Soilborne root disease pathogen complexes drive widespread decline of subterranean clover pastures across diverse climatic zones
Kevin Foster A , Ming Pei You A , Brett Nietschke B , Nick Edwards C and Martin J. Barbetti A DA School of Agriculture and Environment and the UWA Institute of Agriculture, Faculty of Science, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia.
B Barossa Improved Grazing Group, PO Box 44, Angaston, SA 5353, Australia.
C The Washpool, Avenue Range, SA 5273, Australia.
D Corresponding author. Email: martin.barbetti@uwa.edu.au
Crop and Pasture Science 68(1) 33-44 https://doi.org/10.1071/CP16098
Submitted: 16 March 2016 Accepted: 10 January 2017 Published: 8 February 2017
Abstract
Subterranean clover (Trifolium subterraneum L.) is an important pasture legume in many regions of Australia, and elsewhere. A survey was undertaken in 2014 to define the levels of soilborne disease and associated pathogens in annual subterranean clover pastures across southern Australia. Most of the 202 samples processed had very severe levels of taproot rot disease (disease index 60–80%) and extremely severe lateral root rot disease (disease index 80–100%). A complex of soilborne root pathogens including Aphanomyces trifolii, Phytophthora clandestina, and one or more of Pythium, Rhizoctonia and Fusarium spp. was found responsible for severe pre- and post-emergence damping-off and root disease. This is the first study to highlight the high incidence of A. trifolii across southern Australian pastures and the first to highlight the existence of natural synergistic associations in the field between Rhizoctonia and Pythium spp., Pythium and Fusarium spp., Pythium spp. and A. trifolii, and P. clandestina and A. trifolii. Nodulation was generally poor, mainly only in the 20–40% nodulation index range. There was no relationship between rainfall zone and tap or lateral root disease level, with root disease equally severe in lower (330 mm) and higher (1000 mm) rainfall zones. This dispels the previous belief that severe root disease in subterranean clover is an issue only in higher rainfall zones. Although overall the relationship between tap and lateral root disease was relatively weak, these two root-disease components were strongly positively expressed within each pathogen’s presence grouping, providing explanation for variability in this relationship across different field situations where soilborne root disease is a major problem. Most producers underestimated the levels and effect of root disease in their pastures. This study established that tap and lateral root diseases are widespread and severe, having devastating impact on the feed gap during autumn–early winter across southern Australia. Severe root disease was independent of the highly variable complex of soilborne pathogens associated with diseased roots, geographic location and rainfall zone. It is evident that soilborne root diseases are the primary factor responsible for widespread decline in subterranean clover productivity of pastures across southern Australia. Implications for disease management and options for extension are discussed.
References
Australian Bureau of Statistics (2012) 7111.0 Principal Agricultural Commodities, Australia, Preliminary, 2012–13. Australian Bureau of Statistics, Canberra, ACT. Available at: www.abs.gov.au/ausstats/abs@.nsf/mf/7111.0 (accessed 5 January 2017).Barbetti MJ (1991) Effects of temperature and humidity on diseases caused by Phoma medicaginis and Leptosphaerulina trifolii in lucerne (Medicago sativa). Plant Pathology 40, 296–301.
| Effects of temperature and humidity on diseases caused by Phoma medicaginis and Leptosphaerulina trifolii in lucerne (Medicago sativa).Crossref | GoogleScholarGoogle Scholar |
Barbetti MJ, Jones RAC (2011) Roles of fungal and nematode infections in casing declining pasture health across Australia. Meat and Livestock Australia, Sydney.
Barbetti MJ, MacNish GC (1978) Root rot of subterranean clover in the irrigation areas of south western Western Australia. Australian Journal of Experimental Agriculture and Animal Husbandry 18, 426–433.
| Root rot of subterranean clover in the irrigation areas of south western Western Australia.Crossref | GoogleScholarGoogle Scholar |
Barbetti MJ, MacNish GC (1983) Root rots of subterranean clover. Journal of Agriculture, Western Australia 1, 9–10.
Barbetti MJ, MacNish G (1984) Effects of cultivation and cultural practice on root rot of subterranean clover. Australian Journal of Experimental Agriculture and Animal Husbandry 24, 550–554.
| Effects of cultivation and cultural practice on root rot of subterranean clover.Crossref | GoogleScholarGoogle Scholar |
Barbetti MJ, Wong DH, Sivasithamparam K, D’Antuono MF (1986a) Response of subterranean clover cultivars to root rot fungi. Annals of Applied Biology 109, 259–267.
| Response of subterranean clover cultivars to root rot fungi.Crossref | GoogleScholarGoogle Scholar |
Barbetti MJ, Sivasithamparam K, Wong D (1986b) Root rot of subterranean clover. Review of Plant Pathology 65, 287–295.
Barbetti MJ, Sivasithamparam K, Wong DH (1987a) Fungicidal seed treatments for control of root rot in subterranean clover. Phytophylactica 19, 57–60.
Barbetti MJ, Sivasithamparam K, Wong DH (1987b) Fungicidal drenches for control of root rot in subterranean clover. Plant and Soil 101, 151–157.
| Fungicidal drenches for control of root rot in subterranean clover.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaL2sXlt1yqtbw%3D&md5=cff8a1eb4205508a41fff69e73860a41CAS |
Barbetti MJ, Jones RAC, Riley IT (1996) Problems and progress in assessing direct and indirect yield losses caused by pathogens in pasture species. In ‘Pasture and forage crop pathology’. (Eds S Chakraborty, KTL Leath, RA Skipp, GA Pederson, RA Bray, GCM Latch, FW Nutter) pp. 63–91. (ASA, CSSA, and SSSA: Madison, WI, USA)
Barbetti MJ, Sivasithamparam K, Riley IT, You MP (2005) Role and impact of diseases caused by soil-borne plant pathogens in reducing productivity in southern Australian pasture systems. Meat and Livestock Australia, Sydney.
Barbetti MJ, You MP, Li H, Ma X, Sivasithamparam K (2007) Management of root diseases of annual pasture legumes in Mediterranean ecosystems—a case study of subterranean clover root diseases in the south-west of Western Australia. Phytopathologia Mediterranea 46, 239–258.
Corbin EJ, Brockwell J, Gault RR (1977) Nodulation studies on chickpea (Cicer aerietinum). Australian Journal of Experimental Agriculture 17, 126–134.
| Nodulation studies on chickpea (Cicer aerietinum).Crossref | GoogleScholarGoogle Scholar |
Gillespie DJ (1983) Developing clovers for disease and insect resistance. Journal of Agriculture, Western Australia 1, 14–15.
Gladstones JS, Collins WJ (1983) Subterranean clover as a naturalized plant in Australia. Journal of the Australian Institute of Agricultural Science 49, 191–202.
Gladstones JS, Collins WJ (1984) Naturalized subterranean clovers of Western Australia. Technical Bulletin No. 64. Western Australian Department of Agriculture, South Perth, W. Aust.
Hill MJ, Donald GE (1998) ‘Australian Temperate Pastures Database.’ (National Pasture Improvement Coordinating Committee/CSIRO Division of Animal Production) (CD-ROM)
Hochman Z, Osborne GJ, Taylor PA, Cullis B (1990) Factors contributing to reduced productivity of subterranean clover pastures on acid soils. Australian Journal of Agricultural Research 41, 669–682.
| Factors contributing to reduced productivity of subterranean clover pastures on acid soils.Crossref | GoogleScholarGoogle Scholar |
Hosseini S, Heyman F, Olsson U, Broberg A, Funck Jensen D, Karlsson M (2014) Zoospore chemotaxis of closely related legume-root infecting Phytophthora species towards host isoflavones. Plant Pathology 63, 708–714.
| Zoospore chemotaxis of closely related legume-root infecting Phytophthora species towards host isoflavones.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC2cXmt1WnurY%3D&md5=c7d096027c706e1c0b71a5e4a425f019CAS |
Johnstone GR, Barbetti MJ (1987) Impact of fungal and viral diseases on pasture. In ‘Temperate pastures, their production, use and management’. (Eds JL Wheeler, CJ Pearson, GE Robards) pp. 235–248. (CSIRO: Melbourne)
Jones HR, Curnow BC (1986) Nodulation of subterranean clover growing in permanent pastures on acid soils in North-Central Victoria. Australian Journal of Experimental Agriculture 26, 31–36.
| Nodulation of subterranean clover growing in permanent pastures on acid soils in North-Central Victoria.Crossref | GoogleScholarGoogle Scholar |
McKinney HH (1923) A new system of grading plant diseases. Journal of Agricultural Research 26, 195–218.
Nichols PGH, Collins WJ, Barbetti MJ (1996) Registered cultivars of subterranean clover—their characteristics, origin and identification. Bulletin No. 4327. Agriculture Western Australia, South Perth, W. Aust.
Nichols PGH, Jones RAC, Barbetti MJ (2014) Genetic improvement of subterranean clover (Trifolium subterraneum L.). 2. Breeding for disease and pest resistance. Crop & Pasture Science 65, 1207–1229.
| Genetic improvement of subterranean clover (Trifolium subterraneum L.). 2. Breeding for disease and pest resistance.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC2cXhvVOnsrvP&md5=01b16b14c4b7313c55dc99677da94dc2CAS |
O’Rourke TA, Scanlon TT, Ryan MH, Wade LJ, McKay AC, Riley I, Li H, Sivasithamparam K, Barbetti MJ (2009) Severity of root rot in mature subterranean clover and associated fungal pathogens in the wheatbelt of Western Australia. Crop & Pasture Science 60, 43–50.
| Severity of root rot in mature subterranean clover and associated fungal pathogens in the wheatbelt of Western Australia.Crossref | GoogleScholarGoogle Scholar |
O’Rourke TA, Scanlon TT, Ryan MH, Sivasithamparam K, Barbetti MJ (2012) Amelioration of root disease of subterranean clover (Trifolium subterraneum) by mineral nutrients. Crop & Pasture Science 63, 672–682.
| Amelioration of root disease of subterranean clover (Trifolium subterraneum) by mineral nutrients.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XhsFahu7nI&md5=84282a5a0b97f41f8cb64740378153b3CAS |
Ophel-Keller K, McKay A, Hartley D, Herdina , Curran J (2008) Development of a routine DNA-based testing service for soilborne diseases in Australia. Australasian Plant Pathology 37, 243–253.
| Development of a routine DNA-based testing service for soilborne diseases in Australia.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1cXktVChtro%3D&md5=68d7082ea40f6560d6a2c5a664269a33CAS |
Roughley RJ, Dart PJ, Nutman PS, Clarke PA (1970) The infection of Trifolium subterraneum root hairs by Rhizobium trifolii. Journal of Experimental Botany 21, 186–194.
| The infection of Trifolium subterraneum root hairs by Rhizobium trifolii.Crossref | GoogleScholarGoogle Scholar |
Simpson RJ, Richardson AE, Rile IT, McKay AC, McKay SF, Ballard RA, Ophel-Keller K, Hartley D, O’Rourke TA, Sivasithamparam K, Li H, Ryan MH, Barbetti MJ (2011) Damage to roots of Trifolium subterraneum L., failure of seedlings to establish and the presence of root pathogens during autumn–winter. Grass and Forage Science 66, 585–605.
| Damage to roots of Trifolium subterraneum L., failure of seedlings to establish and the presence of root pathogens during autumn–winter.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3MXhs1emtbbK&md5=34ce1b7a11500af3302999c7ad20dd44CAS |
Smiley R, Tayor PA, Clarke RG, Greenhalgh FC, Trutmann P (1986) Simulated soil and plant management effects on root rots of subterranean clover. Australian Journal of Agricultural Research 37, 633–645.
| Simulated soil and plant management effects on root rots of subterranean clover.Crossref | GoogleScholarGoogle Scholar |
Wong DH, Barbetti MJ, Sivasithamparam K (1984) Effects of soil temperature and moisture on the pathogenicity of fungi associated with root rot of subterranean clover. Australian Journal of Agricultural Research 35, 675–684.
| Effects of soil temperature and moisture on the pathogenicity of fungi associated with root rot of subterranean clover.Crossref | GoogleScholarGoogle Scholar |
Wong DH, Barbetti MJ, Sivasithamparam K (1985) Fungi associated with root rots of subterranean clover in Western Australia. Australian Journal of Experimental Agriculture 25, 574–579.
| Fungi associated with root rots of subterranean clover in Western Australia.Crossref | GoogleScholarGoogle Scholar |
Wong DH, Sivasithamparam K, Barbetti MJ (1986) Influence of soil temperature, moisture and other fungal root pathogens on the pathogenicity of Phytophthora clandestina to subterranean clover. Transactions of the British Mycological Society 86, 479–482.
| Influence of soil temperature, moisture and other fungal root pathogens on the pathogenicity of Phytophthora clandestina to subterranean clover.Crossref | GoogleScholarGoogle Scholar |
You MP, Barbetti MJ, Sivasithamparam K (2005) Characterization of Phytophthora clandestina races on Trifolium subterraneum in Western Australia. European Journal of Plant Pathology 113, 267–274.
| Characterization of Phytophthora clandestina races on Trifolium subterraneum in Western Australia.Crossref | GoogleScholarGoogle Scholar |
You MP, Barbetti MJ, Sivasithamparam K (2006) Occurrence of Phytophthora clandestina races across rainfall zones in south west Western Australia. Australasian Plant Pathology 35, 85–87.
| Occurrence of Phytophthora clandestina races across rainfall zones in south west Western Australia.Crossref | GoogleScholarGoogle Scholar |
You MP, O’Rourke TA, Foster K, Snowball R, Barbetti MJ (2016) Host resistances to Aphanomyces trifolii root rot of subterranean clover: first opportunity to successfully manage this severe pasture disease. Plant Pathology 65, 901–913.
| Host resistances to Aphanomyces trifolii root rot of subterranean clover: first opportunity to successfully manage this severe pasture disease.Crossref | GoogleScholarGoogle Scholar |