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Soil, land care and environmental research
Soil Research

Soil Research

Volume 59 Number 6 2021

Special Issue

Soil Organic Matter in a Stressed World

Guest Editors
Mark Farrell (CSIRO)
Lynne Macdonald (CSIRO)
Asmeret Asefaw Berhe (UC Merced, USA)
Alan Richardson (CSIRO)
Brian Wilson (UNE)
Tim Cavagnaro (University of Adelaide)
Mike Beare (Plant and Food Research, New Zealand)
Helen Glanville (Keele University, UK)

SRv59n6_EDSoil organic matter in a stressed world

Mark Farrell 0000-0003-4562-2738, Alan E. Richardson 0000-0003-0708-1299, Timothy R. Cavagnaro 0000-0002-9922-5677, Brian R. Wilson 0000-0002-7983-0909, Helen C. Glanville and Michael Beare 0000-0003-0027-3757
pp. i-iv

Māori, and many traditional peoples, regard the whole landscape as essentially interdependent and consider that the wellness of any part of it, be it soils, vegetation, water quality, etc., can only be understood within the context of the whole network of connections that sustain life. The challenge for researchers, from an indigenous perspective, is to be mindful of the ‘whole’ while focusing on the areas of their particular expertise.


A significant body of research on soil organic matter has been carried out in Scotland during the last decade. This review highlights major findings and identifies the need for more work addressing the urgency of the climate emergency and its impact on soil organic matter. Significant changes to land and soil management need to be implemented, in legislation and in practice, with existing mechanisms for informing policy development providing a possible way of achieving these changes.

SR19335Distribution of subsoil microbial activity and biomass under Australian rotational cotton as influenced by system, crop status and season

Katherine Polain 0000-0002-0007-4267, Oliver Knox, Brian Wilson 0000-0002-7983-0909, Christopher Guppy, Leanne Lisle, Gunasekhar Nachimuthu, Yui Osanai 0000-0001-6390-5382 and Nina Siebers 0000-0002-6431-0046
pp. 547-558

Healthy and productive soils are essential to life on earth, supporting the growth of food and fibre. A largely ignored aspect in agricultural soil research is the contribution of subsoil microorganisms to biological activity and biomass, with both being important in the health and productivity of soil. Our research indicates that subsoil microbial activity contributes significantly to the overall microbial activity down the soil profile and could therefore make a significant contribution to the sustainable management of Australian cotton systems.


Soil organic carbon can be both a source and sink of atmospheric carbon dioxide, with important implications for climate change. Responses of soil organic carbon under grazed pastures to irrigation vary from increases, no difference, to reductions when compared with unirrigated pasture. Over an annual pasture production cycle, irrigation did not affect soil organic carbon storage. However, summer irrigation promoted the transfer and storage of photosynthate-derived carbon in the fine particulate organic matter and clay size fractions.

SR20101Effect of long-term crop rotation and fertilisation management on soil humus dynamics in organic and sustainable agricultural management systems

Laura Masilionytė, Zita Kriaučiūnienė 0000-0002-2857-4765, Egidijus Šarauskis, Aušra Arlauskienė, Ričardas Krikštolaitis 0000-0001-9556-4121, Alvyra Šlepetienė, Danutė Jablonskytė-Raščė and Quirijn de Jong van Lier
pp. 573-585

Current agricultural management systems should integrate sustainable technologies to be more efficient, as well as decreasing adverse environmental impacts. One of the key elements in agroecosystems is status of the soil, which strongly depends on agricultural systems, crop rotations, organic and the use of mineral fertilisers. Experiments from long-term organic farming systems during four crop rotations, including different catch crops used as green manure, especially in combination with farmyard manure revealed positive effects on soil humus.

SR19353Sheep grazing to control weeds enhances soil carbon, not nitrogen

Upendra Sainju 0000-0001-6943-733X, Patrick Hatfield and Devon Ragen
pp. 586-594

Sheep grazing is a common practice to control weeds, but little is known about its effect on soil health. Sheep grazing enhanced soil organic carbon but not nitrogen compared to tillage and herbicide application. Producers can improve soil organic matter and health by using sheep grazing on weeds and crop residue in dryland cropping systems.


Woody plant encroachment has transformed land-cover patterns in savannas and grasslands throughout the world, with implications for changes in soil organic carbon dynamics. In a study of pairs of neighbouring, woody encroached and grassland plots along a gradient from 300 to 1500 mm average annual rainfall, we examined three soil fractions down to a depth of 1 m. We found that shrub-encroached grasslands potentially sequester more carbon in soils of arid regions than in humid regions.

SR19393Spatial distribution of soil microbial activity and soil properties associated with Eucalyptus and Acacia plantings in NSW, Australia

A. Amarasinghe 0000-0002-6111-2263, C. Fyfe, O. G. G. Knox 0000-0002-0414-5771, L. A. Lobry de Bruyn 0000-0003-0173-2863, P. Kristiansen 0000-0003-2116-0663 and B. R. Wilson 0000-0002-7983-0909
pp. 609-618

The impacts of Acacia pendula and Eucalyptus camaldulensis used in environmental plantings on soil properties and microbial activity were tested. Changes in soil properties (total organic carbon, total nitrogen and extractable phosphorus) and microbial activity were elevated under the canopy, but the effect diminished with soil depth. The A. pendula made a greater contribution toward enhancement of soil nutrients and microbial activity than E. camaldulensis.

SR20040Quantifying blue carbon and nitrogen stocks in surface soils of temperate coastal wetlands

Christina H. Asanopoulos 0000-0002-5612-5510, Jeff A. Baldock 0000-0002-6428-8555, Lynne M. Macdonald and Timothy R. Cavagnaro
pp. 619-629

Blue carbon environments have the potential to assist in climate change mitigation by storing significant amounts of carbon in their above- and below-ground biomass and soils. The role of mangrove and tidal marsh vegetation on the carbon and nitrogen contents of temperate wetland surface soils and the spatial variability of stocks across and within vegetation type are quantified. Carbon and nitrogen stocks are driven by the geomorphology, environmental conditions and organic matter supply within sites rather than vegetation type.

SR20269Linking decomposition rates of soil organic amendments to their chemical composition

J. A. Baldock 0000-0002-6428-8555, C. Creamer, S. Szarvas, J. McGowan, T. Carter and M. Farrell 0000-0003-4562-2738
pp. 630-643

Organic amendments have a range of chemical compositions that affect their stability upon application to soils. We used a range of spectroscopic techniques coupled with chemometric analysis to predict their decomposability. We found that all tested spectroscopic techniques had strong predictive capacity to explain partitioning of organic amendment decomposition into fast and slow pools, but not their decomposition rates. Importantly, partitioning was strongly related to chemical composition, particularly carbohydrate, protein, and lignin signals.


Fatty acid-based lipids comprise a small but vitally important component of soil organic matter. The aim of this study was to use altitudinal transects to explore the factors controlling composition of intact fatty acid-based lipids. There were large differences among sites in the relative amounts of lipid classes and their fatty acid inventories, lipid composition among sites was most strongly most strongly associated with pH.

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