Soil properties and environmental factors across different altitudes influence biodiversity of root endophytic fungi in the orchid Bletilla sinensis
Manli Zhao A # , Wenxiang Deng A B C # , Xue Li A , Yongmei Li A , Qiong Huang A * and Chuntao Wang B *A
B
C
# These authors contributed equally to this paper
Handling Editor: Xinhua He
Abstract
Bletilla sinensis is a perennial orchid herb widely used in Chinese herbal medicine. The endophytic fungi associated with its roots significantly affect plant growth and secondary metabolite accumulation, whereas environmental factors crucially determine the community and diversity of these fungi.
This study investigated the impact of habitat environment on the symbiotic relationship between B. sinensis and its endophytic fungi by analysing the community composition and diversity of endophytic fungi in B. sinensis roots at various altitudes.
B. sinensis roots were sampled from three altitudes (HXJ1, HXJ2, HXJ3) in Jinjiang Town, Shangri-La County, Yunnan Province, China. Endophytic fungi were isolated and analysed using high-throughput sequencing technology.
The endophytic fungi were dominated by Ascomycota (85.4%) and Basidiomycota (14.6%). α-Diversity analysis showed that HXJ2 had the highest species richness (Chao1 = 34), while HXJ1 exhibited the highest diversity (Shannon = 2.25, Simpson = 0.84). β-Diversity analysis revealed moderate community similarities between sampling sites (Bray–Curtis indices: 0.433–0.597). Notably, fungal abundance showed strong positive correlations with soil total phosphorus (r = 1.000, P < 0.01) and total carbon (r = 0.998, P < 0.05) in HXJ1.
The study revealed a clear altitudinal pattern, where higher altitudes exhibited lower fungal diversity. However, the mid-altitude site (HXJ2) showed higher fungal diversity compared with both higher (HXJ3) and lower altitudes (HXJ1), suggesting that local environmental factors, such as soil nutrients and surrounding vegetation, may interact with temperature to influence fungal diversity.
This study sheds light on the symbiotic relationship between B. sinensis and its endophytic fungi, with implications for the cultivation and medicinal properties of this herb.
Keywords: altitude, Bletilla sinensis, endophytic fungi, environmental factors, fungal diversity, high-throughput sequencing, soil property, symbiotic relationship.
References
Alam B, Li J, Gě Q, Khan MA, Gong J, Mehmood S, Yuan Y, Gong W (2021) Endophytic fungi: from symbiosis to secondary metabolite communications or vice versa? Frontiers in Plant Science 12 791033.
| Crossref | Google Scholar |
Ancheeva E, Daletos G, Proksch P (2020) Bioactive secondary metabolites from endophytic fungi. Current Medicinal Chemistry 27(11), 1836-1854.
| Crossref | Google Scholar | PubMed |
Anderson MJ (2001) A new method for non-parametric multivariate analysis of variance. Austral Ecology 26(1), 32-46.
| Crossref | Google Scholar |
Arnold AE, Lutzoni F (2007) Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? Ecology 88(3), 541-549.
| Crossref | Google Scholar | PubMed |
Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society: Series B (Methodological) 57(1), 289-300.
| Crossref | Google Scholar |
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R (2010) QIIME allows analysis of high-throughput community sequencing data. Nature Methods 7, 335-336.
| Crossref | Google Scholar | PubMed |
Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17(4), 540-552.
| Crossref | Google Scholar | PubMed |
Chen J, Bittinger K, Charlson ES, Hoffmann C, Lewis J, Wu GD, Collman RG, Bushman FD, Li H (2012) Associating microbiome composition with environmental covariates using generalized UniFrac distances. Bioinformatics 28(16), 2106-2113.
| Crossref | Google Scholar | PubMed |
Chen J, Li L, Tian P, Xiang W, Lu X, Huang R, Li L (2021) Fungal endophytes from medicinal plant Bletilla striata (Thunb.) Reichb. F. promote the host plant growth and phenolic accumulation. South African Journal of Botany 143, 25-32.
| Crossref | Google Scholar |
Dixon P (2003) VEGAN, a package of R functions for community ecology. Journal of Vegetation Science 14(6), 927-930.
| Crossref | Google Scholar |
Dunn OJ (1964) Multiple comparisons using rank sums. Technometrics 6(3), 241-252.
| Google Scholar |
Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26(19), 2460-2461.
| Crossref | Google Scholar | PubMed |
Edgar RC (2013) UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nature Methods 10(10), 996-998.
| Crossref | Google Scholar |
Fang X, Yang Y, Zhao Z, Zhou Y, Liao Y, Guan Z, Chen S, Fang W, Chen F, Zhao S (2023) Optimum nitrogen, phosphorous, and potassium fertilizer application increased chrysanthemum growth and quality by reinforcing the soil microbial community and nutrient cycling function. Plants 12(23), 4062.
| Crossref | Google Scholar |
Glynou K, Ali T, Buch A-K, Kia SH, Ploch S, Xia X, Çelik A, Thines M, Maciá-Vicente JG (2016) The local environment determines the assembly of root endophytic fungi at a continental scale. Environmental Microbiology 18(8), 2418-2434.
| Crossref | Google Scholar | PubMed |
Guru A, Dwivedi P, Kaur P, Pandey DK (2022) Exploring the role of elicitors in enhancing medicinal values of plants under in vitro condition. South African Journal of Botany 149, 1029-1043.
| Crossref | Google Scholar |
Hardoim PR, van Overbeek LS, Berg G, Pirttila AM, Compant S, Campisano A, Döring M, Sessitsch A (2015) The hidden world within plants: ecological and evolutionary considerations for defining functioning of microbial endophytes. Microbiology and Molecular Biology Reviews 79(3), 293-320.
| Crossref | Google Scholar | PubMed |
Jia M, Chen L, Xin H-L, Zheng C-J, Rahman K, Han T, Qin L-P (2016) A friendly relationship between endophytic fungi and medicinal plants: a systematic review. Frontiers in Microbiology 7, 906.
| Crossref | Google Scholar |
Jiang S, Wang M, Jiang L, Xie Q, Yuan H, Yang Y, Zafar S, Liu Y, Jian Y, Li B, Wang W (2021) The medicinal uses of the genus Bletilla in traditional Chinese medicine: a phytochemical and pharmacological review. Journal of Ethnopharmacology 280, 114263.
| Crossref | Google Scholar |
Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30(4), 772-780.
| Crossref | Google Scholar | PubMed |
Kembel SW, Cowan PD, Helmus MR, Cornwell WK, Morlon H, Ackerly DD, Blomberg SP, Webb CO (2010) Picante: R tools for integrating phylogenies and ecology. Bioinformatics 26(11), 1463-1464.
| Crossref | Google Scholar | PubMed |
Letunic I, Bork P (2021) Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation. Nucleic Acids Research 49(W1), W293-W296.
| Crossref | Google Scholar | PubMed |
Li H-Y, Shen M, Zhou Z-P, Li T, Wei Y-L, Lin L-B (2012) Diversity and cold adaptation of endophytic fungi from five dominant plant species collected from the Baima Snow Mountain, Southwest China. Fungal Diversity 54, 79-86.
| Crossref | Google Scholar |
Li Y, Kong D, Fu Y, Sussman MR, Wu H (2020) The effect of developmental and environmental factors on secondary metabolites in medicinal plants. Plant Physiology and Biochemistry 148, 80-89.
| Crossref | Google Scholar | PubMed |
Li J, Wang X, Wu JH, Sun YX, Zhang YY, Zhao YF, Huang Z, Duan WH (2023) Climate and geochemistry at different altitudes influence soil fungal community aggregation patterns in alpine grasslands. Science of the Total Environment 881, 163375.
| Crossref | Google Scholar |
Li Q, Xiang P, Li L, Zhang T, Wu Q, Bao Z, Tu W, Zhao C (2024) Phosphorus mining activities alter endophytic bacterial communities and metabolic functions of surrounding vegetables and crops. Plant and Soil 497, 155-174.
| Crossref | Google Scholar |
Liu J, Wang D, Yan X, Jia L, Chen N, Liu J, Zhao P, Zhou L, Cao Q (2024) Effect of nitrogen, phosphorus and potassium fertilization management on soil properties and leaf traits and yield of Sapindus mukorossi. Frontiers in Plant Science 15, 1300683.
| Crossref | Google Scholar |
Magoč T, Salzberg SL (2011) FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27(21), 2957-2963.
| Crossref | Google Scholar | PubMed |
Ming Q, Su C, Zheng C, Jia M, Zhang Q, Zhang H, Rahman K, Han T, Qin L (2013) Elicitors from the endophytic fungus Trichoderma atroviride promote Salvia miltiorrhiza hairy root growth and tanshinone biosynthesis. Journal of Experimental Botany 64(18), 5687-5694.
| Crossref | Google Scholar | PubMed |
Mushtaq S, Shafiq M, Tariq MR, Sami A, Nawaz-ul-Rehman MS, Bhatti MHT, Haider MS, Sadiq S, Abbas MT, Hussain M, Shahid MA (2023) Interaction between bacterial endophytes and host plants. Frontiers in Plant Science 13, 1092105.
| Crossref | Google Scholar |
Nasif SO, Siddique AB, Siddique AB, Islam MM, Hassan O, Deepo DM, Hossain A (2023) Prospects of endophytic fungi as a natural resource for the sustainability of crop production in the modern era of changing climate. Symbiosis 89, 1-25.
| Crossref | Google Scholar |
Nilsson RH, Larsson K-H, Taylor AFS, Bengtsson-Palme J, Jeppesen TS, Schigel D, Kennedy P, Picard K, Glöckner FO, Tedersoo L, Saar I, Kõljalg U, Abarenkov K (2019) The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Research 47(D1), D259-D264.
| Crossref | Google Scholar | PubMed |
Oita S, Ibáñez A, Lutzoni F, Miadlikowska J, Geml J, Lewis LA, Hom EFY, Carbone I, U’Ren JM, Arnold AE (2021) Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale. Communications Biology 4, 313.
| Crossref | Google Scholar |
Price MN, Dehal PS, Arkin AP (2010) FastTree 2 – approximately maximum-likelihood trees for large alignments. PLoS ONE 5(3), e9490.
| Crossref | Google Scholar |
Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312-1313.
| Crossref | Google Scholar | PubMed |
Toju H, Tanabe AS, Yamamoto S, Sato H (2012) High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples. PLoS ONE 7(7), e40863.
| Crossref | Google Scholar |
Wang B, Chen C, Xiao Y, Chen K, Wang J, Zhou G (2023) Temperature thresholds drive the biogeographic pattern of root endophytic fungal diversity in the Qinghai-Tibet Plateau. Science of the Total Environment 889, 164270.
| Crossref | Google Scholar |
Wu L-Q, Li X-H (2004) Analysis on change of annual precipitation with altitude in high mountain areas. Yunnan Geographic Environment Research 2, 4-7.
| Google Scholar |
Xu D, Pan Y, Chen J (2019) Chemical constituents, pharmacologic properties, and clinical applications of Bletilla striata. Frontiers in Pharmacology 10, 1168.
| Crossref | Google Scholar |
Yang L, Wen K-S, Ruan X, Zhao Y-X, Wei F, Wang Q (2018) Response of plant secondary metabolites to environmental factors. Molecules 23(4), 762.
| Crossref | Google Scholar |
Ye H-T, Luo S-Q, Yang Z-N, Wang Y-S, Ding Q, Wang K-F, Yang S-X, Wang Y (2021) Endophytic fungi stimulate the concentration of medicinal secondary metabolites in houttuynia cordata thunb. Plant Signaling & Behavior 6(9), 1929731.
| Crossref | Google Scholar |
Yin H-J, Zhang Z-L, Liu Q (2018) Root exudates and their ecological consequences in forest ecosystems: problems and perspective. Chinese Journal of Plant Ecology 42(11), 1055-1070.
| Crossref | Google Scholar |
Zhang D, Liang X, Wang J (2014) A review of plant root exudates. Chinese Agricultural Science Bulletin 30(35), 314-320.
| Crossref | Google Scholar |
Zhang Y-J, Sun W, He Y, Wang S-H, Wang Q, Yuan F, Yang L-L, Liang Q (2018) Current situation and prospect of resource evaluation and sustainable utilization on Bletilla. Zhongguo Zhong Yao Za Zhi = Zhongguo Zhongyao Zazhi = China Journal of Chinese Materia Medica 43(22), 4397-4403.
| Google Scholar | PubMed |