A data-driven method for selecting candidate reference sites for stream bioassessment programs using generalised dissimilarity models
P. M. Rose A D , M. J. Kennard A , F. Sheldon A , D. B. Moffatt B and G. L. Butler CA Australian Rivers Institute, Griffith University, Kessels Road, Nathan, Qld 4111, Australia.
B Department of Science, Information Technology, Innovation and the Arts, EcoSciences Precinct, GPO Box 5078, Brisbane, Qld 4001, Australia.
C NSW Department of Primary Industries, Grafton Fisheries Centre, Private Mail Bag 2, Grafton, NSW 2460, Australia.
D Corresponding author. Email: peter.rose@griffithuni.edu.au
Marine and Freshwater Research 67(4) 440-454 https://doi.org/10.1071/MF14254
Submitted: 27 August 2014 Accepted: 26 February 2015 Published: 9 July 2015
Abstract
Key issues with defining reference condition for stream bioassessment are (1) equivocal definitions of ‘minimally disturbed’ pressure criteria and wide-ranging approaches to site selection, (2) highly modified regions where near-pristine areas do not exist, leading to management decisions based on inconsistent and unquantified benchmarks and (3) costly field campaigns associated with ‘extensive spatial survey’ approaches. We used generalised dissimilarity modelling (GDM) to classify stream segments into ecotypes, and transparently and efficiently define candidate reference conditions for the Ecosystem Health Monitoring Program (EHMP) assessment area in south-eastern Queensland, a highly modified region with a complex biogeographic history. We modelled fish presence–absence data from 396 sites with GIS-based natural and anthropogenic predictors. Stream segments were classified into ecotypes using the GDM-transformed natural variables so that (1) reference-site selection adequately covered the β-diversity of the study area and (2) we could evaluate the validity of incorporating sites from neighbouring catchments outside of the EHMP assessment area. Relationships between selected anthropogenic variables (the river disturbance index and %stream connectivity) and fish assemblages were used to define pressure criteria and map candidate reference conditions. We conclude by describing a new framework that can be used to select indicator-specific reference sites by GDM and a stratified, probabilistic sampling design.
Additional keywords: beta-diversity, biogeography, biomonitoring, freshwater fish, species turnover.
References
Abal, E. G., Dennison, W. C., and Bunn, S. E. (2005). Chapter 2: setting. In ‘Healthy Waterways Healthy Catchments: Making the Connection in South East Queensland, Australia’. (Eds E. G. Abal, W. C. Dennison and S. E. Bunn.) pp. 13–34. (Moreton Bay Waterways and Catchments Partnership: Brisbane.)Alexander, G. G., and Allan, J. D. (2006). Stream restoration in the Upper Midwest, USA. Restoration Ecology 14, 595–604.
| Stream restoration in the Upper Midwest, USA.Crossref | GoogleScholarGoogle Scholar |
Anderson, M. J. (2001). A new method for non‐parametric multivariate analysis of variance. Austral Ecology 26, 32–46.
Angradi, T. R., Pearson, M. S., Jicha, T. M., Taylor, D. L., Bolgrien, D. W., Moffett, M. F., Blocksom, K. A., and Hill, B. A. (2009). Using stressor gradients to determine reference expectations for great river fish assemblages. Ecological Indicators 9, 748–764.
| Using stressor gradients to determine reference expectations for great river fish assemblages.Crossref | GoogleScholarGoogle Scholar |
Anon. (2013). The Northern Rivers Region. Available at http://www.northern.cma.nsw.gov.au/about/our-region [Verified 8 August 2013]
Ashcroft, M. B., Gollan, J. R., Faith, D. P., Carter, G. A., Lassau, S. A., Ginn, S. G., Bulbert, M. W., and Cassis, G. (2010). Using generalised dissimilarity models and many small samples to improve the efficiency of regional and landscape scale invertebrate sampling. Ecological Informatics 5, 124–132.
| Using generalised dissimilarity models and many small samples to improve the efficiency of regional and landscape scale invertebrate sampling.Crossref | GoogleScholarGoogle Scholar |
Baattrup-Pedersen, A., Kristensen, E. A., Jorgensen, J., Skriver, J., Kronvang, B., Andersen, H. E., Hoffman, C. C., and Larsen, L. M. K. (2009). Can a priori defined reference criteria be used to select reference sites in Danish streams? Implications for implementing the Water Framework Directive. Journal of Environmental Monitoring 11, 344–352.
| Can a priori defined reference criteria be used to select reference sites in Danish streams? Implications for implementing the Water Framework Directive.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXhs1Cmsbk%3D&md5=0cbe30c7c6389f5fec2a31b417f2d481CAS | 19212592PubMed |
Breiman, L. (2001). Random forests. Machine Learning 45, 5–32.
| Random forests.Crossref | GoogleScholarGoogle Scholar |
Buisson, L., Blanc, L., and Grenouillet, G. (2008). Modelling stream fish species distribution in a river network: the relative effects of temperature versus physical factors. Ecology Freshwater Fish 17, 244–257.
| Modelling stream fish species distribution in a river network: the relative effects of temperature versus physical factors.Crossref | GoogleScholarGoogle Scholar |
Bunn, S., and Davies, P. (2000). Biological processes in running waters and their implications for the assessment of ecological integrity. Hydrobiologia 422/423, 61–70.
| Biological processes in running waters and their implications for the assessment of ecological integrity.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXlvVams7w%3D&md5=14acde1a7173683195cd2d27f6414490CAS |
Bunn, S. E., Abal, E. G., Smith, M. J., Choy, S. C., Fellows, C. S., Harch, B. D., Kennard, M. J., and Sheldon, F. (2010). Integration of science and monitoring of river ecosystem health to guide investments in catchment protection and rehabilitation. Freshwater Biology 55, 223–240.
| Integration of science and monitoring of river ecosystem health to guide investments in catchment protection and rehabilitation.Crossref | GoogleScholarGoogle Scholar |
Cardoso, P., Erwin, T. L., Borges, P. A. V., and New, T. R. (2011). The seven impediments in invertebrate conservation and how to overcome them. Biological Conservation 144, 2647–2655.
| The seven impediments in invertebrate conservation and how to overcome them.Crossref | GoogleScholarGoogle Scholar |
Chaves, M. L., Costa, J. L., Chainho, P., Costa, M. J., and Prat, N. (2006). Selection and validation of reference sites in small river basins. Hydrobiologia 573, 133–154.
| Selection and validation of reference sites in small river basins.Crossref | GoogleScholarGoogle Scholar |
Chessman, B. C. (2006). Prediction of riverine fish assemblages through the concept of environmental filters. Marine and Freshwater Research 57, 601–609.
| Prediction of riverine fish assemblages through the concept of environmental filters.Crossref | GoogleScholarGoogle Scholar |
Chessman, B. C., and Royal, M. J. (2004). Bioassessment without reference sites: use of environmental filters to predict natural assemblages of river macroinvertebrates. Journal of the North American Benthological Society 23, 599–615.
| Bioassessment without reference sites: use of environmental filters to predict natural assemblages of river macroinvertebrates.Crossref | GoogleScholarGoogle Scholar |
Chiew, F. H. S., Piechota, T. C., Dracup, J. A., and McMahon, T. A. (1998). El Niño/Southern Oscillation and Australian rainfall, streamflow and drought: links and potential forecasting. Journal of Hydrology 204, 138–149.
| El Niño/Southern Oscillation and Australian rainfall, streamflow and drought: links and potential forecasting.Crossref | GoogleScholarGoogle Scholar |
Collier, K., Haigh, A., and Kelly, J. (2007). Coupling GIS and mulitvariate approaches to reference site selection for wadeable stream monitoring. Environmental Monitoring and Assessment 127, 29–45.
| Coupling GIS and mulitvariate approaches to reference site selection for wadeable stream monitoring.Crossref | GoogleScholarGoogle Scholar | 16897508PubMed |
Davies, P. E., Harris, J. H., Hillman, T. J., and Walker, K. F. (2010). The sustainable rivers audit: assessing river ecosystem health in the Murray Darling Basin, Australia. Marine and Freshwater Research 61, 764–777.
| The sustainable rivers audit: assessing river ecosystem health in the Murray Darling Basin, Australia.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3cXptFGrs7Y%3D&md5=2df41517117c9b8a2e0d9d6714a472f2CAS |
Dudgeon, D., Arthington, A. H., Gessner, M. O., Kawabata, Z. I., Knowler, D. J., Lévêque, C., Naiman, R. J., Prieur-Richard, A., Soto, D., Stiassny, M. L. J., and Sullivan, C. A. (2006). Freshwater biodiversity: importance, threats, status and conservation challenges. Biological Reviews of the Cambridge Philosophical Society 81, 163–182.
| Freshwater biodiversity: importance, threats, status and conservation challenges.Crossref | GoogleScholarGoogle Scholar | 16336747PubMed |
Dufrêne, M., and Legendre, P. (1997). Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecological Monographs 67, 345–366.
EHMP (2008). Ecosystem Health Monitoring Program 2006–07 annual technical report: freshwater methods. Available at http://healthywaterways.org/_uploads/ehmp/FileLibrary/freshw_methodsfishi.pdf [Verified 8 August 2013].
Ellis, N., Smith, S. J., and Pitcher, C. R. (2012). Gradient forests: calculating importance gradients on physical predictors. Ecology 93, 156–168.
| Gradient forests: calculating importance gradients on physical predictors.Crossref | GoogleScholarGoogle Scholar | 22486096PubMed |
Ferrier, S., Manion, G., Elith, J., and Richardson, K. (2007). Using generalized dissimilarity modelling to analyse and predict patterns of beta diversity in regional biodiversity assessment. Diversity & Distributions 13, 252–264.
| Using generalized dissimilarity modelling to analyse and predict patterns of beta diversity in regional biodiversity assessment.Crossref | GoogleScholarGoogle Scholar |
Geoscience Australia (2011). National Environmental Stream Attributes v1.1.5. Available at http://www.ga.gov.au/metadata-gateway/metadata/record/gcat_73045 [Verified 1 March 2014]
Growns, I. (2009). Differences in Ecotypeal classifications among four aquatic biotic groups: Implications for conservation reserve design and monitoring programs. Journal of Environmental Management 90, 2652–2658.
| Differences in Ecotypeal classifications among four aquatic biotic groups: Implications for conservation reserve design and monitoring programs.Crossref | GoogleScholarGoogle Scholar | 19285374PubMed |
Growns, I., Rourke, M., and Gilligan, D. (2013). Toward river health assessment using species distributional modeling. Ecological Indicators 29, 138–144.
| Toward river health assessment using species distributional modeling.Crossref | GoogleScholarGoogle Scholar |
Hartley, S. B., and Creese, R. (2004). ‘NSW DPI Freshwater Fish Research Database.’ (Port Stepehens Fisheries Centre: Nelson Bay, NSW.)
Hawkins, C. P., Olson, J. R., and Hill, R. A. (2010). The reference condition: predicting benchmarks for ecological and water-quality assessments. Journal of the North American Benthological Society 29, 312–343.
| The reference condition: predicting benchmarks for ecological and water-quality assessments.Crossref | GoogleScholarGoogle Scholar |
Hill, R. A., and Hawkins, C. P. (2014). Using modelled stream temperatures to predict macro‐spatial patterns of stream invertebrate biodiversity. Freshwater Biology 59, 2632–2644.
| Using modelled stream temperatures to predict macro‐spatial patterns of stream invertebrate biodiversity.Crossref | GoogleScholarGoogle Scholar |
Hoeinghaus, D. J., Winemiller, K. O., and Birnbaum, J. S. (2007). Local and regional determinants of stream fish assemblage structure: inferences based on taxonomic vs. functional groups. Journal of Biogeography 34, 324–338.
| Local and regional determinants of stream fish assemblage structure: inferences based on taxonomic vs. functional groups.Crossref | GoogleScholarGoogle Scholar |
Horwitz, R. J. (1978). Temporal variability patterns and the distributional patterns of stream fishes. Ecological Monographs 48, 307–321.
| Temporal variability patterns and the distributional patterns of stream fishes.Crossref | GoogleScholarGoogle Scholar |
Jackson, D. A., Peres-Neto, P. R., and Olden, J. D. (2001). What controls who is where in freshwater fish communities-the roles of biotic, abiotic, and spatial factors. Canadian Journal of Fisheries and Aquatic Sciences 58, 157–170.
Jerry, D. R., and Woodland, D. J. (1997). Electrophoretic evidence for the presence of the undescribed Bellinger catfish (Tandanus sp.) (Teleostei: Plotosidae) in four New South Wales mid-northern coastal rivers. Marine and Freshwater Research 48, 235–240.
| Electrophoretic evidence for the presence of the undescribed Bellinger catfish (Tandanus sp.) (Teleostei: Plotosidae) in four New South Wales mid-northern coastal rivers.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK2sXks1eitrY%3D&md5=9aea059d9feade4e78f5440a05e6d14dCAS |
Joy, M. (2013). Freshwater Fish Predictive Modelling for Bioassessment; a Scoping Study into Fish Bioassessment Models as National Indicators in New Zealand. Available at http://www.mfe.govt.nz/publications/ser/freshwater-fish-predictive-modelling-bioassessment-scoping-study.html [Verified 26 August 2014]
Joy, M. K., and Death, R. G. (2004). Predictive modelling and spatial mapping of freshwater fish and decapod assemblages using GIS and neural networks. Freshwater Biology 49, 1036–1052.
| Predictive modelling and spatial mapping of freshwater fish and decapod assemblages using GIS and neural networks.Crossref | GoogleScholarGoogle Scholar |
Kennard, M. J., Arthington, A. H., Pusey, B. J., and Harch, B. D. (2005). Are alien fish a reliable indicator of river health? Freshwater Biology 50, 174–193.
| Are alien fish a reliable indicator of river health?Crossref | GoogleScholarGoogle Scholar |
Kennard, M., Pusey, B., Arthington, A., Harch, B., and Mackay, S. (2006a). Development and application of a predictive model of freshwater fish assemblage composition to evaluate river health in eastern Australia. Hydrobiologia 572, 33–57.
| Development and application of a predictive model of freshwater fish assemblage composition to evaluate river health in eastern Australia.Crossref | GoogleScholarGoogle Scholar |
Kennard, M. J., Pusey, B. J., Harch, B. D., Dore, E., and Arthington, A. H. (2006b). Estimating local stream fish assemblage attributes: sampling effort and efficiency at two spatial scales. Marine and Freshwater Research 57, 635–653.
| Estimating local stream fish assemblage attributes: sampling effort and efficiency at two spatial scales.Crossref | GoogleScholarGoogle Scholar |
Kennard, M. J., Olden, J. D., Arthington, A. H., Pusey, B. J., and Poff, N. L. (2007). Multiscale effects of flow regime and habitat and their interaction on fish assemblage structure in eastern Australia. Canadian Journal of Fisheries and Aquatic Sciences 64, 1346–1359.
| Multiscale effects of flow regime and habitat and their interaction on fish assemblage structure in eastern Australia.Crossref | GoogleScholarGoogle Scholar |
Kennard, M. J., Pusey, B. J., Olden, J. D., Mackay, S. J., Stein, J. L., and Marsh, N. (2010). Classification of natural flow regimes in Australia to support environmental flow management. Freshwater Biology 55, 171–193.
| Classification of natural flow regimes in Australia to support environmental flow management.Crossref | GoogleScholarGoogle Scholar |
Koubbi, P., Moteki, M., Duhamel, G., Goarant, A., and Hulley, P. A. (2011). Ecotypealization of myctophid fish in the Indian sector of the Southern Ocean: results from generalized dissimilarity models. Deep-sea Research. Part II, Topical Studies in Oceanography 58, 170–180.
| Ecotypealization of myctophid fish in the Indian sector of the Southern Ocean: results from generalized dissimilarity models.Crossref | GoogleScholarGoogle Scholar |
Lake, P. S., Bond, N., and Reich, P. (2007). Linking ecological theory with stream restoration. Freshwater Biology 52, 597–615.
| Linking ecological theory with stream restoration.Crossref | GoogleScholarGoogle Scholar |
Leathwick, J. R., Snelder, T., Chadderton, W. L., Elith, J., Julian, K., and Ferrier, S. (2011). Use of generalised dissimilarity modelling to improve the biological discrimination of river and stream classifications. Freshwater Biology 56, 21–38.
| Use of generalised dissimilarity modelling to improve the biological discrimination of river and stream classifications.Crossref | GoogleScholarGoogle Scholar |
MacArthur, R. H., and Wilson, E. O. (1967). ‘The Theory of Island Biogeography.’ (Princeton University Press: Princeton, NJ, USA.)
Maechler, M. (2013). Package ‘Cluster’. Available at http://cran.r-project.org/web/packages/cluster/cluster.pdf [Verified 14 August 2013]
Maxted, J. R., Barbour, M. T., Gerritsen, J., Poretti, V., Primrose, N., Silvia, A., Penrose, D., and Renfrow, R. (2000). Assessment framework for mid-Atlantic coastal plain streams using benthic macroinvertebrates. Journal of the North American Benthological Society 19, 128–144.
| Assessment framework for mid-Atlantic coastal plain streams using benthic macroinvertebrates.Crossref | GoogleScholarGoogle Scholar |
McCormick, F. H., Peck, D. V., and Larsen, D. P. (2000). Comparison of geographic classification schemes for Mid-Atlantic stream fish assemblages. Journal of the North American Benthological Society 19, 385–404.
| Comparison of geographic classification schemes for Mid-Atlantic stream fish assemblages.Crossref | GoogleScholarGoogle Scholar |
McGlashan, D. J., and Hughes, J. M. (2000). Reconciling patterns of genetic variation with stream structure, earth history and biology in the Australian freshwater fish Craterocephalus stercusmuscarum (Atherinidae). Molecular Ecology 9, 1737–1751.
| Reconciling patterns of genetic variation with stream structure, earth history and biology in the Australian freshwater fish Craterocephalus stercusmuscarum (Atherinidae).Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DC%2BD3M%2FosVeltw%3D%3D&md5=31846550f06556c6e3201942726beaf4CAS | 11091310PubMed |
Mokany, K., and Ferrier, S. (2011). Predicting impacts of climate change on biodiversity: a role for semi-mechanistic community-level modelling. Diversity & Distributions 17, 374–380.
| Predicting impacts of climate change on biodiversity: a role for semi-mechanistic community-level modelling.Crossref | GoogleScholarGoogle Scholar |
Mykrä, H., Aroviita, J., Kotanen, J., Hämäläinen, H., and Muotka, T. (2008). Predicting the stream macroinvertebrate fauna across regional scales: influence of geographical extent on model performance. Journal of the North American Benthological Society 27, 705–716.
| Predicting the stream macroinvertebrate fauna across regional scales: influence of geographical extent on model performance.Crossref | GoogleScholarGoogle Scholar |
Oksanen, J., Guillaume, B. F., Kindt, R., Legendre, P., Minchin, P. R., O’Hara, R. B., Simpson, G. L., Solymos, P., Stevens, M. H. H., and Wagner, H. (2012). Vegan: Community Ecology Package. R Package Version 2.0-4. Available at http://CRAN.R-project.org/package=vegan [Verified 20 February 2014]
Olden, J. D., Joy, M. K., and Death, R. G. (2006). Rediscovering the species in community-wide predictive modelling. Ecological Applications 16, 1449–1460.
| Rediscovering the species in community-wide predictive modelling.Crossref | GoogleScholarGoogle Scholar | 16937810PubMed |
Olden, J. D., Kennard, M. J., Lawler, J. J., and Poff, N. L. (2011). Challenges and opportunities in implementing managed relocation for conservation of freshwater species. Conservation Biology 25, 40–47.
| Challenges and opportunities in implementing managed relocation for conservation of freshwater species.Crossref | GoogleScholarGoogle Scholar | 20666802PubMed |
Oliveira, J. M., Segurado, P., Santos, J. M., Teixeira, A., Ferreira, M. T., and Cortes, R. V. (2012). Modelling stream-fish functional traits in reference conditions: regional and local environmental correlates. PLoS One 7, e45787.
| Modelling stream-fish functional traits in reference conditions: regional and local environmental correlates.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XhsVelsbrE&md5=a6d9f489e41c9ea73aaebd0bcdb46ca8CAS | 23029242PubMed |
Olson, J. R., Hughes, D. L., Gore, J., and Brossett, M. P. (2009). Candidate reference conditions. In ‘Rapid Bioassessment of Stream Health’. (Eds D. L. Hughes, J. Gore, M. P. Brossett and J. R. Olson.) pp. 35–64. (CRC Press: Boca Raton, FL.)
Page, T. J., Sharma, S., and Hughes, J. M. (2004). Deep phylogenetic structure has conservation implications for ornate rainbowfish (Melanotaeniidae: Rhadinocentrus ornatus) in Queensland, eastern Australia. Marine and Freshwater Research 55, 165–172.
| Deep phylogenetic structure has conservation implications for ornate rainbowfish (Melanotaeniidae: Rhadinocentrus ornatus) in Queensland, eastern Australia.Crossref | GoogleScholarGoogle Scholar |
Peterson, E. E., Sheldon, F., Darnell, R., Bunn, S. E., and Harch, B. D. (2011). A comparison of spatially explicit landscape representation methods and their relationship to stream condition. Freshwater Biology 56, 590–610.
| A comparison of spatially explicit landscape representation methods and their relationship to stream condition.Crossref | GoogleScholarGoogle Scholar |
Pitcher, C. R., Lawton, P., Ellis, N., Smith, S. J., Incze, L. S., Wei, C., Greenlaw, M. E., Wolff, N. H., Sameoto, J. A., and Snelgrove, P. V. R. (2012). Exploring the role of environmental variables in shaping patterns of seabed biodiversity composition in regional-scale ecosystems. Journal of Applied Ecology 49, 670–679.
| Exploring the role of environmental variables in shaping patterns of seabed biodiversity composition in regional-scale ecosystems.Crossref | GoogleScholarGoogle Scholar |
Pusey, B., Kennard, M., and Arthington, A. (2004). ‘Freshwater fishes of north-eastern Australia.’ (CSIRO publishing: Melbourne.)
Roberts, D. W. (2012). labdsv: Ordination and Multivariate Analysis for Ecology. R Package Version 1.5-0. Available at http://CRAN.R-project.org/package=labdsv [Verified 20 February 2014]
Simpson, J., and Norris, R. (2000). Biological assessment of water quality: development of AUSRIVAS models and outputs. In ‘Assessing the Biological Quality of Freshwaters: RIVPACS and Other Techniques’. (Eds J. F. Wright, D. W. Sutcliffe and M. T. Furse.) pp. 125–143. (Freshwater Biological Association and Environment Agency: Ambleside, UK.)
Smith, M. J., Kay, W. R., Edward, D. H. D., Papas, P. J., Richardson, K. S. J., Simpson, J. C., Pinder, A. M., Cale, D. J., Horwitz, P. H. J., Davis, J. A., Yung, F. H., Norris, R. H., and Halse, S. A. (1999). AusRivAS: using macroinvertebrates to assess ecological condition of rivers in Western Australia. Freshwater Biology 41, 269–282.
| AusRivAS: using macroinvertebrates to assess ecological condition of rivers in Western Australia.Crossref | GoogleScholarGoogle Scholar |
Snelder, T., Lehmann, A., Lamouroux, N., Leathwick, J., and Allenbach, K. (2009). Strong influence of variable treatment on the performance of numerically defined ecological regions. Environmental Management 44, 658–670.
| Strong influence of variable treatment on the performance of numerically defined ecological regions.Crossref | GoogleScholarGoogle Scholar | 19688360PubMed |
Snelder, T., Lehmann, A., Lamouroux, N., Leathwick, J., and Allenbach, K. (2010). Effect of classification procedure on the performance of numerically defined ecological regions. Environmental Management 45, 939–952.
| Effect of classification procedure on the performance of numerically defined ecological regions.Crossref | GoogleScholarGoogle Scholar | 20300935PubMed |
Snelder, T., Ortiz, J., Booker, D., Lamouroux, N., Pella, H., and Shankar, U. (2012). Can bottom-up procedures improve the performance of stream classifications? Aquatic Sciences 74, 45–59.
| Can bottom-up procedures improve the performance of stream classifications?Crossref | GoogleScholarGoogle Scholar |
Stein, J. L., Stein, J. A., and Nix, H. A. (2002). Spatial analysis of anthropogenic river disturbance at regional and continental scales: identifying the wild rivers of Australia. Landscape and Urban Planning 60, 1–25.
| Spatial analysis of anthropogenic river disturbance at regional and continental scales: identifying the wild rivers of Australia.Crossref | GoogleScholarGoogle Scholar |
Stevens, D. L., and Olsen, A. R. (2004). Spatially-balanced sampling of natural resources. Journal of the American Statistical Association 99, 262–278.
| Spatially-balanced sampling of natural resources.Crossref | GoogleScholarGoogle Scholar |
Stewart-Koster, B., Kennard, M. J., Harch, B. D., Sheldon, F., Arthington, A. H., and Pusey, B. J. (2007). Partitioning the variation in stream fish assemblages within a spatio-temporal hierarchy. Marine and Freshwater Research 58, 675–686.
| Partitioning the variation in stream fish assemblages within a spatio-temporal hierarchy.Crossref | GoogleScholarGoogle Scholar |
Stoddard, J. L., Larsen, D. P., Hawkins, C. P., Johnson, R. K., and Norris, R. H. (2006). Setting expectations for the ecological condition of streams: the concept of reference condition. Ecological Applications 16, 1267–1276.
| Setting expectations for the ecological condition of streams: the concept of reference condition.Crossref | GoogleScholarGoogle Scholar | 16937796PubMed |
Tejerina-Garro, F. L., Maldonado, M., Ibañez, C., Pont, D., Roset, N., and Oberdorff, T. (2005). Effects of natural and anthropogenic environmental changes on riverine fish assemblages: a framework for ecological assessment of rivers. Brazilian Archives of Biology and Technology 48, 91–108.
| Effects of natural and anthropogenic environmental changes on riverine fish assemblages: a framework for ecological assessment of rivers.Crossref | GoogleScholarGoogle Scholar |
Thomassen, H. A., Cheviron, Z. A., Freedman, A. H., Harrigan, R. J., Wayne, R. K., Cameron, S. E., Schneider, C. J., Pollinger, J. P., Saatchi, S., Wayne, R. K., and Smith, T. B. (2010). Spatial modelling and landscape-level approaches for visualizing intra-specific variation. Molecular Ecology 19, 3532–3548.
| Spatial modelling and landscape-level approaches for visualizing intra-specific variation.Crossref | GoogleScholarGoogle Scholar | 20723053PubMed |
Tibshirani, R., Walther, G., and Hastie, T. (2001). Estimating the number of data clusters via the Gap statistic. Journal of the Royal Statistical Society. Series B. Methodological 63, 411–423.
| Estimating the number of data clusters via the Gap statistic.Crossref | GoogleScholarGoogle Scholar |
Unmack, P. J. (2001). Biogeography of Australian freshwater fishes. Journal of Biogeography 28, 1053–1089.
| Biogeography of Australian freshwater fishes.Crossref | GoogleScholarGoogle Scholar |
Van Sickle, J. (1997). Using mean similarity dendrograms to evaluate classifications. Journal of Agricultural Biological & Environmental Statistics 2, 370–388.
| Using mean similarity dendrograms to evaluate classifications.Crossref | GoogleScholarGoogle Scholar |
Van Sickle, J., Larsen, D. P., and Hawkins, C. P. (2007). Exclusion of rare taxa affects performance of the O/E index in bioassessments. Journal of the North American Benthological Society 26, 319–331.
| Exclusion of rare taxa affects performance of the O/E index in bioassessments.Crossref | GoogleScholarGoogle Scholar |
Vörösmarty, J. C., McIntyre, P. B., Gessner, M. O., Dudgeon, D., Prusevich, A., Green, P., Glidden, S., Bunn, S. E., Sullivan, C. A., and Liermann, C. R. (2010). Global threats to human water security and river biodiversity. Nature 467, 555–561.
| Global threats to human water security and river biodiversity.Crossref | GoogleScholarGoogle Scholar |
Wallin, M., Wiederholm, T., and Johnson, R. K. (2003). Guidance on establishing reference conditions and ecological status class boundaries for inland surface waters. Final report to the European Commission from CIS Working Group 2.3 – REFCOND. Available at http://www.minenv.gr/pinios/00/odhgia/7th_draft_refcond_final.pdf [Verified 18 August 2014]
Wong, B. B. M., Keogh, J. S., and McGlashan, D. J. (2004). Current and historical patterns of drainage connectivity in eastern Australia inferred from population genetic structuring in a widespread freshwater fish Pseudomugil signifer (Pseudomugilidae). Molecular Ecology 13, 391–401.
| Current and historical patterns of drainage connectivity in eastern Australia inferred from population genetic structuring in a widespread freshwater fish Pseudomugil signifer (Pseudomugilidae).Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DC%2BD2c%2FmtFyhsQ%3D%3D&md5=7aaa413860f31b529169d8c7fcc3b332CAS |
Yates, A., and Bailey, R. (2010). Selecting objectively defined reference sites for stream bioassessment programs. Environmental Monitoring and Assessment 170, 129–140.
| Selecting objectively defined reference sites for stream bioassessment programs.Crossref | GoogleScholarGoogle Scholar | 19902368PubMed |