Genetic control of seed dormancy in Lolium rigidum and its association with GA20ox and ABA1 expression
Zarka Ramiz A * , Jenna Malone A , Christopher Preston A and Gurjeet Gill AA School of Agriculture, Food and Wine, The University of Adelaide, PMB1, Glen Osmond, SA 5064, Australia.
Crop & Pasture Science 73(12) 1406-1415 https://doi.org/10.1071/CP22088
Submitted: 16 March 2022 Accepted: 10 June 2022 Published: 1 July 2022
© 2022 The Author(s) (or their employer(s)). Published by CSIRO Publishing
Abstract
Context: Lolium rigidum Gaudin (annual ryegrass) has remained the most problematic weed of crop production in Australia for more than 20 years. There is some evidence that this weed species can rapidly adapt to management practices including delayed crop sowing.
Aims: Studies were undertaken to determine genetic variation for seed dormancy within L. rigidum populations and its association with genes involved with gibberellic acid and abscisic acid synthesis.
Methodology: Populations of L. rigidum were grown in pots to select low and high dormancy cohorts. Seeds produced by these cohorts from each population were assessed for variation in seed dormancy. Seeds of high and low dormancy cohorts were concurrently assessed for seed dormancy and expression of LrABA1 and LrGA20ox genes, using quantitative real-time PCR.
Results: Presence of differences greater than two-fold in seed dormancy between populations from the same farm indicated in situ selection for seed dormancy, most likely in response to management. Low and high dormancy cohorts of all populations maintained clear differences in seed dormancy in both years of assessment. Differences in seed dormancy between low and high dormancy cohorts were significantly correlated with LrABA1 and LrGA20ox gene expression.
Conclusions: This investigation has provided clear evidence of the presence of genetic variation for seed dormancy within L. rigidum populations.
Implications: The presence of genetic variation for seed dormancy in L. rigidum populations will allow this weed to adapt rapidly to changes in weed management practices such as delayed sowing of crops.
Keywords: emergence, genes expression, high dormancy, Lolium rigidum, low dormancy, LrABA1, LrGA20ox, variation.
References
Adu-Yeboah P, Malone JM, Fleet B, Gill G, Preston C (2020) EPSPS gene amplification confers resistance to glyphosate resistant populations of Hordeum glaucum Stued (northern barley grass) in South Australia. Pest Management Science 76, 1214–1221.| EPSPS gene amplification confers resistance to glyphosate resistant populations of Hordeum glaucum Stued (northern barley grass) in South Australia.Crossref | GoogleScholarGoogle Scholar | 31686435PubMed |
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. Journal of Molecular Biology 215, 403–410.
| Basic local alignment search tool.Crossref | GoogleScholarGoogle Scholar | 2231712PubMed |
Andersson L, Milberg P (1998) Variation in seed dormancy among mother plants, populations and years of seed collection. Seed Science Research 8, 29–38.
| Variation in seed dormancy among mother plants, populations and years of seed collection.Crossref | GoogleScholarGoogle Scholar |
Arora R, Rowland LJ, Tanino K (2003) Induction and release of bud dormancy in woody perennials: a science comes of age. HortScience 38, 911–921.
| Induction and release of bud dormancy in woody perennials: a science comes of age.Crossref | GoogleScholarGoogle Scholar |
Bentsink L, Soppe W, Koornneef M (2018) Genetic aspects of seed dormancy. In ‘Annual plant reviews online’. (Ed. JA Roberts) pp. 113–132. (Wiley: Hoboken, NJ, USA)
Boutsalis P, Gill GS, Preston C (2012) Incidence of herbicide resistance in rigid ryegrass (Lolium rigidum) across southeastern Australia. Weed Technology 26, 391–398.
| Incidence of herbicide resistance in rigid ryegrass (Lolium rigidum) across southeastern Australia.Crossref | GoogleScholarGoogle Scholar |
Chao WS, Doğramaci M, Anderson JV, Foley ME, Horvath DP (2014) The resemblance and disparity of gene expression in dormant and non-dormant seeds and crown buds of leafy spurge (Euphorbia esula). BMC Plant Biology 14, 216
| The resemblance and disparity of gene expression in dormant and non-dormant seeds and crown buds of leafy spurge (Euphorbia esula).Crossref | GoogleScholarGoogle Scholar | 25112962PubMed |
Ellery AJ, Gallagher RS, Dudley SV, Nicolas G, Bradford K, Come D, Pritchard H (2003) Dormancy and germination ecology of annual ryegrass (Lolium rigidum Gaud.). In ‘The biology of seeds: recent research advances’. (Eds G Nicolás, KJ Bradford, D Côme, HW Pritchard) pp. 389–396. (Cambridge, CAB International: Wallingford, UK)
Feurtado JA, Kermode AR (2007) A merging of paths: abscisic acid and hormonal cross-talk in the control of seed dormancy maintenance and alleviation. In ‘Annual plant reviews: seed development, dormancy and germination. Vol. 27’. (Eds KJ Bradford, H Nonogaki) pp. 176–223. (Wiley-Blackwell: Hoboken, NJ, USA)
Finch-Savage WE, Leubner-Metzger G (2006) Seed dormancy and the control of germination. New Phytologist 171, 501–523.
| Seed dormancy and the control of germination.Crossref | GoogleScholarGoogle Scholar | 16866955PubMed |
Finkelstein RR, Gampala SSL, Rock CD (2002) Abscisic acid signaling in seeds and seedlings. The Plant Cell 14, S15–S45.
| Abscisic acid signaling in seeds and seedlings.Crossref | GoogleScholarGoogle Scholar | 12045268PubMed |
Finkelstein R, Reeves W, Ariizumi T, Steber C (2008) Molecular aspects of seed dormancy. Annual Review of Plant Biology 59, 387–415.
| Molecular aspects of seed dormancy.Crossref | GoogleScholarGoogle Scholar | 18257711PubMed |
Gaines TA, Zhang W, Wang D, Bukun B, Chisholm ST, Shaner DL, Nissen SJ, Patzoldt WL, Tranel PJ, Culpepper AS, Grey TL, Webster TM, Vencill WK, Sammons RD, Jiang J, Preston C, Leach JE, Westra P (2010) Gene amplification confers glyphosate resistance in Amaranthus palmeri. Proceedings of the National Academy of Sciences of the United States of America 107, 1029–1034.
| Gene amplification confers glyphosate resistance in Amaranthus palmeri.Crossref | GoogleScholarGoogle Scholar | 20018685PubMed |
Ghersa CM, Martínez-Ghersa MA, Brewer TG, Roush ML (1994) Selection pressures for diclofop-methyl resistance and germination time of Italian ryegrass. Agronomy Journal 86, 823–828.
| Selection pressures for diclofop-methyl resistance and germination time of Italian ryegrass.Crossref | GoogleScholarGoogle Scholar |
Gill GS (1996) Why annual ryegrass is a problem in Australian agriculture. Plant Protection Quarterly 11, 193–195.
Goggin DE, Emery RJN, Powles SB, Steadman KJ (2010) Initial characterisation of low and high seed dormancy populations of Lolium rigidum produced by repeated selection. Journal of Plant Physiology 167, 1282–1288.
| Initial characterisation of low and high seed dormancy populations of Lolium rigidum produced by repeated selection.Crossref | GoogleScholarGoogle Scholar | 20478642PubMed |
Goggin DE, Powles SB, Steadman KJ (2011) Selection for low or high primary dormancy in Lolium rigidum Gaud seeds results in constitutive differences in stress protein expression and peroxidase activity. Journal of Experimental Botany 62, 1037–1047.
| Selection for low or high primary dormancy in Lolium rigidum Gaud seeds results in constitutive differences in stress protein expression and peroxidase activity.Crossref | GoogleScholarGoogle Scholar | 20974739PubMed |
Gundel PE, Martínez-Ghersa MA, Ghersa CM (2008) Dormancy, germination and ageing of Lolium multiflorum seeds following contrasting herbicide selection regimes. European Journal of Agronomy 28, 606–613.
| Dormancy, germination and ageing of Lolium multiflorum seeds following contrasting herbicide selection regimes.Crossref | GoogleScholarGoogle Scholar |
Handreck KA, Black ND, Black N (2002) ‘Growing media for ornamental plants and turf.’ 4th edn. (UNSW Press: Sydney, NSW, Australia)
Jacobsen JV, Pearce DW, Poole AT, Pharis RP, Mander LN (2002) Abscisic acid, phaseic acid and gibberellin contents associated with dormancy and germination in barley. Physiologia Plantarum 115, 428–441.
| Abscisic acid, phaseic acid and gibberellin contents associated with dormancy and germination in barley.Crossref | GoogleScholarGoogle Scholar | 12081536PubMed |
Jacobsen JV, Barrero JM, Hughes T, Julkowska M, Taylor JM, Xu Q, Gubler F (2013) Roles for blue light, jasmonate and nitric oxide in the regulation of dormancy and germination in wheat grain (Triticum aestivum L.). Planta 238, 121–138.
| Roles for blue light, jasmonate and nitric oxide in the regulation of dormancy and germination in wheat grain (Triticum aestivum L.).Crossref | GoogleScholarGoogle Scholar | 23588419PubMed |
Kim S-Y, Hwang S-J, Lee I-J, Shin D-H, Park S-T, Yeo U-S, Kang H-W (2009) Effect of light on endogenous levels of gibberellin and abscisic acid in seed germination of photoblastic weedy rice (Oryza sativa L.). Journal of Crop Science and Biotechnology 12, 149–152.
| Effect of light on endogenous levels of gibberellin and abscisic acid in seed germination of photoblastic weedy rice (Oryza sativa L.).Crossref | GoogleScholarGoogle Scholar |
Kleemann SGL, Gill GS (2006) Differences in the distribution and seed germination behaviour of populations of Bromus rigidus and Bromus diandrus in South Australia: adaptations to habitat and implications for weed management. Australian Journal of Agricultural Research 57, 213–219.
| Differences in the distribution and seed germination behaviour of populations of Bromus rigidus and Bromus diandrus in South Australia: adaptations to habitat and implications for weed management.Crossref | GoogleScholarGoogle Scholar |
Kleemann SGL, Gill GS (2013) Seed dormancy and seedling emergence in ripgut brome (Bromus diandrus) populations in Southern Australia. Weed Science 61, 222–229.
| Seed dormancy and seedling emergence in ripgut brome (Bromus diandrus) populations in Southern Australia.Crossref | GoogleScholarGoogle Scholar |
Liu Y, Fang J, Xu F, Chu J, Yan C, Schläppi MR, Wang Y, Chu C (2014) Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars. Journal of Genetics and Genomics 41, 327–338.
| Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars.Crossref | GoogleScholarGoogle Scholar | 24976122PubMed |
Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods 25, 402–408.
| Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method.Crossref | GoogleScholarGoogle Scholar | 11846609PubMed |
Malone JM, Morran S, Shirley N, Boutsalis P, Preston C (2016) EPSPS gene amplification in glyphosate-resistant Bromus diandrus. Pest Management Science 72, 81–88.
| EPSPS gene amplification in glyphosate-resistant Bromus diandrus.Crossref | GoogleScholarGoogle Scholar | 25847720PubMed |
Meyer SE, Allen PS (1999) Ecological genetics of seed germination regulation in Bromus tectorum L. Oecologia 120, 27–34.
| Ecological genetics of seed germination regulation in Bromus tectorum L.Crossref | GoogleScholarGoogle Scholar | 28308050PubMed |
Milberg P, Andersson L (1994) Effect of emergence date on seed production and seed germinability in Thlaspi arvense. Swedish Journal of Agricultural Research 24, 143–146.
Nambara E, Okamoto M, Tatematsu K, Yano R, Seo M, Kamiya Y (2010) Abscisic acid and the control of seed dormancy and germination. Seed Science Research 20, 55–67.
| Abscisic acid and the control of seed dormancy and germination.Crossref | GoogleScholarGoogle Scholar |
NCBI Resource Coordinators (2016) Database resources of the National Center for Biotechnology Information. Nucleic Acids Research 44, D7–D19.
| Database resources of the National Center for Biotechnology Information.Crossref | GoogleScholarGoogle Scholar | 26615191PubMed |
Owen MJ, Goggin DE, Powles SB (2015) Intensive cropping systems select for greater seed dormancy and increased herbicide resistance levels in Lolium rigidum (annual ryegrass). Pest Management Science 71, 966–971.
| Intensive cropping systems select for greater seed dormancy and increased herbicide resistance levels in Lolium rigidum (annual ryegrass).Crossref | GoogleScholarGoogle Scholar | 25081066PubMed |
Peltzer S, Matson P (2002) Understanding the weed seed bank life of important agricultural weeds. In ‘Agribusiness crop updates’. (Ed. V Stewart) pp. 13–14. (Department of Agriculture Western Australia: Perth, WA, Australia)
Qasem JR (2019) Weed seed dormancy: the ecophysiology and survival strategies. In ‘Seed dormancy and germination’. (Ed. JC Jimenez-Lopez) pp. 1–36. (IntechOpen: London, UK)
Ruttink T, Arend M, Morreel K, Storme V, Rombauts S, Fromm J, Bhalerao RP, Boerjan W, Rohde A (2007) A molecular timetable for apical bud formation and dormancy induction in poplar. The Plant Cell 19, 2370–2390.
| A molecular timetable for apical bud formation and dormancy induction in poplar.Crossref | GoogleScholarGoogle Scholar | 17693531PubMed |
Seo M, Hanada A, Kuwahara A, Endo A, Okamoto M, Yamauchi Y, North H, Marion-Poll A, Sun T-p, Koshiba T, Kamiya Y, Yamaguchi S, Nambara E (2006) Regulation of hormone metabolism in Arabidopsis seeds: phytochrome regulation of abscisic acid metabolism and abscisic acid regulation of gibberellin metabolism. The Plant Journal 48, 354–366.
| Regulation of hormone metabolism in Arabidopsis seeds: phytochrome regulation of abscisic acid metabolism and abscisic acid regulation of gibberellin metabolism.Crossref | GoogleScholarGoogle Scholar | 17010113PubMed |
Son S, Chitnis VR, Liu A, Gao F, Nguyen T-N, Ayele BT (2016) Abscisic acid metabolic genes of wheat (Triticum aestivum L.): identification and insights into their functionality in seed dormancy and dehydration tolerance. Planta 244, 429–447.
| Abscisic acid metabolic genes of wheat (Triticum aestivum L.): identification and insights into their functionality in seed dormancy and dehydration tolerance.Crossref | GoogleScholarGoogle Scholar | 27091738PubMed |
Steadman KJ, Crawford AD, Gallagher RS (2003) Dormancy release in Lolium rigidum seeds is a function of thermal after-ripening time and seed water content. Functional Plant Biology 30, 345–352.
| Dormancy release in Lolium rigidum seeds is a function of thermal after-ripening time and seed water content.Crossref | GoogleScholarGoogle Scholar | 32689017PubMed |
Steadman KJ, Ellery AJ, Chapman R, Moore A, Turner NC (2004) Maturation temperature and rainfall influence seed dormancy characteristics of annual ryegrass (Lolium rigidum). Australian Journal of Agricultural Research 55, 1047–1057.
| Maturation temperature and rainfall influence seed dormancy characteristics of annual ryegrass (Lolium rigidum).Crossref | GoogleScholarGoogle Scholar |
Tuan PA, Kumar R, Rehal PK, Toora PK, Ayele BT (2018) Molecular mechanisms underlying abscisic acid/gibberellin balance in the control of seed dormancy and germination in cereals. Frontiers in Plant Science 9, 668
| Molecular mechanisms underlying abscisic acid/gibberellin balance in the control of seed dormancy and germination in cereals.Crossref | GoogleScholarGoogle Scholar | 29875780PubMed |
Wang D, Gao Z, Du P, Xiao W, Tan Q, Chen X, Li L, Gao D (2016) Expression of ABA metabolism-related genes suggests similarities and differences between seed dormancy and bud dormancy of peach (Prunus persica). Frontiers in Plant Science 6, 1248
| Expression of ABA metabolism-related genes suggests similarities and differences between seed dormancy and bud dormancy of peach (Prunus persica).Crossref | GoogleScholarGoogle Scholar | 26793222PubMed |
White CN, Proebsting WM, Hedden P, Rivin CJ (2000) Gibberellins and seed development in maize. I. Evidence that gibberellin/abscisic acid balance governs germination versus maturation pathways. Plant Physiology 122, 1081–1088.
| Gibberellins and seed development in maize. I. Evidence that gibberellin/abscisic acid balance governs germination versus maturation pathways.Crossref | GoogleScholarGoogle Scholar | 10759503PubMed |