Free Standard AU & NZ Shipping For All Book Orders Over $80!
Register      Login
Australian Systematic Botany Australian Systematic Botany Society
Taxonomy, biogeography and evolution of plants
RESEARCH ARTICLE

Third time lucky? Another substantially revised sectional classification for Australasian Plagiochila (Plagiochilaceae: Jungermanniopsida)

Matt A. M. Renner A D , Simon D. F. Patzak B , Margaret M. Heslewood A , Alfons Schäfer-Verwimp C and Jochen Heinrichs B
+ Author Affiliations
- Author Affiliations

A Royal Botanic Gardens and Domain Trust, Mrs Macquaries Road, Sydney, NSW 2000, Australia.

B Ludwig Maximilian University, Faculty of Biology, Department of Biology and Geobio-Center, Menzinger Straße 67, D-80638 Munich, Germany.

C Mittlere Letten 11, D-88634 Herdwangen-Schönach, Germany.

D Corresponding author. Email: matt.renner@rbgsyd.nsw.gov.au

Australian Systematic Botany 30(1) 70-104 https://doi.org/10.1071/SB16038
Submitted: 19 September 2016  Accepted: 8 February 2017   Published: 31 May 2017

Abstract

Molecular phylogeny reconstruction has motivated recircumscription of all families and most genera within the Lophocoleinae, and in Plagiochila, the largest genus of this lineage, has refined the sectional classification as well. Here, we extend this ongoing revision in the first study focusing on species from Australasia, a region to date underrepresented in molecular phylogenetic datasets. We reconstructed a phylogeny containing more than 300 individuals from Australasia and the Pacific, and with this tested sectional circumscriptions within the two largely contradictory classifications recently proposed for Plagiochila. Neither scheme satisfactorily captures relationships among species and all sections prove paraphyletic or polyphyletic, with the exception of those defying these properties by virtue of containing only one species. We propose expanding the circumscription of several sections as the best option for achieving a revised classification representing monophyla that remains stable over the short to medium term, given current knowledge. Broader circumscriptions are proposed for section Denticulatae with section Tayloriae as a new synonym; section Arrectae with section Caducifoliae as a new synonym; a reinstated section Deflexifoliae; and section Plagiochila, to include P. trapezoidea; section Belangerianae to include sections Annotinae, Mitteniae and Strombifoliae as new synonyms; and section Durae with section Colensoae as a new synonym. Section Fragmentissimae is applied to the lineage previously named section Deltoideae nom. inval. or section Hodgsoniae nom. inval., as the Tasmanian P. ratkowskiana and New Zealand P. fragmentissima are the same, and sister to other species in the lineage containing P. deltoidea. Morphological characters supporting these groups are identified, but more importantly the proposed revisions provide a robust framework on which informed re-examination of morphology within this variable and species-rich genus can proceed, and we introduce some encouraging avenues in this area.


References

Bechteler J, Lee GE, Schäfer-Verwimp A, Pócs T, Peralta DF, Renner MAM, Schneider H, Heinrichs J (2016) Towards a monophyletic classification of Lejeuneaceae IV: reinstatement of Allorgella, transfer of Microlejeunea aphanella to Vitalianthus and refinements of the subtribal classification. Plant Systematics and Evolution 302, 187–201.
Towards a monophyletic classification of Lejeuneaceae IV: reinstatement of Allorgella, transfer of Microlejeunea aphanella to Vitalianthus and refinements of the subtribal classification.Crossref | GoogleScholarGoogle Scholar |

Bremer B, Bremer K, Chase MW, Fay MF, Reveal JL, Soltis DE, Soltis PS, Stevens PF, Anderberg AA, Moore MJ, Olmstead RG, Rudall PJ, Sytsma KJ, Tank DC, Wurdack K, Xiang JQY, Zmarzty S (2009) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Botanical Journal of the Linnean Society 161, 105–121.
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III.Crossref | GoogleScholarGoogle Scholar |

Carl H (1931) Die Arttypen und die systematische Gliederung der Gattung Plagiochila Dum. Annales Bryologici Supplementary Volume 2, 1–170.

Clements MA, Howard CG, Miller JT (2015) Caladenia revisited: results of molecular phylogenetic analyses of Caladeniinae plastid and nuclear loci. American Journal of Botany 102, 581–597.
Caladenia revisited: results of molecular phylogenetic analyses of Caladeniinae plastid and nuclear loci.Crossref | GoogleScholarGoogle Scholar |

Cooper ED, Henwood MJ, Brown EA (2012) Are the liverworts really that old? Cretaceous origins and Cenozoic diversifications in Lepidoziaceae reflect a recurrent theme in liverwort evolution. Biological Journal of the Linnean Society. Linnean Society of London 107, 425–441.
Are the liverworts really that old? Cretaceous origins and Cenozoic diversifications in Lepidoziaceae reflect a recurrent theme in liverwort evolution.Crossref | GoogleScholarGoogle Scholar |

Crandall-Stotler BJ, Stotler RE, Long DG (2009) Phylogeny and classification of the Marchantiophyta. Edinburgh Journal of Botany 66, 155–198.
Phylogeny and classification of the Marchantiophyta.Crossref | GoogleScholarGoogle Scholar |

Darriba D, Taboada Gl, Doallo R, Posada D (2012) jModelTest2: more models, new heuristics and parallel computing. Nature Methods 9, 772
jModelTest2: more models, new heuristics and parallel computing.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XhtFWmsbfP&md5=73923fa81b12f7189024e36149b9c579CAS |

Davis C (2004) A molecular phylogeny of leafy liverworts (Jungermanniidae, Marchantiophyta). In ‘Molecular Systematics of Bryophytes’. (Eds B Goffinet, V Hollowell, R Magill) pp. 61–86. (Missouri Botanical Gardens Press: St Louis, MO, USA)

Devos N, Renner MAM, Gradstein SR, Shaw AJ, Vanderpoorten A (2011) Molecular data challenge traditional subgeneric divisions in the leafy liverwort Radula. Taxon 60, 1623–1632.

Dong S, Schäfer-Verwimp A, Meinecke P, Feldberg K, Bombosch A, Pócs T, Schmidt AR, Reitner J, Schneider H, Heinrichs J (2012) Tramps, narrow endemics and morphologically cryptic species in the epiphyllous liverwort Diplasiolejeunea. Molecular Phylogenetics and Evolution 65, 582–594.
Tramps, narrow endemics and morphologically cryptic species in the epiphyllous liverwort Diplasiolejeunea.Crossref | GoogleScholarGoogle Scholar |

Drummond AJ, Suchard MA, Xie D, Rambaut A (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29, 1969–1973.
Bayesian phylogenetics with BEAUti and the BEAST 1.7.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XhtFagu7fO&md5=f63ae629377ad80ee4088ee8ef3c1021CAS |

Engel JJ (1991) Studies on Geocalycaceae (Hepaticae). II. Stolonivector, a new genus from New Zealand. The Journal of the Hattori Botanical Laboratory 69, 79–86.

Engel JJ (2009) Studies on Lophocoleaceae (Hepaticae). XVIII. Stolonivector Engel in New Zealand, including two new species, together with comments on generic endemism of Austral Hepaticae. Nova Hedwigia 88, 335–346.
Studies on Lophocoleaceae (Hepaticae). XVIII. Stolonivector Engel in New Zealand, including two new species, together with comments on generic endemism of Austral Hepaticae.Crossref | GoogleScholarGoogle Scholar |

Engel JJ, He XL (2010) Studies on Lophocoleaceae. XIX. The systematic identity of Cyanolophocolea R.M.Schust., an intriguing liverwort from New Zealand and Australia, based on morphological and molecular evidence. The Bryologist 113, 149–163.
Studies on Lophocoleaceae. XIX. The systematic identity of Cyanolophocolea R.M.Schust., an intriguing liverwort from New Zealand and Australia, based on morphological and molecular evidence.Crossref | GoogleScholarGoogle Scholar |

Engel JJ, Merrill GLS (2009) Austral Hepaticae 46. The identity of Plagiochila retrospectans (Nees ex Spreng.) Lindenb. and P. fuscella (Hook.f. & Taylor) Gottsche, Lindenb. & Nees, two misunderstood Australasian species. Nova Hedwigia 89, 287–301.
Austral Hepaticae 46. The identity of Plagiochila retrospectans (Nees ex Spreng.) Lindenb. and P. fuscella (Hook.f. & Taylor) Gottsche, Lindenb. & Nees, two misunderstood Australasian species.Crossref | GoogleScholarGoogle Scholar |

Engel JJ, Merrill GLS (2013) Austral Hepaticae. 49. New section names and synonymy in Plagiochila, with reference to New Zealand species [Plagiochilaceae (Jörg.) K.Müll.]. Nova Hedwigia 96, 399–408.
Austral Hepaticae. 49. New section names and synonymy in Plagiochila, with reference to New Zealand species [Plagiochilaceae (Jörg.) K.Müll.].Crossref | GoogleScholarGoogle Scholar |

Engel JJ, He XL, Glenny D (2010) Studies on Lophocoleaceae XXII. The systematic position of Amphilophocolea R.M.Schust. together with comments on the status of Tetracymbaliella Grolle and Lamellocolea R.M.Schust. Phytotaxa 9, 41–52.
Studies on Lophocoleaceae XXII. The systematic position of Amphilophocolea R.M.Schust. together with comments on the status of Tetracymbaliella Grolle and Lamellocolea R.M.Schust.Crossref | GoogleScholarGoogle Scholar |

Feldberg K, Schneider H, Stadler T, Schäfer-Verwimp A, Schmidt AR, Heinrichs J (2014) Epiphytic leafy liverworts diversified in angiosperm-dominated forests. Scientific Reports 4, 5974
Epiphytic leafy liverworts diversified in angiosperm-dominated forests.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC2MXksVyntLk%3D&md5=a612849120ed3a4d08da5d8d7fd20c0cCAS |

Forrest LL, Crandall-Stotler BJ (2004) A phylogeny of the simple thalloid liverworts (Jungermanniopsida, Metzgeriidae) as inferred from five chloroplast genes. In ‘Molecular Systematics of Bryophytes’. (Eds B Goffinet, V Hollowell, R Magill) pp. 119–140. (Missouri Botanical Gardens Press: St Louis MO, USA)

Forrest LL, Davis EC, Long DG, Crandall-Stotler BJ, Clark A, Hollingsworth ML (2006) Unraveling the evolutionary history of liverworts (Marchantiophyta): multiple taxa, genomes and analyses. The Bryologist 109, 303–334.
Unraveling the evolutionary history of liverworts (Marchantiophyta): multiple taxa, genomes and analyses.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD28XhtVWksLvL&md5=be6d6961e295e2b57f2f1bbbc18284a5CAS |

Gottsche CM, Lindenberg JBG, Nees von Esenbeck SG (1845) ‘Synopsis Hepaticarum.’ (Meissner: Hamburg, Germany)

Groth H, Heinrichs J (2003) Reinstatement of Chiastocaulon Carl (Plagiochilaceae) based on evidence from nuclear ribosomal ITS and chloroplast gene rps4 sequences. Plant Biology 5, 615–622.
Reinstatement of Chiastocaulon Carl (Plagiochilaceae) based on evidence from nuclear ribosomal ITS and chloroplast gene rps4 sequences.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2cXhvVKjtbs%3D&md5=7ae14dd9696bfd1b46aade4c8aac8f0aCAS |

Groth H, Heinrichs J (2005) Maximum likelihood analyses of chloroplast gene rbcL sequences indicate relationships of Syzygiella (Jungermanniopsida) with Lophoziaceae rather than Plagiochilaceae. Cryptogamie. Bryologie 26, 49–57.

Groth H, Linder M, Wilson R, Hartmann FA, Schmull M, Gradstein SR, Heinrichs J (2003) Biogeography of Plagiochila (Hepaticae). Natural species groups span several floristic kingdoms. Journal of Biogeography 30, 965–978.
Biogeography of Plagiochila (Hepaticae). Natural species groups span several floristic kingdoms.Crossref | GoogleScholarGoogle Scholar |

Groth H, Linder M, Heinrichs J (2004) Phylogeny and biogeography of Plagiochila (Plagiochilaceae) based on nuclear and chloroplast DNA sequences. In ‘Molecular Systematics of Bryophytes’. (Eds B Goffinet, V Hollowell, R Magill) pp. 365–387. (Missouri Botanical Gardens Press: St Louis MO, USA)

Guindon S, Gascuel O (2003) A simple, fast, and accurate method to estimate large phylogenies by maximum-likelihood. Systematic Biology 52, 696–704.
A simple, fast, and accurate method to estimate large phylogenies by maximum-likelihood.Crossref | GoogleScholarGoogle Scholar |

Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41, 95–98.

Hässel de Menéndez GG (2009) Andinopatagonian species of Plagiochila (Plagiochilaceae, Marchantiophyta) Sectio I. Duseniae Carl emend. Hässel and Sectio II. Jacquinotiae Hässel sect. nov. Nova Hedwigia 89, 71–95.
Andinopatagonian species of Plagiochila (Plagiochilaceae, Marchantiophyta) Sectio I. Duseniae Carl emend. Hässel and Sectio II. Jacquinotiae Hässel sect. nov.Crossref | GoogleScholarGoogle Scholar |

Hattori S (1947) Five new genera of Hepaticae. Biosphaera 1, 3–7.

He-Nygrén X-L, Piippo S (2003) Phylogenetic relationships of the generic complex Chiloscyphus-Lophocolea-Heteroscyphus (Geocalycaceae, Hepaticae): Insights from three chloroplast genes and morphology. Annales Botanici Fennici 40, 317–329.

He-Nygrén X-L, Ahonen I, Juslén A, Glenny D, Piippo S (2004) Phylogeny of liverworts: beyond a leaf and a thallus. In ‘Molecular Systematics of Bryophytes’. (Eds B Goffinet, V Hollowell, R Magill) pp. 87–118. (Missouri Botanical Gardens Press: St Louis MO, USA)

He-Nygrén X-L, Juslén A, Ahonen I, Glenny D, Piippo S (2006) Illuminating the evolutionary history of liverworts. Cladistics 22, 1–31.
Illuminating the evolutionary history of liverworts.Crossref | GoogleScholarGoogle Scholar |

Heinrichs J (2002) A taxonomic revision of Plagiochila sect. Hylacoetes, sect Adiantoideae, and sect. Fuscoluteae in the Neotropics with a preliminary subdivision of neotropical Plagiochilaceae into nine lineages. Bryophytorum Bibliotheca 58, 1–184.

Heinrichs J, Anton H, Gradstein SR, Mues R, Holz I (2000a) Surface wax, a new taxonomic feature in Plagiochilaceae. Plant Systematics and Evolution 225, 225–233.
Surface wax, a new taxonomic feature in Plagiochilaceae.Crossref | GoogleScholarGoogle Scholar |

Heinrichs J, Anton H, Gradstein SR, Mues R (2000b) Systematics of Plagiochila sect. Glaucescentes Carl (Hepaticae) from tropical America: a morphological and chemotaxonomical approach. Plant Systematics and Evolution 220, 115–138.
Systematics of Plagiochila sect. Glaucescentes Carl (Hepaticae) from tropical America: a morphological and chemotaxonomical approach.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXhtFaru7g%3D&md5=f6a7072460404e44b42cee45b40885f9CAS |

Heinrichs J, Groth H, Holz I, Rycroft DS, Renker C, Pröschold T (2002) The systematic position of Plagiochila moritziana, P. trichostoma, and P. deflexa based on ITS sequence variation of nuclear ribosomal DNA, morphology, and lipophilic secondary metabolites. The Bryologist 105, 189–203.
The systematic position of Plagiochila moritziana, P. trichostoma, and P. deflexa based on ITS sequence variation of nuclear ribosomal DNA, morphology, and lipophilic secondary metabolites.Crossref | GoogleScholarGoogle Scholar |

Heinrichs J, Groth H, Lindner M, Feldberg K, Rycroft DS (2004a) Molecular, morphological, and phytochemical evidence for a broad species concept of Plagiochila bifaria (Hepaticae). The Bryologist 107, 28–40.
Molecular, morphological, and phytochemical evidence for a broad species concept of Plagiochila bifaria (Hepaticae).Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2cXosVWgtrY%3D&md5=8837a2d4de0f7031423763b14a525e3cCAS |

Heinrichs J, Lindner M, Pócs T (2004b) nrDNA internal transcribed spacer data reveal that Rhodoplagiochila R.M.Schust. (Marchantiophyta: Jungermanniales) is a member of Plagiochila sect. Arrectae Carl. Organisms, Diversity & Evolution 4, 109–118.
nrDNA internal transcribed spacer data reveal that Rhodoplagiochila R.M.Schust. (Marchantiophyta: Jungermanniales) is a member of Plagiochila sect. Arrectae Carl.Crossref | GoogleScholarGoogle Scholar |

Heinrichs J, Lindner M, Groth H (2004c) Sectional classification of the North American Plagiochila (Hepaticae, Plagiochilaceae). The Bryologist 107, 489–496.
Sectional classification of the North American Plagiochila (Hepaticae, Plagiochilaceae).Crossref | GoogleScholarGoogle Scholar |

Heinrichs J, Groth H, Lindner M, Renker C, Pócs T, Pröschold T (2004d) Intercontinental distribution of Plagiochila corrugata (Plagiochilaceae, Hepaticae) inferred from nrDNA ITS sequences and morphology. Botanical Journal of the Linnean Society 146, 469–481.
Intercontinental distribution of Plagiochila corrugata (Plagiochilaceae, Hepaticae) inferred from nrDNA ITS sequences and morphology.Crossref | GoogleScholarGoogle Scholar |

Heinrichs J, Gradstein SR, Wilson R, Schneider H (2005a) Towards a natural classification of liverworts (Marchantiophyta based on the chloroplast gene rbcL. Cryptogamie. Bryologie 26, 131–150.

Heinrichs J, Wilson R, Feldberg K, Hentschel J, Schäfer-Verwimp A, León-Yánez S, Yandún S (2005b) The systematic position of Plagiochila (Jamesoniella) dependula (Jungermanniopsida) inferred from nrITS sequences and morphology, with notes on its differentiation from Plagiochila fuscolutea. Journal of Bryology 27, 319–327.
The systematic position of Plagiochila (Jamesoniella) dependula (Jungermanniopsida) inferred from nrITS sequences and morphology, with notes on its differentiation from Plagiochila fuscolutea.Crossref | GoogleScholarGoogle Scholar |

Heinrichs J, Linder M, Gradstein SR, Groth H, Buchbender V, Solga A, Fischer E (2005c) Origin and subdivision of Plagiochila (Jungermanniidae: Plagiochilaceae) in tropical Africa based on evidence from nuclear and chloroplast DNA sequences and morphology. Taxon 54, 317–333.
Origin and subdivision of Plagiochila (Jungermanniidae: Plagiochilaceae) in tropical Africa based on evidence from nuclear and chloroplast DNA sequences and morphology.Crossref | GoogleScholarGoogle Scholar |

Heinrichs J, Lindner M, Groth H, Renker C (2005d) Distribution and synonymy of Plagiochila punctata (Taylor) Taylor, with hypotheses on the evolutionary history of Plagiochila sect. Arrectae (Plagiochilaceae, Hepaticae). Plant Systematics and Evolution 250, 105–117.
Distribution and synonymy of Plagiochila punctata (Taylor) Taylor, with hypotheses on the evolutionary history of Plagiochila sect. Arrectae (Plagiochilaceae, Hepaticae).Crossref | GoogleScholarGoogle Scholar |

Heinrichs J, Linder M, Groth H, Hentschel J, Feldberg K, Renker C, Engel JJ, von Konrat M, Long DG, Schneider H (2006) Goodbye or welcome Gondwana? Insights into the phylogenetic biogeography of the leafy liverwort Plagiochila with a description of Proskauera, gen. nov. (Plagiochilaceae, Jungermanniales). Plant Systematics and Evolution 258, 227–250.
Goodbye or welcome Gondwana? Insights into the phylogenetic biogeography of the leafy liverwort Plagiochila with a description of Proskauera, gen. nov. (Plagiochilaceae, Jungermanniales).Crossref | GoogleScholarGoogle Scholar |

Heinrichs J, Dong S, Schäfer-Verwimp A, Peralta DF, Feldberg K, Schmidt AR, Schneider H (2014) Towards a monophyletic classification of Lejeuneaceae II: subtribes Pycnolejeuneinae and Xylolejeuneinae subtr. nov., transfer of Otolejeunea to Lepidolejeuninae, and generic refinements. Phytotaxa 163, 61–76.
Towards a monophyletic classification of Lejeuneaceae II: subtribes Pycnolejeuneinae and Xylolejeuneinae subtr. nov., transfer of Otolejeunea to Lepidolejeuninae, and generic refinements.Crossref | GoogleScholarGoogle Scholar |

Hentschel J, Wilson R, Burghardt M, Zündorf HJ, Schneider H, Heinrichs J (2006) Reinstatement of Lophocoleaceae (Jungermanniopsida) based on chloroplast gene rbcL data: exploring the importance of female involucres for the systematics of Jungermanniales. Plant Systematics and Evolution 258, 211–226.
Reinstatement of Lophocoleaceae (Jungermanniopsida) based on chloroplast gene rbcL data: exploring the importance of female involucres for the systematics of Jungermanniales.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD28XltVOitLk%3D&md5=201d40220ac417e97f5aaefdcede6da6CAS |

Hentschel J, Feldberg K, Zuendorf HJ, Hellwig FH, Schneider H, Heinrichs J (2007) The systematic position of Pachyglossa and Clasmatocolea (Jungermanniopsida: Lophocoleaceae) inferred from nrDNA ITS sequences and morphology. Taxon 56, 1136–1142.
The systematic position of Pachyglossa and Clasmatocolea (Jungermanniopsida: Lophocoleaceae) inferred from nrDNA ITS sequences and morphology.Crossref | GoogleScholarGoogle Scholar |

Inoue H (1958) The family Plagiochilaceae of Japan and Formosa, II. The Journal of the Hattori Botanical Laboratory 20, 54–106.

Inoue H (1964) The genus Plagiochilion. The Journal of the Hattori Botanical Laboratory 27, 51–72.

Inoue H (1965) Contributions to the knowledge of the Plagiochilaceae of southeastern Asia. VII. Synopsis of Plagiochila Dum. in the Himalayan region. Bulletin of the National Science Museum, Tokyo 8, 375–408.

Inoue H (1975) Notes on the Plagiochilaceae. IV. Sectio Caducilobae (sect. nov.) of the genus Plagiochila Dum. The Journal of the Hattori Botanical Laboratory 39, 339–343.

Inoue H (1984) ‘The Genus Plagiochila (Dum.) Dum. in Southeast Asia.’ (Academia Scientific Books Inc.: Tokyo, Japan)

Inoue H (1987) Steereochila, a new genus of the Plagiochilaceae from the neotropics. Memoirs of the New York Botanical Garden 45, 279–282.

Inoue H, Schuster RM (1971) A monograph of the New Zealand and Tasmanian Plagiochilaceae. The Journal of the Hattori Botanical Laboratory 34, 1–225.

Jamy M, Renner MAM, Patzak SDF, Heslewood MM, Schäfer-Verwimp A, Heinrichs J (2016) Reinstatement of Plagiochila sect. Abietinae (Plagiochilaceae, Jungermanniopsida). Cryptogamie. Bryologie 37, 351–360.
Reinstatement of Plagiochila sect. Abietinae (Plagiochilaceae, Jungermanniopsida).Crossref | GoogleScholarGoogle Scholar |

Lindenberg JBW (1843) ‘Species hepaticarum, fasc. 5.’ (Henry & Cohen)

Lindner M, Pócs T, Heinrichs J (2004) On the occurrence of Plagiochila stricta on Madagascar, new to Africa. The Journal of the Hattori Botanical Laboratory 96, 261–271.

Long D, Möller M, Preston J (2000) Phylogenetic relationships of Asterella (Aytoniaceae, Marchantiopsida) inferred from chloroplast DNA sequences. The Bryologist 103, 625–644.
Phylogenetic relationships of Asterella (Aytoniaceae, Marchantiopsida) inferred from chloroplast DNA sequences.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3MXmsFOjug%3D%3D&md5=52f33b67b285d6f4d161dae3a617777aCAS |

Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES science gateway for inference of large phylogenetic trees. In ‘Proceedings of the Gateway Computing Environments Workshop (GCE)’, 14 November 2010, New Orleans, LA, USA. pp 1–8. (Institute of Electrical and Electronics Engineers: Piscataway, NJ, USA)

Patzak SDF, Váňa J, Renner MAM, Heinrichs J (2016a) Transfer of the leafy liverwort Xenochila from Plagiochilaceae (Lophocoleineae) to Jungermanniaceae (Jungermanniineae). Plant Systematics and Evolution 302, 891–899.
Transfer of the leafy liverwort Xenochila from Plagiochilaceae (Lophocoleineae) to Jungermanniaceae (Jungermanniineae).Crossref | GoogleScholarGoogle Scholar |

Patzak SDF, Schäfer-Verwimp A, Váňa J, Renner MAM, Peralta DF, Heinrichs J (2016b) Chonecoleaceae (Lophocoleineae) is a synonym of Cephaloziellaceae (Cephaloziineae) and Rivlariella (Jungermanniineae) belongs to Scapaniaceae s.l. (Cephaloziineae). Phytotaxa 267, 91–102.
Chonecoleaceae (Lophocoleineae) is a synonym of Cephaloziellaceae (Cephaloziineae) and Rivlariella (Jungermanniineae) belongs to Scapaniaceae s.l. (Cephaloziineae).Crossref | GoogleScholarGoogle Scholar |

Patzak SDF, Renner MAM, Schäfer-Verwimp A, Feldberg K, Heslewood MM, Peralta DF, Souza A, Schneider H, Heinrichs J (2016c) A phylogeny of Lophocoleaceae–Plagiochilaceae–Brevianthaceae and a revised classification of Plagiochilaceae. Organisms, Diversity & Evolution 16, 481–495.
A phylogeny of Lophocoleaceae–Plagiochilaceae–Brevianthaceae and a revised classification of Plagiochilaceae.Crossref | GoogleScholarGoogle Scholar |

Ramaiya M, Johnston MG, Shaw B, Heinrichs J, Hentschel J, von Konrat M, Davison PG, Shaw AJ (2010) Morphologically cryptic biological species within the liverwort Frullania asagrayana. American Journal of Botany 97, 1707–1718.
Morphologically cryptic biological species within the liverwort Frullania asagrayana.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3cXhsVaqtb7E&md5=dda47b6df2035d6fbc676b05334f85efCAS |

Renner MAM, Brown EA, Wardle GM (2011) The Lejeunea tumida species group is positively polyphyletic (Lejeuneaceae: Jungermanniopsida). Australian Systematic Botany 24, 10–18.
The Lejeunea tumida species group is positively polyphyletic (Lejeuneaceae: Jungermanniopsida).Crossref | GoogleScholarGoogle Scholar |

Renner MAM, Heslewood MM, Jamy M, Patzak SDF, Engel JJ, Glenny DS, von Konrat MJ, Schäfer-Verwimp A, Heinrichs J (2016) An integrative revision of Dinckleria (Plagiochilaceae: Jungermanniopsida). Australian Systematic Botany 29, 95–118.
An integrative revision of Dinckleria (Plagiochilaceae: Jungermanniopsida).Crossref | GoogleScholarGoogle Scholar |

Renner MAM, Heslewood MM, Patzak SDF, Schäfer-Verwimp A, Heinrichs J (2017) By how much do we underestimate species diversity of liverworts using morphological evidence? An example from Australasian Plagiochila (Plagiochilaceae: Jungermanniopsida). Molecular Phylogenetics and Evolution 107, 576–593.
By how much do we underestimate species diversity of liverworts using morphological evidence? An example from Australasian Plagiochila (Plagiochilaceae: Jungermanniopsida).Crossref | GoogleScholarGoogle Scholar |

Renzaglia KS, Schuette S, Duff RJ, Ligrone R, Shaw AJ, Mishler BD, Duckett JG (2007) Bryophyte phylogeny: advancing the molecular and morphological frontiers. The Bryologist 110, 179–213.
Bryophyte phylogeny: advancing the molecular and morphological frontiers.Crossref | GoogleScholarGoogle Scholar |

Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572–1574.
MrBayes 3: Bayesian phylogenetic inference under mixed models.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3sXntlKms7k%3D&md5=3dbc2d5e642526e674c8ecd165e5af8dCAS |

Ronquist F, Teslenko M, van der Mark P, Ayres D, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61, 539–542.
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.Crossref | GoogleScholarGoogle Scholar |

Rycroft DS, Groth H, Heinrichs J (2004) Reinstatement of Plagiochila maderensis (Jungermanniopsida: Plagiochilaceae) based on chemical evidence and nrDNA ITS sequences. Journal of Bryology 26, 37–45.
Reinstatement of Plagiochila maderensis (Jungermanniopsida: Plagiochilaceae) based on chemical evidence and nrDNA ITS sequences.Crossref | GoogleScholarGoogle Scholar |

Schiffner V (1900) Die Hepaticae der Flora von Buitenzorg. I. Band. Denkschriften der Kaiserlichen Akademie der Wissenschaften. Mathematisch-Naturwissenschaftliche Klasse 70, 1–220.

Schuster RM (1966) ‘The Hepaticae and Anthocerotae of North America. Vol. I.’ (Columbia University Press: New York, NY, USA)

Schuster RM (1980) ‘The Hepaticae and Anthocerotae of North America. Vol. IV.’ (Columbia University Press: New York, NY, USA)

Schuster RM (1984) Evolution, phylogeny and classification of the Hepaticae. In ‘New Manual of Bryology’. (Ed. RM Schuster) pp. 892–1070. (Hattori Botanical Laboratory: Nichinan, Japan)

Schuster RM (2001) On Amphilophocolea Schust. and Cyanolophocolea (Schust.) Schust., new austral genera of Lophocoleoideae (Geocalycaceae). Nova Hedwigia 72, 91–104.

Shaw AJ (2000) Molecular phylogeography and cryptic speciation in the mosses, Mielichhoferia elongata and M. mielichhoferiana (Bryaceae). Molecular Ecology 9, 595–608.
Molecular phylogeography and cryptic speciation in the mosses, Mielichhoferia elongata and M. mielichhoferiana (Bryaceae).Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXjsFCqu7k%3D&md5=5d3d022487b3188cbff825fe70506aabCAS |

Shaw B, Crandall-Stotler B, Váňa J, Stotler RE, von Konrat MJ, Engel JJ, Davis EC, Long DG, Sova P, Shaw AJ (2015) Phylogenetic relationships and morphological evolution in a major clade of leafy liverworts (Phylum Marchatiophyta, Order Jungermanniales): suborder Jungermanniineae. Systematic Botany 40, 27–45.
Phylogenetic relationships and morphological evolution in a major clade of leafy liverworts (Phylum Marchatiophyta, Order Jungermanniales): suborder Jungermanniineae.Crossref | GoogleScholarGoogle Scholar |

So ML (2001a) On several little known species of Plagiochila in Australasian and the Pacific with description of Plagiochila sublyallii sp. nov. from Papua New Guinea. New Zealand Journal of Botany 39, 109–114.
On several little known species of Plagiochila in Australasian and the Pacific with description of Plagiochila sublyallii sp. nov. from Papua New Guinea.Crossref | GoogleScholarGoogle Scholar |

So ML (2001b) Recognised species of Plagiochila in Australasia and some island groups of the Pacific Ocean. New Zealand Journal of Botany 39, 395–421.
Recognised species of Plagiochila in Australasia and some island groups of the Pacific Ocean.Crossref | GoogleScholarGoogle Scholar |

So ML (2001c) Studies on Plagiochila subgenus Metaplagiochila (Plagiochilaceae, Hepaticae). Australian Systematic Botany 14, 677–688.
Studies on Plagiochila subgenus Metaplagiochila (Plagiochilaceae, Hepaticae).Crossref | GoogleScholarGoogle Scholar |

So ML, Grolle R (2001) On Plagiochila subgenus Plagiochila section Abietinae (Hepaticae). Systematic Botany 26, 459–469.

Söderström L, Crandall-Stotler BJ, Stotler RE, Váňa J, Hagborg A, von Konrat MJ (2013) Notes on early land plants today. 36. Generic treatment of Lophocoleaceae (Marchantiophyta). Phytotaxa 97, 36–43.
Notes on early land plants today. 36. Generic treatment of Lophocoleaceae (Marchantiophyta).Crossref | GoogleScholarGoogle Scholar |

Söderström L, Hagborg A, von Konrat M (2015) Notes on early land plants today. 69. Circumscription of Plagiochilaceae (Marchantiophyta) with a preliminary infrageneric subdivision of Plagiochila. Phytotaxa 208, 75–91.
Notes on early land plants today. 69. Circumscription of Plagiochilaceae (Marchantiophyta) with a preliminary infrageneric subdivision of Plagiochila.Crossref | GoogleScholarGoogle Scholar |

Söderström L, Hagborg A, von Konrat MJ, Bartholomew-Began S, Bell D, Briscoe L, Brown EA, Cargill DC, Costa DP, Crandall-Stotler BJ, Cooper ED, Dauphin G, Engel JJ, Feldberg K, Glenny DS, Gradstein SR, He XL, Heinrichs J, Hentschel J, Ilkiu-Borges AL, Katagiri T, Konstantinova NA, Larraín J, Long DG, Nebel M, Pócs T, Puche F, Reiner-Drehwald E, Renner MAM, Sass-Gyarmati A, Schäfer-Verwimp A, Moragues JGS, Stotler RE, Sukkharak P, Thiers BM, Uribe J, Váňa J, Villarreal JC, Wigginton M, Zhang L, Zhu RL (2016) World checklist of hornworts and liverworts. PhytoKeys 59, 1–828.
World checklist of hornworts and liverworts.Crossref | GoogleScholarGoogle Scholar |

Spruce R (1885) Hepaticae of the Amazon and the Andes of Peru and Ecuador II. Transactions and Proceedings of the Botanical Society of Edinburgh 15, 309–509.

Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312–1313.
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC2cXmvFCjsbc%3D&md5=c06829ae4e5ebcb519dc876293affabbCAS |

Vanderpoorten A, Hedenäs L, Cox CJ, Shaw AJ (2002) Phylogeny and morphological evolution of the Amblystegiaceae. Molecular Phylogenetics and Evolution 23, 1–21.
Phylogeny and morphological evolution of the Amblystegiaceae.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD38Xkt1KitLo%3D&md5=5ef163a7772e64556baefa7143221bc1CAS |

von Konrat MJ, Söderström L, Renner MAM, Hagborg A, Briscoe L, Engel JJ (2010) Early land plants today (ELPT): how many liverwort species are there? Phytotaxa 9, 22–40.
Early land plants today (ELPT): how many liverwort species are there?Crossref | GoogleScholarGoogle Scholar |

Weigend M, Luebert F, Selvi F, Brokamp G, Hilger HH (2013) Multiple origins for Hound’s tongues (Cynoglossum L.) and navel seeds (Omphalodes Mill.): the phylogeny of the borage family (Boraginaceae s. str.). Molecular Phylogenetics and Evolution 68, 604–618.
Multiple origins for Hound’s tongues (Cynoglossum L.) and navel seeds (Omphalodes Mill.): the phylogeny of the borage family (Boraginaceae s. str.).Crossref | GoogleScholarGoogle Scholar |

Wilson R, Gradstein SR, Heinrichs J, Groth H, Ilkiu-Borges AL, Hartmann FA (2004) Phylogeny of the Lejeuneaceae: a cladistic analysis of chloroplast gene rbcL sequences and morphology with preliminary comments on the mitochondrial nad4–2 spacer region. In ‘Molecular Systematics of Bryophytes’. (Eds B Goffinet, V Hollowell, R Magill) pp. 189–202. (Missouri Botanical Gardens Press: St Louis MO, USA)

Yu Y, Pócs T, Schäfer-Verwimp A, Heinrichs J, Zhu RL, Schneider H (2013) Evidence for rampant homoplasy in the phylogeny of the epiphyllous liverwort genus Cololejeunea (Lejeuneaceae). Systematic Botany 38, 553–563.
Evidence for rampant homoplasy in the phylogeny of the epiphyllous liverwort genus Cololejeunea (Lejeuneaceae).Crossref | GoogleScholarGoogle Scholar |