Developing the Australian mid-infrared spectroscopic database using data from the Australian Soil Resource Information System
W. Hicks A , R. A. Viscarra Rossel A B and S. Tuomi AA CSIRO Land & Water, PO Box 1666, Canberra, ACT 2601, Australia.
B Corresponding author. Email: raphael.viscarra-rossel@csiro.au
Soil Research 53(8) 922-931 https://doi.org/10.1071/SR15171
Submitted: 15 June 2015 Accepted: 13 August 2015 Published: 13 October 2015
Abstract
We developed and tested spectroscopic models derived by partial least squares regression (PLSR) using data from the Commonwealth Scientific and Industrial Research Organisation’s (CSIRO) national soil database (NatSoil) and soil samples from the Australian National Soil Archive. Models were constructed for 21 soil attributes, and their predictability assessed using the R2, ranged from 0.57 for bicarbonate extractable available phosphorus to 0.92 for the sum of the exchangeable bases. Investigating the spectral library coverage with a suite of 1484 unknown samples from a geochemical survey of Australian catchments, we found that the models could be used to predict many soil attributes in a geographically diverse set of samples.
Additional keywords: mid infrared, mid-IR diffuse reflectance spectroscopy, FT-IR, particle size, sample preparation, sand, silt, clay, organic carbon.
References
Allison L (1960) Wet-combustion apparatus and procedure for organic and inorganic carbon in soil. Soil Science Society of America Proceedings 24, 36–40.Bruker (2011) Opus spectroscopy software version 7, Quant user manual. Bruker Optik Ettlingen, Germany.
Chang CW, Laird DA, Mausbach MJ, Hurburgh CR (2001) Near-infrared reflectance spectroscopy-principal components regression analyses of soil properties. Soil Science Society of America Journal 65, 480–490.
| Near-infrared reflectance spectroscopy-principal components regression analyses of soil properties.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD38Xpt1Om&md5=9cbc654eaecc4d89292a21c777853dfdCAS |
Colwell J (1963) The estimation of phosphorus fertilizer requirements for wheat in southern new south wales by soil analysis. Australian Journal of Experimental Agriculture and Animal Husbandry 3, 190–197.
de Caritat P, Lech ME, McPherson AA (2008) Geochemical mapping ‘down under’: selected results from pilot projects and strategy outline for the national geochemical survey of Australia. Geoscience Australia. www.ga.gov.au/metadata-gateway/metadata/record/71113/
Haaland DM, Thomas EV (1988) Partial least-squares methods for spectral analyses. 1. relation to other quantitative calibration methods and the extraction of qualitative information. Analytical Chemistry 60, 1193–1202.
Isbell R (2002) ‘The Australian Soil Classification.’ revised edn. (CSIRO Publishing: Melbourne)
IUPAC (2006a) ‘Compendium of chemical terminology.’ 2nd edn. (the “Gold Book”). (Compiled by AD McNaught and A Wilkinson) (Blackwell Scientific Publications, Oxford (1997). XML on-line corrected version: http://goldbook.iupac.org (2006-) created by M Nic, J Jirat, B Kosata; updates compiled by A. Jenkins.
IUPAC (2006b) ‘Compendium of chemical terminology.’ 2nd edn. (the “Gold Book”). (Compiled by AD McNaught and A Wilkinson) (Blackwell Scientific Publications: Oxford (1997). XML on-line corrected version: http://goldbook.iupac.org (2006-) created by M Nic, J Jirat, B Kosata; updates compiled by A. Jenkins.
Johnston RM, Barry SJ, Bleys E, Bui EN, Moran CJ, Simon DAP, Carlile P, McKenzie NJ, Henderson BL, Chapman C, Imhoff M, Maschmedt D, Howe D, Grose C, Schoknecht N, Powell B, Grundy M (2003) Asris: the database. Soil Research 41, 1021–1036.
| Asris: the database.Crossref | GoogleScholarGoogle Scholar |
Le Guillou F, Wetterlind J, Viscarra Rossel RA, Hicks W, Grundy M, Tuomi S (2015) How does grinding affect the mid-infrared spectra of soil and their multivariate calibrations to texture and organic carbon? Soil Research 53, 913–921.
Lyons D, Rayment G, Hill R, Daly B, Marsh J, Ingram C (2011) Aspac soil proficiency testing program report 2007–08. Tech. Report, ASPAC, Melbourne, Victoria. www.aspac-australasia.com/index.php/documents/upload-documents/doc_download/232-annual-review-soil-07-08
Maesschalck RD, Jouan-Rimbaud D, Massart D (2000) The mahalanobis distance. Chemometrics and Intelligent Laboratory Systems 50, 1–18.
Minasny B, McBratney AB (2006) A conditioned latin hypercube method for sampling in the presence of ancillary information. Computers & Geosciences 32, 1378–1388.
Rayment G, Higginson F (1992) Australian Laboratory Handbook of Soil and Water Chemical Methods. Australian Soil and Land Survey Handbooks Series. Inkata Press, Melbourne, Australia.
Rayment G, Lyons D (2011) ‘Soil chemical methods – Australasia.’ (CSIRO Publishing: Melbourne)
Viscarra Rossel R, Webster R (2011) Discrimination of australian soil horizons and classes from their visible-near infrared spectra. European Journal of Soil Science 62, 637–647.
Viscarra Rossel RA, Jeon YS, Odeh IOA, McBratney AB (2008) Using a legacy soil sample to develop a mid-IR spectral library. Soil Research 46, 1–16.
| Using a legacy soil sample to develop a mid-IR spectral library.Crossref | GoogleScholarGoogle Scholar |
Viscarra Rossel RA, Webster R (2012) Predicting soil properties from the australian soil visible-near infrared spectroscopic database. European Journal of Soil Science 63, 848–860.
Walkley A, Black I (1934) An examination of the degtjareff method for determining organic carbon in soils: Effect of variations in digestion conditions and of inorganic soil constituents. Soil Science 63, 251–263.