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Australian Journal of Botany Australian Journal of Botany Society
Southern hemisphere botanical ecosystems
RESEARCH ARTICLE (Open Access)

Determining the distributions of plant communities in subantarctic vegetation using species distribution models

Nicholas B. Fitzgerald https://orcid.org/0000-0002-1281-6897 A * , Jamie B. Kirkpatrick https://orcid.org/0000-0003-2763-2692 A , Catherine R. Dickson https://orcid.org/0000-0002-9701-346X B , Laura K. Williams C , Alexander J. Fergus D and Jennie Whinam A
+ Author Affiliations
- Author Affiliations

A School of Geography and Spatial Sciences, University of Tasmania, Hobart, Tas. 7005, Australia.

B Tasmanian Land Conservancy, Hobart, Tas. 7005, Australia.

C Previously with School of Environmental and Rural Science, The University of New England, Armidale, NSW 2351, Australia.

D Manaaki Whenua–Landcare Research, Lincoln, 7640, New Zealand.

* Correspondence to: nbf@utas.edu.au

Handling Editor: Sarah Luxton

Australian Journal of Botany 70(4) 311-322 https://doi.org/10.1071/BT21124
Submitted: 11 October 2021  Accepted: 30 May 2022   Published: 8 July 2022

© 2022 The Author(s) (or their employer(s)). Published by CSIRO Publishing. This is an open access article distributed under the Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC)

Abstract

Context: Mapping of vegetation is important in understanding its dynamics in relation to climate change and disturbance. We investigated using species distribution models to predict plant species assemblages in a subantarctic environment where traditional image interpretation methods of vegetation mapping are limited by image availability and ability to discriminate vegetation types.

Aims: We test the efficacy for mapping of modelling the range and core range of common species. We also determine the relative importance of predictor variables for each of nine species.

Methods: We used random forest models to predict the total range and core range (>25% projected foliage cover) of nine potentially dominant plant species and determined the contributions of predictor variables to the models for each species.

Key results: Widespread species with extensively overlapping ranges were spatially more partitioned with modelling based on core range than with presence or absence modelling. The core range input produced a vegetation map that better approximated observed vegetation patterns than that from presence or absence data. The most important predictor variable varied between species, with elevation, distance from coast, latitude and an across island gradient (similar to longitude) being most influential.

Conclusions: Species distribution models using three categories (absent, <25% cover, ≥25% cover) and topographic variables derived from a digital elevation model can be used to model the distribution of vegetation assemblages in situations where presence or absence species models cannot discriminate assemblages.

Implications: Readily collected point location species data could be used to investigate change over time in the spatial extent of both species and vegetation types.

Keywords: feldmark, grassland, herbaceous plants, herbfield, megaherb, plant communities, random forest model, tundra, vegetation boundaries.


References

Adamson DA, Selkirk JM, Seppelt RD (1993) Serpentinite, harzburgite, and vegetation on Subantarctic Macquarie Island. Arctic and Alpine Research 25, 216–219.
Serpentinite, harzburgite, and vegetation on Subantarctic Macquarie Island.Crossref | GoogleScholarGoogle Scholar |

Adamson DA, Selkirk PM, Price DM, Ward N, Selkirk JM (1996) Pleistocene uplift and palaeoenvironments of Macquarie Island: evidence from palaeobeaches and sedimentary deposits. Papers and Proceedings of the Royal Society of Tasmania 130, 25–32.
Pleistocene uplift and palaeoenvironments of Macquarie Island: evidence from palaeobeaches and sedimentary deposits.Crossref | GoogleScholarGoogle Scholar |

Allouche O, Tsoar A, Kadmon R (2006) Assessing the accuracy of species distribution models: prevalence, kappa and the true skill statistic (TSS). Journal of Applied Ecology 43, 1223–1232.
Assessing the accuracy of species distribution models: prevalence, kappa and the true skill statistic (TSS).Crossref | GoogleScholarGoogle Scholar |

Anderson RP (2017) When and how should biotic interactions be considered in models of species niches and distributions? Journal of Biogeography 44, 8–17.
When and how should biotic interactions be considered in models of species niches and distributions?Crossref | GoogleScholarGoogle Scholar |

Austin M (2007) Species distribution models and ecological theory: a critical assessment and some possible new approaches. Ecological Modelling 200, 1–19.
Species distribution models and ecological theory: a critical assessment and some possible new approaches.Crossref | GoogleScholarGoogle Scholar |

Austin MP, Smith TM (1989) A new model for the continuum concept. Vegetatio 83, 35–47.
A new model for the continuum concept.Crossref | GoogleScholarGoogle Scholar |

Bergstrom DM, Chown SL (1999) Life at the front: history, ecology and change on southern ocean islands. Trends in Ecology & Evolution 14, 472–477.
Life at the front: history, ecology and change on southern ocean islands.Crossref | GoogleScholarGoogle Scholar |

Bergstrom DMM, Selkirk PM, Keenan HM, Wilson ME (1997) Reproductive behaviour of ten flowering plant species on subantarctic Macquarie Island. Opera Botanica 132, 109–120.

Boelhouwers J, Holness S, Sumner P (2003) The maritime subantarctic: a distinct periglacial environment. Geomorphology 52, 39–55.
The maritime subantarctic: a distinct periglacial environment.Crossref | GoogleScholarGoogle Scholar |

Breiman L (2001) Random forests. Machine Learning 45, 5–32.
Random forests.Crossref | GoogleScholarGoogle Scholar |

Bricher PK (2012) Methods for mapping the tundra vegetation of sub-antarctic Macquarie Island. PhD thesis, University of Tasmania, Hobart, Tas., Australia.

Bricher PK, Lucieer A, Shaw J, Terauds A, Bergstrom DM (2013) Mapping sub-antarctic cushion plants using random forests to combine very high resolution satellite imagery and terrain modelling. PLoS ONE 8, e72093
Mapping sub-antarctic cushion plants using random forests to combine very high resolution satellite imagery and terrain modelling.Crossref | GoogleScholarGoogle Scholar | 23940805PubMed |

Chardon NI, Pironon S, Peterson ML, Doak DF (2020) Incorporating intraspecific variation into species distribution models improves distribution predictions, but cannot predict species traits for a wide-spread plant species. Ecography 43, 60–74.
Incorporating intraspecific variation into species distribution models improves distribution predictions, but cannot predict species traits for a wide-spread plant species.Crossref | GoogleScholarGoogle Scholar |

Chen W, Li J, Zhang Y, Zhou F, Koehler K, Chen W, Li J, Zhang YU, Zhou F, Koehler K, Leblanc S, Fraser R, Olthof IAN, Zhang Y, Wang J (2009) Relating biomass and leaf area index to non-destructive measurements in order to monitor changes in Arctic vegetation. ARCTIC 62, 281–294.
Relating biomass and leaf area index to non-destructive measurements in order to monitor changes in Arctic vegetation.Crossref | GoogleScholarGoogle Scholar |

Department of Primary Industries, Parks, Water and Environment (2013) ‘TASVEG 3.0 Macquarie Island.’ (Tasmanian Vegetation Monitoring and Mapping Program, Resource Management and Conservation Division, DPIPWE: Hobart, Tas., Australia)

Dickson CR, Baker DJ, Bergstrom DM, Brookes RH, Whinam J, McGeoch MA (2021) Widespread dieback in a foundation species on a Sub-Antarctic World Heritage Island: fine-scale patterns and likely drivers. Austral Ecology 46, 52–64.
Widespread dieback in a foundation species on a Sub-Antarctic World Heritage Island: fine-scale patterns and likely drivers.Crossref | GoogleScholarGoogle Scholar |

Dormann CF, Elith J, Bacher S, Buchmann C, Carl G, Carré G, Marquéz JRG, Gruber B, Lafourcade B, Leitão PJ, Münkemüller T, McClean C, Osborne PE, Reineking B, Schröder B, Skidmore AK, Zurell D, Lautenbach S (2013) Collinearity: a review of methods to deal with it and a simulation study evaluating their performance. Ecography 36, 27–46.
Collinearity: a review of methods to deal with it and a simulation study evaluating their performance.Crossref | GoogleScholarGoogle Scholar |

Elith J, Leathwick JR (2009) Species distribution models: ecological explanation and prediction across space and time. Annual Review of Ecology, Evolution, and Systematics 40, 677–697.
Species distribution models: ecological explanation and prediction across space and time.Crossref | GoogleScholarGoogle Scholar |

Ferrier S, Guisan A (2006) Spatial modelling of biodiversity at the community level. Journal of Applied Ecology 43, 393–404.
Spatial modelling of biodiversity at the community level.Crossref | GoogleScholarGoogle Scholar |

Fitzgerald NB, Kirkpatrick JB (2017) Wind distortion in alpine and subantarctic plants is constant among life forms but does not necessarily reflect prevailing wind direction. Arctic, Antarctic, and Alpine Research 49, 521–535.
Wind distortion in alpine and subantarctic plants is constant among life forms but does not necessarily reflect prevailing wind direction.Crossref | GoogleScholarGoogle Scholar |

Fitzgerald NB, Kirkpatrick JB (2020) Air temperature lapse rates and cloud cover in a hyper-oceanic climate. Antarctic Science 32, 440–453.
Air temperature lapse rates and cloud cover in a hyper-oceanic climate.Crossref | GoogleScholarGoogle Scholar |

Fitzgerald NB, Kirkpatrick JB, Scott JJ (2021) Rephotography, permanent plots and remote sensing data provide varying insights on vegetation change on subantarctic Macquarie Island, 1980–2015. Austral Ecology 46, 762–775.
Rephotography, permanent plots and remote sensing data provide varying insights on vegetation change on subantarctic Macquarie Island, 1980–2015.Crossref | GoogleScholarGoogle Scholar |

Forthofer JM (2007) Modeling wind in complex terrain for use in fire spread prediction. PhD thesis, Colorado State University, Fort Collins, CO, USA.

Franklin J (2009) ‘Mapping species distributions: spatial inference and prediction.’ (Cambridge University Press: Cambridge, UK)

Hande LB, Siems ST, Manton MJ (2012) Observed trends in wind speed over the southern ocean. Geophysical Research Letters 39, L11802
Observed trends in wind speed over the southern ocean.Crossref | GoogleScholarGoogle Scholar |

Heikkinen RK, Luoto M, Virkkala R, Pearson RG, Körber J-H (2007) Biotic interactions improve prediction of boreal bird distributions at macro-scales. Global Ecology and Biogeography 16, 754–763.
Biotic interactions improve prediction of boreal bird distributions at macro-scales.Crossref | GoogleScholarGoogle Scholar |

Jovanovic B, Braganza K, Collins D, Jones D (2012) Climate variations and change evident in high-quality climate data for Australia’s Antarctic and remote island weather stations. Australian Meteorological and Oceanographic Journal 62, 247–261.
Climate variations and change evident in high-quality climate data for Australia’s Antarctic and remote island weather stations.Crossref | GoogleScholarGoogle Scholar |

Kirkpatrick JB (2009) The importance of integrating science and management: lessons from terrestial vegetation change on Macquarie and Heard islands. Papers and Proceedings of the Royal Society of Tasmania 143, 25–32.
The importance of integrating science and management: lessons from terrestial vegetation change on Macquarie and Heard islands.Crossref | GoogleScholarGoogle Scholar |

Kissling WD, Dormann CF, Groeneveld J, Hickler T, Kühn I, McInerny GJ, Montoya JM, Römermann C, Schiffers K, Schurr FM, Singer A, Svenning J-C, Zimmermann NE, O’Hara RB (2012) Towards novel approaches to modelling biotic interactions in multispecies assemblages at large spatial extents. Journal of Biogeography 39, 2163–2178.
Towards novel approaches to modelling biotic interactions in multispecies assemblages at large spatial extents.Crossref | GoogleScholarGoogle Scholar |

le Roux PC, Lenoir J, Pellissier L, Wisz MS, Luoto M (2013) Horizontal, but not vertical, biotic interactions affect fine-scale plant distribution patterns in a low-energy system. Ecology 94, 671–682.
Horizontal, but not vertical, biotic interactions affect fine-scale plant distribution patterns in a low-energy system.Crossref | GoogleScholarGoogle Scholar | 23687893PubMed |

le Roux PC, McGeoch MA (2008) Spatial variation in plant interactions across a severity gradient in the sub-Antarctic. Oecologia 155, 831–844.
Spatial variation in plant interactions across a severity gradient in the sub-Antarctic.Crossref | GoogleScholarGoogle Scholar | 18253754PubMed |

Lebouvier M, Frenot Y (2007) Conservation and management in the French sub-Antarctic islands and surrounding seas. Papers and Proceedings of the Royal Society of Tasmania 141, 23–28.
Conservation and management in the French sub-Antarctic islands and surrounding seas.Crossref | GoogleScholarGoogle Scholar |

Liaw A, Wiener M (2002) Classification and regression by randomForest. R News 2, 18–22.

Marmion M, Luoto M, Heikkinen RK, Thuiller W (2009) The performance of state-of-the-art modelling techniques depends on geographical distribution of species. Ecological Modelling 220, 3512–3520.
The performance of state-of-the-art modelling techniques depends on geographical distribution of species.Crossref | GoogleScholarGoogle Scholar |

Mod HK, Scherrer D, Luoto M, Guisan A (2016) What we use is not what we know: environmental predictors in plant distribution models. Journal of Vegetation Science 27, 1308–1322.
What we use is not what we know: environmental predictors in plant distribution models.Crossref | GoogleScholarGoogle Scholar |

Momberg M, Hedding DW, Luoto M, le Roux PC (2021a) Exposing wind stress as a driver of fine-scale variation in plant communities. Journal of Ecology 109, 2121–2136.
Exposing wind stress as a driver of fine-scale variation in plant communities.Crossref | GoogleScholarGoogle Scholar |

Momberg M, Hedding DW, Luoto M, le Roux PC (2021b) Species differ in their responses to wind: the underexplored link between species fine-scale occurrences and variation in wind stress. Journal of Vegetation Science 32, e13093
Species differ in their responses to wind: the underexplored link between species fine-scale occurrences and variation in wind stress.Crossref | GoogleScholarGoogle Scholar |

Murray H, Lucieer A, Williams R (2010) Texture-based classification of sub-Antarctic vegetation communities on Heard Island. International Journal of Applied Earth Observation and Geoinformation 12, 138–149.
Texture-based classification of sub-Antarctic vegetation communities on Heard Island.Crossref | GoogleScholarGoogle Scholar |

Norberg A, Abrego N, Blanchet FG, Adler FR, Anderson BJ, Anttila J, Araújo MB, Dallas T, Dunson D, Elith J, Foster SD, Fox R, Franklin J, Godsoe W, Guisan A, O’Hara B, Hill NA, Holt RD, Hui FKC, Husby M, Kålås JA, Lehikoinen A, Luoto M, Mod HK, Newell G, Renner I, Roslin T, Soininen J, Thuiller W, Vanhatalo J, Warton D, White M, Zimmermann NE, Gravel D, Ovaskainen O (2019) A comprehensive evaluation of predictive performance of 33 species distribution models at species and community levels. Ecological Monographs 89, e01370
A comprehensive evaluation of predictive performance of 33 species distribution models at species and community levels.Crossref | GoogleScholarGoogle Scholar |

Rich J (1996) Patterned quaking mire at Handspike Point, Macquarie Island. Papers and Proceedings of the Royal Society of Tasmania 130, 49–66.
Patterned quaking mire at Handspike Point, Macquarie Island.Crossref | GoogleScholarGoogle Scholar |

Scott JJ, Kirkpatrick JB (2013) Changes in the cover of plant species associated with climate change and grazing pressure on the Macquarie Island coastal slopes, 1980–2009. Polar Biology 36, 127–136.
Changes in the cover of plant species associated with climate change and grazing pressure on the Macquarie Island coastal slopes, 1980–2009.Crossref | GoogleScholarGoogle Scholar |

Selkirk P, Adamson D (1998) ‘Map of structural vegetation types and drainage on Subantarctic Macquarie Island.’ (Australian Antarctic Division: Hobart, Tas., Australia)

Selkirk PM, Seppelt RD, Selkirk DR (1990) ‘Subantarctic Macquarie Island: environment and biology.’ (Cambridge University Press: Cambridge, UK)

Selkirk-Bell JM, Selkirk PM (2013) Vegetation-banked terraces on Subantarctic Macquarie Island: a reappraisal. Arctic, Antarctic, and Alpine Research 45, 261–274.
Vegetation-banked terraces on Subantarctic Macquarie Island: a reappraisal.Crossref | GoogleScholarGoogle Scholar |

Shaw J, Terauds A, Bergstrom D (2011) Rapid commencement of ecosystem recovery following aerial baiting on sub-Antarctic Macquarie Island. Ecological Management & Restoration 12, 241–244.
Rapid commencement of ecosystem recovery following aerial baiting on sub-Antarctic Macquarie Island.Crossref | GoogleScholarGoogle Scholar |

Smith VR, Lewis Smith RI (1987) The biota and conservation status of sub-Antarctic Islands. Environment International 13, 95–104.
The biota and conservation status of sub-Antarctic Islands.Crossref | GoogleScholarGoogle Scholar |

Smith AB, Santos MJ (2020) Testing the ability of species distribution models to infer variable importance. Ecography 43, 1801–1813.
Testing the ability of species distribution models to infer variable importance.Crossref | GoogleScholarGoogle Scholar |

Thuiller W, Lafourcade B, Engler R, Araújo MB (2009) BIOMOD – a platform for ensemble forecasting of species distributions. Ecography 32, 369–373.
BIOMOD – a platform for ensemble forecasting of species distributions.Crossref | GoogleScholarGoogle Scholar |

Tweedie CE (2000) Climate change and the autecology of six plant species along an altitudinal gradient on Subantarctic Macquarie Island. PhD thesis, University of Queensland, Brisbane, Qld, Australia.

Van der Putten N, Mauquoy D, Verbruggen C, Björck S (2012) Subantarctic peatlands and their potential as palaeoenvironmental and palaeoclimatic archives. Quaternary International 268, 65–76.
Subantarctic peatlands and their potential as palaeoenvironmental and palaeoclimatic archives.Crossref | GoogleScholarGoogle Scholar |

Whinam J, Fitzgerald N, Visoiu M, Copson G (2014) Thirty years of vegetation dynamics in response to a fluctuating rabbit population on sub-Antarctic Macquarie Island. Ecological Management & Restoration 15, 41–51.
Thirty years of vegetation dynamics in response to a fluctuating rabbit population on sub-Antarctic Macquarie Island.Crossref | GoogleScholarGoogle Scholar |

Williams L, Howard C, Scott J (2016) Change in the distribution of the indigenous grass Poa litorosa on Sub-Antarctic Macquarie Island following the eradication of rabbits. Papers and Proceedings of the Royal Society of Tasmania 150, 1–8.
Change in the distribution of the indigenous grass Poa litorosa on Sub-Antarctic Macquarie Island following the eradication of rabbits.Crossref | GoogleScholarGoogle Scholar |