Register      Login
Wildlife Research Wildlife Research Society
Ecology, management and conservation in natural and modified habitats
RESEARCH ARTICLE (Open Access)

Subfossils suggest worse-than-realised losses of small-bodied mammals in northern Australia

Vikram Vakil https://orcid.org/0000-0003-3684-4996 A * , Jonathan Cramb B , Gilbert Price A , Julien Louys C , John Stanisic B and Gregory E. Webb https://orcid.org/0000-0002-9206-978X A
+ Author Affiliations
- Author Affiliations

A School of the Environment, The University of Queensland, Brisbane, Qld 4072, Australia.

B Queensland Museum, Brisbane, Qld, Australia.

C Australian Research Centre for Human Evolution, Griffith University, Brisbane, Qld 4101, Australia.

* Correspondence to: vikram.vakil@uqconnect.edu.au

Handling Editor: Sarah Legge

Wildlife Research 52, WR24149 https://doi.org/10.1071/WR24149
Submitted: 12 September 2024  Accepted: 24 December 2024  Published: 16 January 2025

© 2025 The Author(s) (or their employer(s)). Published by CSIRO Publishing. This is an open access article distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND)

Abstract

Context

Examining Australia’s late Quaternary subfossil record can be valuable in assessing whether the current diversity of small-bodied mammals seen across some parts of northern Australia is ‘normal’. Such records are important for establishing baselines for measuring historic changes in communities today and into the future. These datasets are becoming increasingly important, given trajectories in current global climate change, and predicted habitat losses and other potential anthropogenic impacts.

Aims

The main aim of this study is to utilise the local subfossil record from north-eastern Australia to establish a natural baseline for assessing changes in small mammal communities post-European colonisation.

Methods

Subfossils of vertebrates and other taxa were recovered from surface deposits adjacent to cave entrances at Broken River, near Greenvale in north-eastern Queensland, and were subjected to taxonomic, taphonomic and statistical analyses. These were then compared with local faunal records from modern surveys to compare differences in faunal communities between past and present.

Key results

Radiocarbon dating showed that these subfossils are geologically young, dating to approximately the time of European colonisation. We provide evidence for the former presence of extinct species of hopping mice (Notomys spp.) and rabbit rats (Conilurus spp.) in the region. Additional locally extirpated taxa such as Cape York bandicoot (Isoodon peninsulae) and Shark Bay mouse (Pseudomys gouldii) demonstrated considerable range contractions since the deposits accumulated, compared with their current distribution. Independent evidence from subfossil land snails recovered from these deposits is, with two exceptions, all modern-day vine thicket, karst-dwelling species indicating a long-term maintenance of vine thicket habitat. Thus, the loss of several mammal species is unlikely to be the result of habitat loss.

Conclusions

Analysis of the surface deposits showed that local historic small-mammal communities were much more diverse than are the region’s extant faunas recorded by modern surveys. Many extinctions and extirpations evidently occurred prior to such faunas being recorded as local inhabitants of the region.

Implications

Our data suggested that post-European colonisation small-mammal losses are likely to be substantially worse than previously realised.

Keywords: conservation palaeontology, limestone caves, natural baselines, northern Australia, palaeoenvironment, severe losses, small mammals, subfossils.

References

AMTC (2022) The AMTC Australian Mammal Species List. Version 1.0. Australasian Mammal Taxonomy Consortium. Available at https://australianmammals.org.au/publications/amtc-species-list [accessed 19 April 2024]

Andrews P (1990) ‘Owls, caves and fossils: predation, preservation, and accumulation of small mammal bones in caves, with an analysis of the Pleistocene cave faunas from Westbury-sub-Mendip, Somerset, UK.’ (University of Chicago Press)

Baynes A, Jones B (1993) The mammals of Cape Range peninsula, north-western Australia. Records of the Western Australian Museum 45, 207-225.
| Google Scholar |

Baynes A, McDowell MC (2010) The original mammal fauna of the Pilbara biogeographic region of north-western Australia. Records of the Western Australian Museum 78, 285-298.
| Crossref | Google Scholar |

Beck RMD, Voss RS, Jansa SA (2022) Craniodental morphology and phylogeny of marsupials. Bulletin of the American Museum of Natural History 457, 1-352.
| Crossref | Google Scholar |

Brandle R, Pavey CR, Moseby KM, Young LI (2023) Plains mouse. In ‘Strahan’s mammals of Australia’, 4th edn. (Eds AM Baker, IC Gynther) pp. 448–449. (Reed New Holland Publishers: NSW, Australia)

Breed B, Ford F (2007) ‘Native mice and rats.’ (CSIRO: Melbourne, Vic, Australia)

Brock F, Higham T, Ditchfield P, Ramsey CB (2010) Current pretreatment methods for AMS radiocarbon dating at the Oxford Radiocarbon Accelerator Unit (Orau). Radiocarbon 52, 103-112.
| Crossref | Google Scholar |

Burbidge AA, McKenzie NL (1989) Patterns in the modern decline of Western Australia’s vertebrate fauna: causes and conservation implications. Biological Conservation 50, 143-198.
| Crossref | Google Scholar |

Chapman DA (2009) Australian Biodiversity Information Services Toowoomba, Australia Numbers of Living Species in Australia and the World, 2nd edn. Report for the Australian Biological Resources Study, Canberra, ACT, Australia.

Chesser RT (2009) ‘Systematics and taxonomy of Australian birds.’ (CSIRO: Melbourne, Vic, Australia)

Comay O, Dayan T (2018) What determines prey selection in owls? Roles of prey traits, prey class, environmental variables, and taxonomic specialization. Ecology and Evolution 8, 3382-3392.
| Crossref | Google Scholar | PubMed |

Coulson G (2009) Behavioural ecology of red and grey kangaroos: Caughley’s insights into individuals, associations and dispersion. Wildlife Research 36, 57-69.
| Crossref | Google Scholar |

Cramb J, Hocknull S (2010) New Quaternary records of Conilurus (Rodentia: Muridae) from eastern and northern Australia with the description of a new species. Zootaxa 2634, 41-56.
| Crossref | Google Scholar |

Davies HF, McCarthy MA, Firth RSC, Woinarski JCZ, Gillespie GR, Andersen AN, Rioli W, Puruntatameri J, Roberts W, Kerinaiua C, Kerinauia V, Womatakimi KB, Murphy BP (2018) Declining populations in one of the last refuges for threatened mammal species in northern Australia. Austral Ecology 43, 602-612.
| Crossref | Google Scholar |

Domínguez García ÁC, Laplana C, Sevilla P, Blain H-A, Zumajo NP, Benítez de Lugo Enrich L (2019) New data on the introduction and dispersal process of small mammals in southwestern Europe during the Holocene: Castillejo del Bonete site (southeastern Spain). Quaternary Science Reviews 225, 106008.
| Crossref | Google Scholar |

Fallon SJ, Fifield LK, Chappell JM (2010) The next chapter in radiocarbon dating at the Australian National University: status report on the single stage AMS. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms 268(7–8), 898-901.
| Crossref | Google Scholar |

Fernández-Jalvo Y, Andrews P, Denys C, Sesé C, Stoetzel E, Marin-Monfort D, Pesquero D (2016) Taphonomy for taxonomists: implications of predation in small mammal studies. Quaternary Science Reviews 139, 138-157.
| Crossref | Google Scholar |

Fusco DA, McDowell MC, Prideaux GJ (2016) Late-Holocene mammal fauna from southern Australia reveals rapid species declines post-European settlement: implications for conservation biology. The Holocene 26, 699-708.
| Crossref | Google Scholar |

Gibson LA (2011) The importance of incorporating imperfect detection in biodiversity assessments: a case study of small mammals in an Australian region. Diversity and Distributions 17, 613-623.
| Crossref | Google Scholar |

Gould J (1863) ‘The mammals of Australia,’ Vol. III. (The author: London)

Hammer Ø, Harper DAT, Ryan PD (2001) Past: paleontological statistics software package for education and data analysis. Palaeontologia Electronica 4, 1-9.
| Google Scholar |

Hocknull SA (2002) Comparative maxillary and dentary morphology of the Australian dragons (Agamidae: Squamata): a framework for fossil identification. Memoirs of the Queensland Museum 48, 125-145.
| Google Scholar |

Hogg AG, Heaton TJ, Hua Q, Palmer JG, Turney CSM, Southon J, Bayliss A, Blackwell PG, Boswijk G, Ramsey CB, Pearson C, Petchey F, Reimer P, Reimer R, Wacker L (2020) SHCal20 Southern Hemisphere calibration, 0–55,000 years cal BP. Radiocarbon 62, 759-778.
| Crossref | Google Scholar |

Johnson CN, Isaac JL (2009) Body mass and extinction risk in Australian marsupials: the ‘Critical Weight Range’ revisited. Austral Ecology 34, 35-40.
| Crossref | Google Scholar |

Knight F, Tyler M (2020) ‘Field guide to the frogs of Australia.’ (CSIRO: Melbourne, Vic, Australia)

Legge S, Rumpff L, Garnett ST, Woinarski JCZ (2023) Loss of terrestrial biodiversity in Australia: magnitude, causation, and response. Science 381, 622-631.
| Crossref | Google Scholar | PubMed |

Louys J, Cramb J, Ferguson K, Kemp J, Wood R, Miszkiewicz JJ, Dias Guimarães NR, Higgins P, Travouillon KJ, Hocknull SA, Webb GE, Price GJ (2023) Interim report on the vertebrate deposits recovered from the Capricorn Caves, Rockhampton, Queensland. Alcheringa: An Australasian Journal of Palaeontology 47, 562-589.
| Crossref | Google Scholar |

Lyman RL (1994) Quantitative units and terminology in zooarchaeology. American Antiquity 59, 36-71.
| Crossref | Google Scholar |

Marin-Monfort MD, Fagoaga A, García-Morato S, Ruíz Sánchez FJ, Mallol C, Hernández C, Galván B, Fernández-Jalvo Y (2021) Contribution of small mammal taphonomy to the last Neanderthal occupations at the El Salt site (Alcoi, southeastern Spain). Quaternary Research 103, 208-224.
| Crossref | Google Scholar |

Merrilees D, Porter JK (1979) ‘Guide to the identification of teeth and some bones on native land mammals occurring in the extreme south west of Western Australia.’ (Western Australian Museum: Perth, WA, Australia)

Morton SR, Baynes A (1985) Small mammal assemblages in arid Australia: a reappraisal. Australian Mammalogy 8, 159-169.
| Crossref | Google Scholar |

Murphy BP, Andersen AN, Parr CL (2016) The underestimated biodiversity of tropical grassy biomes. Philosophical Transactions of the Royal Society B: Biological Sciences 371, 20150319.
| Crossref | Google Scholar |

Neldner VJ, Niehus RE, Wilson BA, McDonald WJF, Ford AJ, Accad A (2023) The vegetation of Queensland: description of broad vegetation groups Version 6.0. Queensland Herbarium and Biodiversity Science. The State of Queensland, Department of Environment and Science, Qld, Australia.

Price GJ, Louys J, Smith GK, Cramb J (2019) Shifting faunal baselines through the Quaternary revealed by cave fossils of eastern Australia. PeerJ 6, e6099.
| Crossref | Google Scholar |

Price GJ, Cramb J, Louys J, Travouillon KJ, Pease EMA, Feng Y-X, Zhao J-X, Irvin D (2020) Late Quaternary fossil vertebrates of the Broken River karst area, northern Queensland, Australia. Records of the Australian Museum 72, 193-206.
| Crossref | Google Scholar |

Rhodes SE, Ziegler R, Starkovich BM, Conard NJ (2018) Small mammal taxonomy, taphonomy, and the paleoenvironmental record during the Middle and Upper Paleolithic at Geißenklösterle Cave (Ach Valley, southwestern Germany). Quaternary Science Reviews 185, 199-221.
| Crossref | Google Scholar |

Roycroft E, MacDonald AJ, Moritz C, Moussalli A, Portela Miguez R, Rowe KC (2021) Museum genomics reveals the rapid decline and extinction of Australian rodents since European settlement. Proceedings of the National Academy of Sciences 118(27), e2021390118.
| Crossref | Google Scholar |

Russell-Smith J, Edwards AC, Woinarski JCZ, McCartney J, Kerin S, Winderlich S, Murphy BP, Watt FA (2009) Fire and biodiversity monitoring for conservation managers. In ‘Culture, ecology and economy of fire management in north Australian savannas: rekindling the wurrk tradition’. (Eds J Russell-Smith, P Whitehead, P Cooke) pp. 247–285. (CSIRO Publishing: Melbourne, Vic, Australia)

Schloss CA, Nunez TA, Lawler JJ (2012) Dispersal will limit ability of mammals to track climate change in the Western Hemisphere. Proceedings of the National Academy of Sciences 109, 8606-8611.
| Crossref | Google Scholar |

Schoenefuss P, Kutt AS, Kern PL, Moffatt KA, Bon J, Wardle GM, Dickman CR, Hurwood DA, Baker AM (2024) An investigation into the utility of eastern barn owl pellet content as a tool to monitor small mammal diversity in an arid ecosystem. Austral Ecology 49, e13503.
| Crossref | Google Scholar |

Silva M, Downing JA (1995) The allometric scaling of density and body mass: a nonlinear relationship for terrestrial mammals. The American Naturalist 145(5), 704-727.
| Crossref | Google Scholar |

Stanisic J, Shea M, Potter D, Griffiths O (2010) ‘Australian Land Snails. Vol. 1. A field guide to eastern Australian species.’ (Bioculture Press: Mauritius)

Stuiver M, Polach HA (1977) Discussion reporting of 14C data. Radiocarbon 19, 355-363.
| Crossref | Google Scholar |

Travouillon KJ, Simoes BF, Miguez RP, Brace S, Brewer P, Stemmer D, Price GJ, Cramb J, Louys J (2019) Hidden in plain sight: reassessment of the pig-footed bandicoot, Chaeropus ecaudatus (Peramelemorphia, Chaeropodidae), with a description of a new species from Central Australia, and use of the fossil record to trace its past distribution. Zootaxa 4566, 1-69.
| Crossref | Google Scholar |

Vakil V, Cramb J, Price GJ, Webb GE, Louys J (2023) Conservation implications of a new fossil species of hopping-mouse, Notomys magnus sp. nov. (Rodentia: Muridae), from the Broken River Region, northeastern Queensland. Alcheringa: An Australasian Journal of Palaeontology 47, 590-601.
| Crossref | Google Scholar |

van Klinken GJ (1999) Bone collagen quality indicators for palaeodietary and radiocarbon measurements. Journal of Archaeological Science 26, 687-695.
| Crossref | Google Scholar |

Waller N (2019) Surveys of small and medium sized mammals in northern Queensland with emphasis on improving survey methods for detecting low density populations. MPhil Thesis, School of Agriculture and Food Science, the University of Queensland.

Waller NL, Gynther IC, Freeman AB, Lavery TH, Leung LK-P (2017) The Bramble Cay melomys Melomys rubicola (Rodentia: Muridae): a first mammalian extinction caused by human-induced climate change? Wildlife Research 44, 9-21.
| Crossref | Google Scholar |

Warburton NM, Travouillon KJ (2016) The biology and palaeontology of the Peramelemorphia: a review of current knowledge and future research directions. Australian Journal of Zoology 64, 151-181.
| Crossref | Google Scholar |

Williams J, Mitchell A, Gawne B (2005) A review of historic monitoring (river health and water quality) and research within the Broken River system.

Wilson S, Swan G (2020) ‘A complete guide to reptiles in Australia’, 6th edn. (CSIRO: Melbourne, Vic, Australia)

Withnall IW (1989) Revision of the stratigraphy of the Broken Rive area, north Queensland – Ordovician and Silurian units. Queensland Government Mining Journal 90, 213-218.
| Google Scholar |

Woinarski JCZ, Risler J, Kean L (2004) Response of vegetation and vertebrate fauna to 23 years of fire exclusion in a tropical Eucalyptus open forest, Northern Territory, Australia. Austral Ecology 29, 156-176.
| Crossref | Google Scholar |

Woinarski JCZ, Armstrong M, Brennan K, Fisher A, Griffiths AD, Hill B, Milne DJ, Palmer C, Ward S, Watson M, Winderlich S, Young S (2010) Monitoring indicates rapid and severe decline of native small mammals in Kakadu National Park, northern Australia. Wildlife Research 37, 116-126.
| Crossref | Google Scholar |

Woinarski JCZ, Legge S, Fitzsimons JA, Traill BJ, Burbidge AA, Fisher A, Firth RSC, Gordon IJ, Griffiths AD, Johnson CN, McKenzie NL, Palmer C, Radford I, Rankmore B, Ritchie EG, Ward S, Ziembicki M (2011) The disappearing mammal fauna of northern Australia: context, cause, and response. Conservation Letters 4, 192-201.
| Crossref | Google Scholar |

Woinarski JCZ, Burbidge AA, Harrison PL (2015) Ongoing unraveling of a continental fauna: decline and extinction of Australian mammals since European settlement. Proceedings of the National Academy of Sciences of the United States of America 112, 4531-4540.
| Crossref | Google Scholar | PubMed |

Woinarski JCZ, Garnett ST, Legge SM, Lindenmayer DB (2017) The contribution of policy, law, management, research, and advocacy failings to the recent extinctions of three Australian vertebrate species. Conservation Biology 31, 13-23.
| Crossref | Google Scholar | PubMed |

Woinarski JCZ, Braby MF, Burbidge AA, Coates D, Garnett ST, Fensham RJ, Legge SM, McKenzie NL, Silcock JL, Murphy BP (2019) Reading the black book: the number, timing, distribution and causes of listed extinctions in Australia. Biological Conservation 239, 108261.
| Crossref | Google Scholar |

Wood RE, Esmay R, Usher E, Fallon SJ (2023) Sample preparation methods used at the Australian National University Radiocarbon facility. Radiocarbon 65, 573-589.
| Crossref | Google Scholar |

Ziembicki MR, Woinarski JCZ, Mackey B (2013) Evaluating the status of species using Indigenous knowledge: novel evidence for major native mammal declines in northern Australia. Biological Conservation 157, 78-92.
| Crossref | Google Scholar |