Genetic variation and cryptic diversity of the Alpheus lobidens complex (Decapoda: Alpheidae) associated with marine ecoregions

References

Almeida, A. O., Terossi, M., Araújo-Silva, C. L., and Mantelatto, F. L. (2013). Description of Alpheus buckupi spec. nov., a new amphi-Atlantic snapping shrimp (Caridea: Alpheidae), based on morphological and molecular data. Zootaxa 3652, 437–452.
| Description of Alpheus buckupi spec. nov., a new amphi-Atlantic snapping shrimp (Caridea: Alpheidae), based on morphological and molecular data.Crossref | GoogleScholarGoogle Scholar | 26269845PubMed |

Almeida, A. O., Terossi, M., and Mantelatto, F. L. (2014). Morphology and DNA analyses reveal a new cryptic snapping shrimp of the Alpheus heterochaelis Say, 1818 (Decapoda: Alpheidae) species complex from the western Atlantic. Zoosystema 36, 53–71.
| Morphology and DNA analyses reveal a new cryptic snapping shrimp of the Alpheus heterochaelis Say, 1818 (Decapoda: Alpheidae) species complex from the western Atlantic.Crossref | GoogleScholarGoogle Scholar |

Anker, A. (2001). Taxonomie et évolution des Alpheidae (Crustacea, Decapoda). Vol. 1 & 2. Ph.D. Thesis, Muséum National d’Histoire Naturelle, Paris, France.

Anker, A. (2012). Revision of the western Atlantic members of the Alpheus armillatus H. Milne Edwards, 1837 species complex (Decapoda, Alpheidae), with description of seven new species. Zootaxa 3386, 1–109.
| Revision of the western Atlantic members of the Alpheus armillatus H. Milne Edwards, 1837 species complex (Decapoda, Alpheidae), with description of seven new species.Crossref | GoogleScholarGoogle Scholar |

Anker, A., and De Grave, S. (2016). An updated and annotated checklist of marine and brackish caridean shrimps of Singapore (Crustacea, Decapoda). The Raffles Bulletin of Zoology 34, 343–454.

Anker, A., and Tóth, E. (2008). A preliminary revision of the Synalpheus paraneptunus Coutière, 1909 species complex (Crustacea: Decapoda: Alpheidae). Zootaxa 1915, 1–28.

Anker, A., Hurt, C., and Knowlton, N. (2008a). Revision of the Alpheus formosus Gibbes, 1850 complex, with redescription of A. formosus and description of a new species from the tropical western Atlantic (Crustacea: Decapoda: Alpheidae). Zootaxa 1707, 1–22.

Anker, A., Hurt, C., and Knowlton, N. (2008b). Revision of the Alpheus cristulifrons species complex (Crustacea: Decapoda: Alpheidae), with description of a new species from the tropical eastern Atlantic. Journal of the Marine Biological Association of the United Kingdom 88, 543–562.
| Revision of the Alpheus cristulifrons species complex (Crustacea: Decapoda: Alpheidae), with description of a new species from the tropical eastern Atlantic.Crossref | GoogleScholarGoogle Scholar |

Anker, A., Hurt, C., Jara, J. A., and Knowlton, N. (2008c). Revision of the Alpheus cylindricus Kingsley, 1878 species complex (Crustacea: Decapoda: Alpheidae), with revalidation of A. vanderbilti Boone, 1930. Zootaxa 1943, 53–68.

Anker, A., Hultgren, K. M., and De Grave, S. (2017). Synalpheus pinkfloydi sp. nov., a new pistol shrimp from the tropical eastern Pacific (Decapoda: Alpheidae). Zootaxa 4254, 111–119.
| Synalpheus pinkfloydi sp. nov., a new pistol shrimp from the tropical eastern Pacific (Decapoda: Alpheidae).Crossref | GoogleScholarGoogle Scholar | 28609985PubMed |

Anker, A., Al-Kandari, M., and De Grave, S. (2020). Taxonomic notes on Alpheus inopinatus Holthuis & Gottlieb, 1958 and Alpheus cf. lobidens De Haan, 1849 from Kuwait (Malacostraca: Decapoda: Alpheidae). Zootaxa 4851, 189–197.
| Taxonomic notes on Alpheus inopinatus Holthuis & Gottlieb, 1958 and Alpheus cf. lobidens De Haan, 1849 from Kuwait (Malacostraca: Decapoda: Alpheidae).Crossref | GoogleScholarGoogle Scholar |

Avise, J., Arnold, J. C., Ball, R. M., Bermingham, E., Lamb, T., Neigel, J. E., Reeb, C. A., and Saunders, N. C. (1987). Intraspecific phylogeography: the mtDNA bridge between population genetics and systematics. Annual Review of Ecology and Systematics 18, 489–522.
| Intraspecific phylogeography: the mtDNA bridge between population genetics and systematics.Crossref | GoogleScholarGoogle Scholar |

Aznar-Cormano, L., Brisset, J., Chan, T. Y., Corbari, L., Puillandre, N., Utge, J., Zbinden, M., Zuccon, D., and Samadi, S. (2015). An improved taxonomic sampling is a necessary but not sufficient condition for resolving inter-families relationships in Caridean decapods. Genetica 143, 195–205.
| An improved taxonomic sampling is a necessary but not sufficient condition for resolving inter-families relationships in Caridean decapods.Crossref | GoogleScholarGoogle Scholar | 25681232PubMed |

Bae, S. W., Lee, K. E., Park, Y., Kimoto, K., Ikehara, K., and Harada, N. (2014). Sea surface temperature and salinity changes near the Soya Strait during the last 19 ka. Quaternary International 344, 200–210.
| Sea surface temperature and salinity changes near the Soya Strait during the last 19 ka.Crossref | GoogleScholarGoogle Scholar |

Barber, P. H., Palumbi, S. R., Erdmann, M. V., and Kasim Moosa, M. (2000). A marine Wallace’s line? Nature 406, 692–693.
| A marine Wallace’s line?Crossref | GoogleScholarGoogle Scholar | 10963585PubMed |

Barkley, R. A. (1970). The Kuroshio current. Science Journal 6, 54–60.

Barnard, K. H. (1925). Report on a collection of Crustacea from Portuguese East Africa. Transactions of the Royal Society of South Africa 13, 119–129.
| Report on a collection of Crustacea from Portuguese East Africa.Crossref | GoogleScholarGoogle Scholar |

Benzie, J. A. (1999). Major genetic differences between crown‐of‐thorns starfish (Acanthaster planci) populations in the Indian and Pacific Oceans. Evolution 53, 1782–1795.
| 28565442PubMed |

Benzie, J. A. H., Ballment, E., Forbes, A. T., Demetriades, N. T., Sugama, K., and Moria, S. (2002). Mitochondrial DNA variation in Indo‐Pacific populations of the giant tiger prawn, Penaeus monodon. Molecular Ecology 11, 2553–2569.
| Mitochondrial DNA variation in Indo‐Pacific populations of the giant tiger prawn, Penaeus monodon.Crossref | GoogleScholarGoogle Scholar |

Bickford, D., Lohman, D. J., Sodhi, N. S., Ng, P. K. L., Meier, R., Winker, K., Ingram, K. K., and Das, I. (2007). Cryptic species as a window on diversity and conservation. Trends in Ecology & Evolution 22, 148–155.
| Cryptic species as a window on diversity and conservation.Crossref | GoogleScholarGoogle Scholar |

Boone, L. (1930). Crustacea: Anomura, Macrura, Schizopoda, Isopoda, Amphipoda, Mysidacea, Cirripedia, and Copepoda. In ‘Scientific Results of Cruises of the yachts ‘Eagle’ and ‘Ara’, 1921–1928, William K. Vanderbilt Commanding’. Bulletin Vanderbilt Marine Museum 1–221.

Booth, D. J., Figueira, W. F., Gregson, M. A., Brown, L., and Beretta, G. (2007). Occurrence of tropical fishes in temperate southeastern Australia: role of the East Australian Current. Estuarine, Coastal and Shelf Science 72, 102–114.
| Occurrence of tropical fishes in temperate southeastern Australia: role of the East Australian Current.Crossref | GoogleScholarGoogle Scholar |

Carpenter, K. E., Barber, P. H., Crandall, E. D., Ablan-Lagman, M. C. A., Ambariyanto, , Mahardika, G. N., Manjaji-Matsumoto, B. B., Juinio-Menez, M. A., Santos, M. D., Starger, C. J., and Toha, A. H. A. (2011). Comparative phylogeography of the coral triangle and implications for marine management. Journal of Marine Biology 2011, 1–14.
| Comparative phylogeography of the coral triangle and implications for marine management.Crossref | GoogleScholarGoogle Scholar |

Coutière, H. (1909). The American species of the snapping shrimps of the genus Synalpheus. Proceedings of the United States National Museum 36, 1–93.
| The American species of the snapping shrimps of the genus Synalpheus.Crossref | GoogleScholarGoogle Scholar |

Crandall, K. A., and Fitzpatrick, J. F. (1996). Crayfish molecular systematics: using a combination of procedures to estimate phylogeny. Systematic Biology 45, 1–26.
| Crayfish molecular systematics: using a combination of procedures to estimate phylogeny.Crossref | GoogleScholarGoogle Scholar |

Cunha, A. M., Terossi, M., Mantelatto, F. L., and Almeida, A. O. (2020). Delimiting the snapping shrimp Alpheus lobidens De Haan, 1849 (Caridea: Alpheidae) based on morphological and molecular data. Zootaxa 4718, 337–354.
| Delimiting the snapping shrimp Alpheus lobidens De Haan, 1849 (Caridea: Alpheidae) based on morphological and molecular data.Crossref | GoogleScholarGoogle Scholar |

D’Acoz, C. D. U. (2000). First record of Janicea antiguensis (Chace, 1972) from the Cape Verde Islands and in the eastern Atlantic (Decapoda, Caridea, Hippolytidae). Crustaceana 73, 1163–1166.
| First record of Janicea antiguensis (Chace, 1972) from the Cape Verde Islands and in the eastern Atlantic (Decapoda, Caridea, Hippolytidae).Crossref | GoogleScholarGoogle Scholar |

Darriba, D., Taboada, G. L., Doallo, R., and Posada, D. (2012). jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9, 772.
| jModelTest 2: more models, new heuristics and parallel computing.Crossref | GoogleScholarGoogle Scholar | 22847109PubMed |

De Haan, W. (1849). [1833–1850] Crustacea. In ‘Fauna Japonica sive Descriptio Animalium, quae in Itinere per Japoniam, Jussu et Auspiciis Superiorum, qui Summum in India Batava Imperium Tenent, Suspecto, Annis 1823–1830 Collegit, Notis, Observationibus et Adumbrationibus Illustravit’. (Ed. P. F. von Siebold.) i–xxxi, ix, xvi. (Lugduni-Batavorum.)

Dehghani, A., Sari, A., and Naderloo, R. (2019). Three new species of narrowly endemic snapping shrimp, genus Alpheus (Decapoda: Caridea: Alpheidae) from the Persian Gulf. Journal of the Marine Biological Association of the United Kingdom 99, 911–920.
| Three new species of narrowly endemic snapping shrimp, genus Alpheus (Decapoda: Caridea: Alpheidae) from the Persian Gulf.Crossref | GoogleScholarGoogle Scholar |

Drummond, A. J., Suchard, M. A., Xie, D., and Rambaut, A. (2012). Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29, 1969–1973.
| Bayesian phylogenetics with BEAUti and the BEAST 1.7.Crossref | GoogleScholarGoogle Scholar | 22367748PubMed |

Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32, 1792–1797.
| MUSCLE: multiple sequence alignment with high accuracy and high throughput.Crossref | GoogleScholarGoogle Scholar | 15034147PubMed |

Fabricius, J. C. (1798). ‘Supplementum Entomologiae Systematicae.’ (Proft et Storch: Hafniae.)

Fleischer, J., Grell, M., Høeg, J. T., and Olesen, J. (1992). Morphology of grooming limbs in species of Petrolisthes and Pachycheles (Crustacea: Decapoda: Anomura: Porcellanidae): a scanning electron microscopy study. Marine Biology 113, 425–435.
| Morphology of grooming limbs in species of Petrolisthes and Pachycheles (Crustacea: Decapoda: Anomura: Porcellanidae): a scanning electron microscopy study.Crossref | GoogleScholarGoogle Scholar |

Forskål, P. (1775). ‘Descriptiones Animalium Avium, Amphibiorum, Piscium, Insectorum, Vermium; quae in Itinere orientali observavit. Petrus Forskål. Post Mortem Auctoris editit Carsten Niebuhr. Adjuncta est materia Medica Kahirina.’ (Heineck et Faber: Hauniae.)

Gaither, M. R., Toonen, R. J., Robertson, D. R., Planes, S., and Bowen, B. W. (2010). Genetic evaluation of marine biogeographical barriers: perspectives from two widespread Indo‐Pacific snappers (Lutjanus kasmira and Lutjanus fulvus). Journal of Biogeography 37, 133–147.
| Genetic evaluation of marine biogeographical barriers: perspectives from two widespread Indo‐Pacific snappers (Lutjanus kasmira and Lutjanus fulvus).Crossref | GoogleScholarGoogle Scholar |

Gallagher, S. J., Kitamura, A., Iryu, Y., Itaki, T., Koizumi, I., and Hoiles, P. W. (2015). The Pliocene to recent history of the Kuroshio and Tsushima Currents: a multi-proxy approach. Progress in Earth and Planetary Science 2, 17.
| The Pliocene to recent history of the Kuroshio and Tsushima Currents: a multi-proxy approach.Crossref | GoogleScholarGoogle Scholar |

Gibbes, L. R. (1850). On the carcinological collections of the United States: and an enumeration of species contained in them, with notes on the most remarkable and descriptions of new species. Proceedings of the American Association for the Advancement of Science 3, 165–201.

Giri, F., and Collins, P. A. (2004). A geometric morphometric analysis of two sympatric species of the family Aeglidae (Crustacea, Decapoda, Anomura) from the La Plata basin. The Italian Journal of Zoology 71, 85–88.
| A geometric morphometric analysis of two sympatric species of the family Aeglidae (Crustacea, Decapoda, Anomura) from the La Plata basin.Crossref | GoogleScholarGoogle Scholar |

Gopal, K., Tolley, K. A., Groeneveld, J. C., and Matthee, C. A. (2006). Mitochondrial DNA variation in spiny lobster Palinurus delagoae suggests genetically structured populations in the southwestern Indian Ocean. Marine Ecology Progress Series 319, 191–198.
| Mitochondrial DNA variation in spiny lobster Palinurus delagoae suggests genetically structured populations in the southwestern Indian Ocean.Crossref | GoogleScholarGoogle Scholar |

Gopurenko, D., and Hughes, J. M. (2002). Regional patterns of genetic structure among Australian populations of the mud crab, Scylla serrata (Crustacea: Decapoda): evidence from mitochondrial DNA. Marine and Freshwater Research 53, 849–857.
| Regional patterns of genetic structure among Australian populations of the mud crab, Scylla serrata (Crustacea: Decapoda): evidence from mitochondrial DNA.Crossref | GoogleScholarGoogle Scholar |

Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41, 95–98.

Harris, G. P., Davies, P., Nunez, M., and Meyers, G. (1988). Interannual variability in climate and fisheries in Tasmania. Nature 333, 754.
| Interannual variability in climate and fisheries in Tasmania.Crossref | GoogleScholarGoogle Scholar |

Haswell, W. A. (1879). On the Australian species of Penaeus, in the Macleay Museum, Sydney. Proceedings of the Linnean Society of New South Wales 4, 38–44.
| On the Australian species of Penaeus, in the Macleay Museum, Sydney.Crossref | GoogleScholarGoogle Scholar |

Heethoff, M. (2018). Cryptic species: conceptual or terminological chaos? A response to Struck et al. Trends in Ecology & Evolution 33, 310.
| Cryptic species: conceptual or terminological chaos? A response to Struck et al.Crossref | GoogleScholarGoogle Scholar |

Hocutt, C. H. (1987). Evolution of the Indian Ocean and the drift of India: a vicariant event. Hydrobiologia 150, 203–223.
| Evolution of the Indian Ocean and the drift of India: a vicariant event.Crossref | GoogleScholarGoogle Scholar |

Holthuis, L. B., and Gottlieb, E. (1958). An annotated list of the decapod Crustacea of the Mediterranean coast of Israel, with an appendix listing the Decapoda of the eastern Mediterranean. Bulletin of the Research Council of Israel 7B, 1–126.

Hultgren, K. M., and Brandt, A. (2015). Taxonomy and phylogenetics of the Synalpheus paraneptunus-species-complex (Decapoda: Alpheidae), with a description of two new species. Journal of Crustacean Biology 35, 547–558.
| Taxonomy and phylogenetics of the Synalpheus paraneptunus-species-complex (Decapoda: Alpheidae), with a description of two new species.Crossref | GoogleScholarGoogle Scholar |

Hultgren, K. M., Hurt, C., and Anker, A. (2014). Phylogenetic relationships within the snapping shrimp genus Synalpheus (Decapoda: Alpheidae). Molecular Phylogenetics and Evolution 77, 116–125.
| Phylogenetic relationships within the snapping shrimp genus Synalpheus (Decapoda: Alpheidae).Crossref | GoogleScholarGoogle Scholar | 24680914PubMed |

Hurt, C., Hultgren, K., Anker, A., Lemmon, A. R., Lemmon, E. M., and Bracken-Grissom, H. (2021). First worldwide molecular phylogeny of the morphologically and ecologically hyperdiversified snapping shrimp genus Alpheus (Malacostraca: Decapoda). Molecular Phylogenetics and Evolution 158, 107080.
| First worldwide molecular phylogeny of the morphologically and ecologically hyperdiversified snapping shrimp genus Alpheus (Malacostraca: Decapoda).Crossref | GoogleScholarGoogle Scholar | 33482381PubMed |

Hyžný, M., Kroh, A., Ziegler, A., Anker, A., Košťák, M., Schlögl, J., Culka, A., Jagt, J. W., Fraaije, R. H., Harzhauser, M., and Van Bakel, B. W. (2017). Comprehensive analysis and reinterpretation of Cenozoic mesofossils reveals ancient origin of the snapping claw of alpheid shrimps. Scientific Reports 7, 4076.
| Comprehensive analysis and reinterpretation of Cenozoic mesofossils reveals ancient origin of the snapping claw of alpheid shrimps.Crossref | GoogleScholarGoogle Scholar | 28642499PubMed |

Iryu, Y., Matsuda, H., Machiyama, H., Piller, W. E., Quinn, T. M., and Mutti, M. (2006). Introductory perspective on the COREF Project. The Island Arc 15, 393–406.
| Introductory perspective on the COREF Project.Crossref | GoogleScholarGoogle Scholar |

Karanovic, T., Djurakic, M., and Eberhard, S. M. (2016). Cryptic species or inadequate taxonomy? Implementation of 2D geometric morphometrics based on integumental organs as landmarks for delimitation and description of copepod taxa. Systematic Biology 65, 304–327.
| Cryptic species or inadequate taxonomy? Implementation of 2D geometric morphometrics based on integumental organs as landmarks for delimitation and description of copepod taxa.Crossref | GoogleScholarGoogle Scholar | 26608965PubMed |

Keyse, J., Crandall, E. D., Toonen, R. J., Meyer, C. P., Treml, E. A., and Riginos, C. (2014). The scope of published population genetic data for Indo-Pacific marine fauna and future research opportunities in the region. Bulletin of Marine Science 90, 47–78.
| The scope of published population genetic data for Indo-Pacific marine fauna and future research opportunities in the region.Crossref | GoogleScholarGoogle Scholar |

Kingsley, J. S. (1878). A synopsis of North American species of the genus Alpheus, VII. Bulletin of the United States Geological and Geographical Survey 4, 189–199.

Kitamura, A., and Ubukata, T. (2003). The sequence of local recolonization of warm water marine molluscan species during a deglacial warming climate phase: a case study from the early Pleistocene of the Sea of Japan. Palaeogeography, Palaeoclimatology, Palaeoecology 199, 83–94.
| The sequence of local recolonization of warm water marine molluscan species during a deglacial warming climate phase: a case study from the early Pleistocene of the Sea of Japan.Crossref | GoogleScholarGoogle Scholar |

Knowlton, N. (1986). Cryptic and sibling species among the decapod Crustacea. Journal of Crustacean Biology 6, 356–363.
| Cryptic and sibling species among the decapod Crustacea.Crossref | GoogleScholarGoogle Scholar |

Kumar, S., Stecher, G., Li, M., Knyaz, C., and Tamura, K. (2018). MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution 35, 1547–1549.
| MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms.Crossref | GoogleScholarGoogle Scholar | 29722887PubMed |

Lacson, J. M., and Clark, S. (1995). Genetic divergence of Maldivian and Micronesian demes of the damselfishes Stegastes nigricans, Chrysiptera biocellata, C. glauca and C. leucopoma (Pomacentridae). Marine Biology 121, 585–590.
| Genetic divergence of Maldivian and Micronesian demes of the damselfishes Stegastes nigricans, Chrysiptera biocellata, C. glauca and C. leucopoma (Pomacentridae).Crossref | GoogleScholarGoogle Scholar |

Lavery, S. D., Farhadi, A., Farahmand, H., Chan, T. Y., Azhdehakoshpour, A., Thakur, V., and Jeffs, A. G. (2014). Evolutionary divergence of geographic subspecies within the scalloped spiny lobster Panulirus homarus (Linnaeus 1758). PLoS One 9, e97247.
| Evolutionary divergence of geographic subspecies within the scalloped spiny lobster Panulirus homarus (Linnaeus 1758).Crossref | GoogleScholarGoogle Scholar | 24892781PubMed |

Linnaeus, C. (1758). ‘Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis.’ Editio decima, reformata [10th revised edn] 1, 824 pp. (Laurentii Salvii: Stockholm.)

Marchiori, A. B., Bartholomei-Santos, M. L., and Santos, S. (2014). Intraspecific variation in Aegla longirostri (Crustacea: Decapoda: Anomura) revealed by geometric morphometrics: evidence for ongoing speciation? Biological Journal of the Linnean Society. Linnean Society of London 112, 31–39.
| Intraspecific variation in Aegla longirostri (Crustacea: Decapoda: Anomura) revealed by geometric morphometrics: evidence for ongoing speciation?Crossref | GoogleScholarGoogle Scholar |

Mathews, L. M. (2006). Cryptic biodiversity and phylogeographic patterns in a snapping shrimp species complex. Molecular Ecology 15, 4049–4063.
| Cryptic biodiversity and phylogeographic patterns in a snapping shrimp species complex.Crossref | GoogleScholarGoogle Scholar | 17054502PubMed |

Mathews, L. M., and Anker, A. (2009). Molecular phylogeny reveals extensive ancient and ongoing radiations in a snapping shrimp species complex (Crustacea, Alpheidae, Alpheus armillatus). Molecular Phylogenetics and Evolution 50, 268–281.
| Molecular phylogeny reveals extensive ancient and ongoing radiations in a snapping shrimp species complex (Crustacea, Alpheidae, Alpheus armillatus).Crossref | GoogleScholarGoogle Scholar | 19041948PubMed |

Mathews, L. M., Schubart, C. D., Neigel, J. E., and Felder, D. L. (2002). Genetic, ecological, and behavioural divergence between two sibling snapping shrimp species (Crustacea: Decapoda: Alpheus). Molecular Ecology 11, 1427–1437.
| Genetic, ecological, and behavioural divergence between two sibling snapping shrimp species (Crustacea: Decapoda: Alpheus).Crossref | GoogleScholarGoogle Scholar | 12144663PubMed |

McMillan, W. O., and Palumbi, S. R. (1995). Concordant evolutionary patterns among Indo-West Pacific butterflyfishes. Proceedings of the Royal Society of London. Series B, Biological Sciences 260, 229–236.
| Concordant evolutionary patterns among Indo-West Pacific butterflyfishes.Crossref | GoogleScholarGoogle Scholar |

Miller, M. A., Pfeiffer, W., and Schwartz, T. (2010). Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In ‘Proceedings of the Gateway Computing Environments Workshop (GCE)’, 14 November 2010, New Orleans, LA, USA, pp. 1–8. (IEEE: New Orleans, LA, USA.)
| Crossref |

Milne Edwards, H. (1837). ‘Histoire naturelle des Crustacés, comprenant l’anatomie, la physiologie et la classification de ces animaux.’ (Librairie Encyclopédique de Roret: Paris, France.)

Potter, P. E., and Szatmari, P. (2009). Global Miocene tectonics and the modern world. Earth-Science Reviews 96, 279–295.
| Global Miocene tectonics and the modern world.Crossref | GoogleScholarGoogle Scholar |

Qiu, B. (2001). Kuroshio and Oyashio Currents. In ‘Ocean currents: a derivative of the encyclopedia of ocean sciences’. (Eds J. S. Steele, A. Thorpe, K. K. Turekian.) pp. 1–647. (Academic Press.)

Rafinesque, C. S. (1815). Analyse de la Nature ou Tableau de l’Univers et des corps organisés. Aux dépens de l’auteur. Palerme.

Rambaut, A., Suchard, M. A., Xie, D., and Drummond, A. J. (2014). Tracer v.1.6. Available at http://beast.bio.ed.ac.uk/Tracer [verified October 2018].

Rathbun, M. J. (1900). Results of the Branner-Agassiz expedition to Brazil. I. The decapod and stomatopod Crustacea. In ‘Proceedings of the Washington Academy of Sciences, Vol. 2’. pp. 133–156. (Washington Academy of Sciences.)

Ridley, M. (2006). ‘Evolução’, 3rd edn. (Artmed: Porto Alegre, Brazil.)

Romanov, E., Potier, M., Zamorov, V., and Ménard, F. (2009). The swimming crab Charybdis smithii: distribution, biology and trophic role in the pelagic ecosystem of the western Indian Ocean. Marine Biology 156, 1089–1107.
| The swimming crab Charybdis smithii: distribution, biology and trophic role in the pelagic ecosystem of the western Indian Ocean.Crossref | GoogleScholarGoogle Scholar |

Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M. A., and Huelsenbeck, J. P. (2012). MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61, 539–542.
| MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.Crossref | GoogleScholarGoogle Scholar | 22357727PubMed |

Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989). ‘Molecular Cloning: A Laboratory Manual’, 2nd edn. (Cold Spring Harbor Laboratory Press: New York, NY, USA.)

Schubart, C. D., Cuesta, J. A., and Felder, D. L. (2002). Glyptograpsidae, a new brachyuran family from Central America: larval and adult morphology, and a molecular phylogeny of the Grapsoidea. Journal of Crustacean Biology 22, 28–44.
| Glyptograpsidae, a new brachyuran family from Central America: larval and adult morphology, and a molecular phylogeny of the Grapsoidea.Crossref | GoogleScholarGoogle Scholar |

Shankar, D., Vinayachandran, P. N., and Unnikrishnan, A. S. (2002). The monsoon currents in the north Indian Ocean. Progress in Oceanography 52, 63–120.
| The monsoon currents in the north Indian Ocean.Crossref | GoogleScholarGoogle Scholar |

Soledade, G. O., Terossi, M., Scioli, J. A., Mantelatto, F. L., and Almeida, A. O. (2019). A new western Atlantic snapping shrimp of the Alpheus macrocheles group (Caridea, Alpheidae) revealed by morphological, molecular and color data. European Journal of Taxonomy 581, 1–21.
| A new western Atlantic snapping shrimp of the Alpheus macrocheles group (Caridea, Alpheidae) revealed by morphological, molecular and color data.Crossref | GoogleScholarGoogle Scholar |

Sotka, E. E. (2012). Natural selection, larval dispersal, and the geography of phenotype in the sea. Integrative and Comparative Biology 52, 538–545.
| Natural selection, larval dispersal, and the geography of phenotype in the sea.Crossref | GoogleScholarGoogle Scholar | 22634357PubMed |

Spalding, M. D., Fox, H. E., Allen, G. R., Davidson, N., Ferdaña, Z. A., Finlayson, M., Halpern, B. S., Jorge, M. A., Lombana, A. L., Lourie, S. A., and Martin, K. D. (2007). Marine ecoregions of the world: a bioregionalization of coastal and shelf areas. Bioscience 57, 573–583.
| Marine ecoregions of the world: a bioregionalization of coastal and shelf areas.Crossref | GoogleScholarGoogle Scholar |

Spence Bate, C. S. (1888). Report on the Crustacea Macrura dredged by H. M. S. Challenger during the years 1873–76. In ‘The voyage of H.M.S. Challenger’. Zoology 24. pp. 1–942. (Eyre & Spottiswoode: London, UK.)

Springer, V. G. (1982). Pacific plate biogeography, with special reference to shorefishes. Smithsonian Contributions to Zoology 367, 1–182.
| Pacific plate biogeography, with special reference to shorefishes.Crossref | GoogleScholarGoogle Scholar |

Struck, T. H., Feder, J. L., Bendiksby, M., Birkeland, S., Cerca, J., Gusarov, V. I., Kistenich, S., Larsson, K. H., Liow, L. H., Nowak, M. D., and Stedje, B. (2018). Finding evolutionary processes hidden in cryptic species. Trends in Ecology & Evolution 33, 153–163.
| Finding evolutionary processes hidden in cryptic species.Crossref | GoogleScholarGoogle Scholar |

Thorpe, J. P., Solé-Cava, A. M., and Watts, P. C. (2000). Exploited marine invertebrates: genetics and fisheries. Hydrobiologia 420, 165–184.
| Exploited marine invertebrates: genetics and fisheries.Crossref | GoogleScholarGoogle Scholar |

Tomida, S., and Kitao, F. (2002). Occurrence of Hartungia (Gastropoda: Janthinidae) from the Tonohama Group, Kochi Prefecture, Japan. Bulletin Mizunami Fossil Museum 29, 157–160.

Tomida, S., Akazaki, H., and Kawano, T. (2013). A janthinid gastropod from Late Neogene Miyazaki Group of Southwestern Japan, and a status of Hartungia. Bulletin of the Mizunami Fossil Museum 3, 59–63.

Tsang, L. M., Achituv, Y., Chu, K. H., and Chan, B. K. K. (2012). Zoogeography of intertidal communities in the West Indian Ocean as determined by ocean circulation systems: patterns from the Tetraclita barnacles. PLoS One 7, e45120.
| Zoogeography of intertidal communities in the West Indian Ocean as determined by ocean circulation systems: patterns from the Tetraclita barnacles.Crossref | GoogleScholarGoogle Scholar | 23024801PubMed |

Tsuchiya, M., Nadaoka, K., Kayanne, H., and Yamano, H. (2004). ‘Coral reefs of Japan.’ (Ministry of the Environment: Tokyo, Japan.)

Ward, R. D., Ovenden, J. R., Meadows, J. R., Grewe, P. M., and Lehnert, S. A. (2006). Population genetic structure of the brown tiger prawn, Penaeus esculentus, in tropical northern Australia. Marine Biology 148, 599–607.
| Population genetic structure of the brown tiger prawn, Penaeus esculentus, in tropical northern Australia.Crossref | GoogleScholarGoogle Scholar |

Williams, S. T., and Benzie, J. A. H. (1998). Evidence of a biogeographic break between populations of a high dispersal starfish: congruente regions within the Indo-West Pacific defined by colour morphs, mtDNA and allozyme data. Evolution 52, 87–99.
| Evidence of a biogeographic break between populations of a high dispersal starfish: congruente regions within the Indo-West Pacific defined by colour morphs, mtDNA and allozyme data.Crossref | GoogleScholarGoogle Scholar | 28568135PubMed |

Williams, S. T., Knowlton, N., and Weight, L. A. (1999). Indo-Pacific molecular biogeography of the coral-dwelling snapping shrimp Alpheus lottini (Decapoda: Caridea: Alpheidae). In ‘Ecology of the Chagos Archipelago’. Linnean Society Occasional Publications 2. (Eds C. R. C. Sheppard and M. R. D. Seaward.) pp. 195–206. (Linnean Society: London, UK.)

Williams, S. T., Knowlton, N., Weigt, L. A., and Jara, J. A. (2001). Evidence for three major clades within the snapping shrimp genus Alpheus inferred from nuclear and mitochondrial gene sequence data. Molecular Phylogenetics and Evolution 20, 375–389.
| Evidence for three major clades within the snapping shrimp genus Alpheus inferred from nuclear and mitochondrial gene sequence data.Crossref | GoogleScholarGoogle Scholar | 11527465PubMed |

Wirtz, P. (2004). Four amphi-Atlantic shrimps new for São Tomé and Príncipe (eastern central Atlantic). Arquipélago Life and Marine Science 21A, 83–85.

Yang, H. J., and Anker, A. (2003). New records of alpheid shrimps (Decapoda, Caridea, Alpheidae) from Korea. Korean Journal of Systematic Zoology 19, 1–9.

Zhang, J., Yao, J. T., Sun, Z. M., Fu, G., Galanin, D. A., Nagasato, C., Motomura, T., Hu, Z. M., and Duan, D. L. (2015). Phylogeographic data revealed shallow genetic structure in the kelp Saccharina japonica (Laminariales, Phaeophyta). BMC Evolutionary Biology 15, 237.
| Phylogeographic data revealed shallow genetic structure in the kelp Saccharina japonica (Laminariales, Phaeophyta).Crossref | GoogleScholarGoogle Scholar | 26525408PubMed |