinisation temperature (GT) were affected by both genetic effects and GE interaction. Grain elongation (GEL) was found to be controlled by genetic main effects and general combining ability (GCA) × environment interaction. The high magnitude of GCA variances for all traits indicated that additive effects were more prominent in the determination of these characteristics. Narrow-sense heritabilities for AC, GT, GC and GEL were 61.21, 60.83, 29.98 and 52.29%, respectively. Among the genetic and GE interaction effects, GCA and GCA × environment were the main components for all traits. Relatively large narrow-sense heritabilities for AC, GT and GEL indicated that selection for these traits could be possible. However, due to the significance of genotype × year effects for AC, GT, and GEL genetic materials should be evaluated over several years in breeding programs.
Additional keywords: combining ability, cooking quality, genetic component, heritability, Indica rice.
Baker RJ
(1978) Issues in diallel analysis. Crop Science 18, 533–536.
Cagampang GB,
Perez CM, Juliano BO
(1973) A gel consistency test for eating quality of rice. Journal of the Science of Food and Agriculture 24, 1589–1594.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
PubMed |
Chang WL, Li WY
(1981) Inheritance of amylose content and gel consistency in rice. Botanical Bulletin of Academia Sinica 22, 35–47.
|
CAS |
Chen WH, Mo HD
(1996) Qualitative-quantitative analysis for inheritance of gelatinization temperature in Indica rice. Acta Agronomica Sinica 22, 385–391.
Chen JG, Zhu J
(1999) Genetic effects and genotype × environment interactions for cooking quality traits in Indica-Japonica crosses of rice (Oryza sativa L.). Euphytica 109, 9–15.
| Crossref | GoogleScholarGoogle Scholar |
Chen JG, Zhu J
(2002) Genetics effects for cooking quality characters in Indica-Japonica crosses of rice. Journal of Biomathematics 17, 226–234.
Chen BT,
Peng ZM, Xu Y
(1992) Genetic analysis of rice gelatinization temperature. Journal of Huazhong Agriculture University 11, 115–119.
Chen JG,
Zhu J, Zhang RC
(1998) Genetic analysis of fat content in Indica-Japonica inter-subspecific hybrid rice (Oryza sativa L.). Journal of Tropical and Subtropical Botany 6, 347–351.
|
CAS |
Faruq G,
Hadjimk M, Meisner CA
(2004) Inheritance of gelatinization temperature in rice. International Journal of Agriculture and Biology 6, 810–812.
Gardner CO, Eberhart SA
(1966) Analysis and interpretation of the variety cross diallel and related populations. Biometrics 22, 439–452.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
PubMed |
Graham R
(2002) A proposal for IRRI to establish a grain quality and nutrition research center. IRRI Discussion Paper Series 44, 1–18.
Gravois KA, Webb BD
(1997) Inheritance of long grain rice amylograph viscosity characteristics. Euphytica 97, 25–29.
| Crossref | GoogleScholarGoogle Scholar |
Griffing B
(1956a) A generalized treatment of the use of diallel crosses in quantitative inheritance. Heredity 10, 31–50.
| Crossref | GoogleScholarGoogle Scholar |
Griffing B
(1956b) Concepts of general and specific combining ability in relation to diallel crossing system. Australian Journal of Biological Sciences 9, 436–493.
Guo Y,
Mu P,
Liu J,
Lu Y, Li Z
(2007) QTL mapping and Q × E interactions of grain cooking and nutrient qualities in rice under upland and lowland environments. Journal of Genetics and Genomics 34, 420–428.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
He P,
Li SG,
Qian Q,
Ma YQ,
Li JZ,
Wang WM,
Chen Y, Zhu LH
(1999) Genetic analysis of rice grain quality. Theoretical and Applied Genetics 98, 502–508.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
Jin ZX,
Qian CR,
Yang J,
Liu HY, Jin XY
(2005) Effect of temperature at grain filling stage on activities of key enzymes related to starch synthesis and grain quality of rice. Rice Science 12, 261–266.
Juliano BO
(1971) A simplified assay for milled rice amylose. Cereal Science Today 16, 334–360.
Kumar I, Khush GS
(1987) Genetic analysis of different amylose levels in rice. Crop Science 27, 1167–1172.
Kuo YC,
Liu C,
Chang TM, Hsieh SC
(1985) Inheritance of quality and grain characteristics in Indica rice. Journal of Agricultural Research of China 34, 243–257.
|
CAS |
Lapitan VC,
Redoña ED,
Toshinori A, Brar DS
(2009) Mapping of quantitative trait loci using a doubled-haploid population from the cross of Indica and Japonica cultivars of rice. Crop Science 49, 1620–1628.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
Li X,
Mo HD,
Wang AM,
Xu CW,
Zhu YH, Yu HX
(1999) Genetic expression for quality traits of rice grain in Japonica hybrids. Chinese Journal of Rice Science 13, 197–204.
Lin J,
Shi C,
Wu M, Wu J
(2005) Analysis of genetic effects for cooking quality traits of Japonica rice across environments. Plant Science 168, 1501–1506.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
Little RR,
Hilder GB, Dawson EH
(1958) Differential effect of dilute alkali on 25 varieties of milled white rice. Cereal Chemistry 35, 111–126.
|
CAS |
McKenzie KS, Rutger JN
(1983) Genetic analysis of amylose content, alkali spreading score and grain dimensions in rice. Crop Science 23, 306–313.
|
CAS |
Nkori-kibanda JM, Luzi-Kihupi
(2007) Influence of genetic and genotype × environment interaction on quality of rice grain. African Crop Science Journal 15, 173–182.
Rabiei B,
Valizadeh M,
Ghareyazie B, Moghaddam M
(2004) Evaluation of selection indices for improving rice grain shape. Field Crops Research 89, 359–367.
| Crossref | GoogleScholarGoogle Scholar |
Savery MA, Ganesan J
(2003) Genetic analysis of kernel quality traits in rice. Madras Agricultural Journal 90, 224–227.
Shi CH, Zhu J
(1994) Analysis of seed and maternal genetic effects for characters of cooking quality in Indica rice. Chinese Journal of Rice Science 8, 129–134.
Shi CH,
Zhu J,
Zeng RC, Chen GL
(1997) Genetic and heterosis analysis for cooking quality traits of Indica rice in different environments. Theoretical and Applied Genetics 95, 294–300.
| Crossref | GoogleScholarGoogle Scholar |
Tang SX, Khush GS
(1993) Genetic studies on gel consistency of rice. Rice Abstracts 16, 159.
Teklewold A, Becker HC
(2005) Heterosis and combining ability in a diallel cross of Ethiopian mustard inbred lines. Crop Science 45, 2629–2635.
| Crossref | GoogleScholarGoogle Scholar |
Tomar JB
(1987) Analysis of genetic components of generation mean for some quality characters in rice. Oryza 24, 112–118.
Yan L, Hong D
(2004) Grain quality and genetic analysis of hybrids derived from different ecological types in Japonica rice (Oryza sativa). Rice Science 11, 165–170.
Yi XP, Cheng FY
(1992) Genetic effect of different cytoplasm types on rice cooking, milling and nutrient qualities in Indica type hybrid rice. Chinese Journal of Rice Science 6, 187–189.
Yichuan K, Stansel JW
(1997) Inheritance of quality and grain characteristic in Indica rice. Journal of Agricultural Research for China 46, 99–115.
Zhang Y,
Kang MS, Lamkey KR
(2005) DIALLEL-SAS05: a comprehensive program for Griffing’s and Gardner–Eberhart analyses. Agronomy Journal 97, 1097–1106.
| Crossref | GoogleScholarGoogle Scholar |
