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Australian Journal of Botany Australian Journal of Botany Society
Southern hemisphere botanical ecosystems
RESEARCH ARTICLE

Nuclear DNA content of three Eucalyptus species estimated by flow and image cytometry

Milene Miranda Praça A , Carlos Roberto Carvalho A C and Carolina Ribeiro Diniz Boaventura Novaes B
+ Author Affiliations
- Author Affiliations

A Laboratório de Citogenética e Citometria, Departamento de Biologia Geral, Universidade Federal de Viçosa, 36570-000, Viçosa, MG, Brazil.

B School of Forest Resources and Conservation, University of Florida, Gainesville, Florida, 32611 USA.

C Corresponding author. Email: ccarvalh@ufv.br

Australian Journal of Botany 57(6) 524-531 https://doi.org/10.1071/BT09114
Submitted: 27 June 2009  Accepted: 15 September 2009   Published: 9 November 2009

Abstract

Previous flow cytometry (FCM) analyses delivered nearly equal mean values of nuclear 2C DNA content for Eucalyptus grandis Hill ex Maiden and E. urophylla S. T. Blake (1.33 pg and 1.34 pg, respectively), whereas E. globulus Labill. presented distinct mean values (1.09, 1.13 and 1.40). These differences have been attributed to the different methodological approach, utilised plant cultivar and presence of intrinsic metabolic compounds that affect fluorochrome fluorescence. In the present study, a FCM and image cytometry (ICM) design, following international consensus criteria, were adopted to reassess the nuclear DNA contents of the above-mentioned Eucalyptus species. Statistical analyses revealed either similar or discrepant nuclear DNA contents, depending on the standard species used and whether FCM or ICM was employed. Our results demonstrated that 2C DNA values obtained by FCM and ICM were most uniform when Solanum lycopersicum was used as a standard. Moreover, the values obtained for E. grandis and E. urophylla were close, but differed as much as 24.63% in relation to previous data, and E. globulus proportionally varied up to 25%. New DNA content values are suggested for these eucalypt species.


Acknowledgements

We thank CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico, Brazil) and FAPEMIG (Fundação de Amparo à Pesquisa do Estado de Minas Gerais) for providing the financial support for this work.


References


Abreu IS, Carvalho CR, Clarindo WR (2008) Chromosomal DNA content of sweet pepper determined by association of cytogenetic and cytometric tools. Plant Cell Reports 27, 1227–1233.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Alan AR, Zeng H, Assani A, Shi WL, McRae HE, Murch SJ, Saxena PK (2007) Assessment of genetic stability of the germplasm lines of medicinal plant Scutellaria baicalensis Georgi (huang-qin) in long-term, in vitro maintained cultures. Plant Cell Reports 26, 1345–1355.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Azmi A, Noin M, Landré P, Prouteau M, Boudet AM, Chriqui D (1997) High frequency plant regeneration from Eucalyptus globulus Labill. hypocotyls: ontogenesis and ploidy level of the regenerants. Plant Cell, Tissue and Organ Culture 51, 9–16.
Crossref | GoogleScholarGoogle Scholar | open url image1

Bennett MD, Leitch IJ (2005) Nuclear DNA amounts in angiosperms: progress, problems and prospects. Annals of Botany 95, 45–90.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Bennett MD, Price HJ, Johnston S (2008) Anthocyanin inhibits propidium iodide DNA fluorescence in Euphorbia pulcherrima: implications for genome size variation and flow cytometry. Annals of Botany 101, 777–790.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Bocking A, Nguyen VQH (2004) Diagnostic and prognostic use of DNA image cytometry in cervical squamous intraepithelial lesions and invasive carcinoma. Cancer Cytopathology 102, 41–54.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Campa C, Doulbeau S, Dussert S, Hamon S, Noirot M (2005a) Diversity in bean caffeine content among wild Coffea species: evidence of a discontinuous distribution. Food Chemistry 91, 633–637.
Crossref | GoogleScholarGoogle Scholar | CAS | open url image1

Campa C, Doulbeau S, Dussert S, Hamon S, Noirot M (2005b) Qualitative relationship between caffeine and chlorogenic acid contents among wild Coffea species. Food Chemistry 93, 135–139.
Crossref | GoogleScholarGoogle Scholar | CAS | open url image1

Carvalho CR, Saraiva LS (1993) A new heterochromatin banding pattern revealed by modified HKG banding technique for maize chromosomes. Heredity 70, 515–519.
Crossref | GoogleScholarGoogle Scholar | open url image1

Chieco P , Jonker A , Noorder CJF (2001) ‘Image cytometry.’ (BIOS and Springer: New York)

Clarindo WR, Carvalho CR (2006) A high quality chromosome preparation from cell suspension aggregates culture of Coffea canephora. Cytologia 71, 243–249.
Crossref | GoogleScholarGoogle Scholar | open url image1

Clarindo WR, Carvalho CR (2009) Comparison of the Coffea canephora and C. arabica karyotypes based on chromosomal DNA content. Plant Cell Reports 28, 73–81.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Cros J, Gavalda MC, Chabrillange N, Recalt C, Duperray C, Hamon S (1994) Variations in the total nuclear DNA content in African Coffea species (Rubiaceae). Cafe, Cacao 38, 3–10.
CAS |
open url image1

Cruz CD (1997) ‘Programa GENES – Aplicativo computacional em genética e estatística.’ (Editora UFV: Viçosa, Brazil)

Doležel J, Bartoš J (2005) Plant DNA flow cytometry and estimation of nuclear genome size. Annals of Botany 95, 99–110.
PubMed |
open url image1

Doležel J, Göhde W (1995) Sex determination in dioecious plants Melandrium album and M. rubrum using high-resolution flow cytometry. Cytometry 19, 103–106.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Doležel J, Sgorbati S, Lucretti S (1992) Comparison of three DNA fluorochromes for flow cytometric estimation of nuclear DNA content in plants. Physiologia Plantarum 85, 625–631.
Crossref | GoogleScholarGoogle Scholar | open url image1

Doležel J, Greilhuber J, Lucretti S, Meister A, Lysák MA, Nardi L, Obermayer R (1998) Plant genome size estimation by flow cytometry: inter-laboratory comparison. Annals of Botany 82, 17–26.
Crossref | GoogleScholarGoogle Scholar | open url image1

Doležel J, Bartoš J, Voglmayr H, Greilhuber J (2003) Nuclear DNA and genome size of trout and human. Cytometry 51, 127–128.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Galbraith DW, Harkins KR, Maddox JM, Ayres NM, Sharma DP, Firoozabady E (1983) Rapid flow cytometric analysis of the cell cycle in intact plant tissues. Science 220, 1049–1051.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Grattapaglia D, Bradshaw HD (1994) Nuclear DNA content of commercially important Eucalyptus species and hybrids. Canadian Journal of Forest Research 24, 1074–1078.
Crossref | GoogleScholarGoogle Scholar | open url image1

Greilhuber J (2005) Intraspecific variation in genome size in angiosperms: identifying its existence. Annals of Botany 95, 91–98.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Greilhuber J (2008) Cytochemistry and C-values: the less-well-known world of nuclear DNA amounts. Annals of Botany 101, 791–804.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Greilhuber J, Ebert I (1994) Genome size variation in Pisum sativum. Genome 37, 646–655.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Hardie DC, Gregory TR, Hebert PDN (2002) From pixels to picograms: a beginners’ guide to genome quantification by Feulgen image analysis densitometry. Journal of Histochemistry and Cytochemistry 50, 735–749.
CAS | PubMed |
open url image1

Haroske G, Baak JPA, Danielsen H, Giroud F, Gschwendtner A, Oberholzer M, Reith A, Spieler P, Böcking A (2001) Fourth updated ESACP consensus report on diagnostic DNA image cytometry. Analytical Cellular Pathology 23, 89–95.
CAS | PubMed |
open url image1

Johnston J, Bennett M, Rayburn A, Galbraith D, Price H (1999) Reference standards for determination of DNA content of plant nuclei. American Journal of Botany 86, 609–613.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Kovářová P, Navrátilová A, Macas J, Doležel J (2007) Chromosome analysis and sorting in Vicia sativa using flow cytometry. Biologia Plantarum 51, 43–48.
Crossref | GoogleScholarGoogle Scholar | open url image1

Ky CL, Louarn S, Dussert S, Guyot B, Hamon S, Noirot M (2001) Caffeine, trigonelline, chlorogenic acids and sucrose diversity in wild Coffea arabica L. and Coffea canephora P. accessions. Food Chemistry 75, 223–230.
Crossref | GoogleScholarGoogle Scholar | CAS | open url image1

Loureiro J, Rodriguez E, Doležel J, Santos C (2006a) Comparison of four nuclear isolation buffers for plant DNA flow cytometry. Annals of Botany 98, 679–689.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Loureiro J, Rodriguez E, Doležel J, Santos C (2006b) Flow cytometric and microscopic analysis of the effect of tannic acid on plant nuclei and estimation of DNA content. Annals of Botany 98, 515–527.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Loureiro J, Rodriguez E, Doležel J, Santos C (2007) Two new nuclear isolation buffers for plant DNA flow cytometry: a test with 37 species. Annals of Botany 100, 875–888.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Marie D, Brown SC (1993) A cytometric exercise in plant DNA histograms, with 2C values for 70 species. Biology of the Cell 78, 41–51.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Meister A (2005) Calculation of binding length of base-specific DNA dyes by comparison of sequence and flow cytometric data. Application to Oryza sativa and Arabidopsis thaliana. Journal of Theoretical Biology 232, 93–97.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Michaelson MJ, Price HJ, Ellison JR, Johnston JS (1991) Comparison of plant DNA contents determined by Feulgen densitometry and laser flow cytometry. American Journal of Botany 78, 183–188.
Crossref | GoogleScholarGoogle Scholar | CAS | open url image1

Neumann P, Požárková D, Vrána J, Doležel J, Macas J (2002) Chromosome sorting and PCR-based physical mapping in pea (Pisum sativum L.). Chromosome Research 10, 63–71.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Noirot M, Barre P, Louarn J, Duperray C, Hamon S (2000) Nucleus-cytosol interactions – a source of stoichiometric error in flow cytometric estimation of nuclear DNA content in plants. Annals of Botany 86, 309–316.
Crossref | GoogleScholarGoogle Scholar | CAS | open url image1

Noirot M, Barre P, Louarn J, Duperray C, Hamon S (2002) Consequences of stoichiometric error on nuclear DNA content evaluation in Coffea liberica var. dewevrei using DAPI and propidium iodide. Annals of Botany 89, 385–389.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Noirot M, Barre P, Duperray C, Louarn J, Hamon S (2003) Effects of caffeine and chlorogenic acid on propidium iodide accessibility to DNA: consequences on genome size evaluation in coffee tree. Annals of Botany 92, 259–264.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Noirot M, Barre P, Christophe D, Hamon S, Kochko A (2005) Investigation on the causes of stoichiometric error in genome size estimation using heat experiments: consequences on data interpretation. Annals of Botany 95, 111–118.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Otto FJ (1990) ‘Methods in cell biology.’ (Academic Press: San Diego, CA)

Pinto G, Loureiro J, Lopes T, Santos C (2004) Analysis of the genetic stability of Eucalyptus globulus Labill. somatic embryos by flow cytometry. Theoretical and Applied Genetics 109, 580–587.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Praça MM, Carvalho CR, Marcelino FC, Mendonça MAC (2008) Morphological aspects of Passiflora edulis f. flavicarpa chromosome using acridine orange banding and rDNA-FISH tools. Caryologia 61, 154–159. open url image1

Price HJ , Johnston JS (1996) ‘Methods of genome analysis in plants.’ (CRC Press LLC: Boca Raton)

Price HJ, Hodnett G, Johnston JS (2000) Sunflower (Helianthus annuus) leaves contain compounds that reduce nuclear propidium iodide fluorescence. Annals of Botany 86, 929–934.
Crossref | GoogleScholarGoogle Scholar | CAS | open url image1

Puech M, Giroud F (1999) Standardization of DNA quantitation by image analysis: quality control of instrumentation. Cytometry 36, 11–17.
Crossref | GoogleScholarGoogle Scholar | CAS | PubMed | open url image1

Singh RJ (2003) ‘Plant cytogenetics.’ (CRC Press LLC: Boca Raton)

Vilhar B, Dermastia M (2002) Standardization of instrumentation in plant DNA image cytometry. Acta Botanica Croatica 61, 11–26.
CAS |
open url image1

Vilhar B, Greilhuber J, Dolenc Koce J, Temsch EM, Dermastia M (2001) Plant genome size measurement with DNA image cytometry. Annals of Botany 87, 719–728.
Crossref | GoogleScholarGoogle Scholar | CAS | open url image1

Walker DJ, Monino I, Correal E (2006) Genome size in Bituminaria bituminosa (L.) C.H.Stirton (Fabaceae) populations: separation of ’true‘ differences from enviromental effects on DNA determination. Environmental and Experimental Botany 55, 258–265.
Crossref | GoogleScholarGoogle Scholar | CAS | open url image1

Zoldos V, Papes D, Brown SC, Panaud O, Siljak-Yakovlev S (1998) Genome size and base composition of seven Quercus species: inter- and intra-population variation. Genome 41, 162–168.
Crossref | GoogleScholarGoogle Scholar | CAS | open url image1