QTLs for ascochyta blight resistance in faba bean (Vicia faba L.): validation in field and controlled conditions
S. G. Atienza A , C. Palomino B , N. Gutiérrez B , C. M. Alfaro B , D. Rubiales A , A. M. Torres B and C. M. Ávila B CA Instituto de Agricultura Sostenible-CSIC, Alameda del Obispo s/n, 14004, Córdoba, Spain.
B Área Mejora y Biotecnología, IFAPA-Centro Alameda del Obispo, Apdo. 3092, 14080, Córdoba, Spain.
C Corresponding author. Email: carmenm.avila@juntadeandalucia.es
Crop and Pasture Science 67(2) 216-224 https://doi.org/10.1071/CP15227
Submitted: 8 July 2015 Accepted: 6 October 2015 Published: 19 February 2016
Abstract
Ascochyta blight is an important disease of faba bean (Vicia faba L.). Yield losses can be as high as 90% and losses of 35–40% are common. The line 29H is one of the most resistant accessions to the pathogen (Ascochyta fabae Speg.) ever described. In this work, we aimed to validate across generations the main quantitative trait loci (QTLs) for ascochyta blight resistance identified in the cross 29H × Vf136 and to test their stability under field conditions. QTLs located on chromosomes II and III have been consistently identified in the recombinant inbred line (RIL) population of this cross, in both controlled (growth chamber) and field conditions and, thus they are good targets for breeding. In addition, a new QTL for disease severity on pods has been located on chromosome VI, but in this case, further validation is still required.
A synteny-based approach was used to compare our results with previous QTL works dealing with this pathogen. Our results suggest that the QTL located on chromosome II, named Af2, is the same one reported by other researchers, although it is likely that the donors of resistance differ in the allele conferring the resistance. By contrast, the location of Af3 on chromosome III does not overlap with the position of Af1 reported by other authors, suggesting that Af3 may be an additional source of resistance to ascochyta blight.
Additional keywords: Faba bean, Vicia faba, Ascochyta fabae, QTL analysis.
References
Angus JF, Kirkegaard JA, Hunt JR, Ryan MH, Ohlander L, Peoples MB (2015) Break crops and rotations for wheat. Crop & Pasture Science 66, 523–552.| Break crops and rotations for wheat.Crossref | GoogleScholarGoogle Scholar |
Atienza SG, Avila CM, Martin A (2007) The development of a PCR-based marker for Psy1 from Hordeum chilense, a candidate gene for carotenoid content accumulation in tritordeum seeds. Australian Journal of Agricultural Research 58, 767–773.
| The development of a PCR-based marker for Psy1 from Hordeum chilense, a candidate gene for carotenoid content accumulation in tritordeum seeds.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2sXhtVSgt7vM&md5=0b8fd94ba78db27c19a8cee249fa11e3CAS |
Avila CM, Satovic Z, Sillero JC, Rubiales D, Moreno MT, Torres AM (2004) Isolate and organ-specific QTLs for ascochyta blight resistance in faba bean (Vicia faba L). Theoretical and Applied Genetics 108, 1071–1078.
| Isolate and organ-specific QTLs for ascochyta blight resistance in faba bean (Vicia faba L).Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2cXivV2jsrg%3D&md5=f3edf89d5609d469afd7aa16107f4ae0CAS | 15067393PubMed |
Avila CM, Nadal S, Moreno MT, Torres AM (2006) Development of a simple PCR-based marker for the determination of growth habit in Vicia faba L. using a candidate gene approach. Molecular Breeding 17, 185–190.
| Development of a simple PCR-based marker for the determination of growth habit in Vicia faba L. using a candidate gene approach.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD28XjslKjurc%3D&md5=d58f3927fd7b2a3fe5993c373a380b3fCAS |
Avila CM, Atienza SG, Moreno MT, Torres AM (2007) Development of a new diagnostic marker for growth habit selection in faba bean (Vicia faba L.) breeding. Theoretical and Applied Genetics 115, 1075–1082.
| Development of a new diagnostic marker for growth habit selection in faba bean (Vicia faba L.) breeding.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2sXht1aqt7nN&md5=85bd911ee3623a12432c6d58c66c87f5CAS | 17828523PubMed |
Bond DA, Pope M (1980) Ascochyta fabae on winter beans (Vicia faba): pathogen spread and variation in host resistance. Plant Pathology 29, 59–65.
| Ascochyta fabae on winter beans (Vicia faba): pathogen spread and variation in host resistance.Crossref | GoogleScholarGoogle Scholar |
Bond DA, Jellis GJ, Rowland GG, Le Guen J, Robertson LD, Khalil SA, Li-Juan L (1994) Present status and future strategy in breeding faba beans (Vicia faba L.) for resistance to biotic and abiotic stresses. Euphytica 73, 151–166.
| Present status and future strategy in breeding faba beans (Vicia faba L.) for resistance to biotic and abiotic stresses.Crossref | GoogleScholarGoogle Scholar |
Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138, 963–971.
Conneally PM, Edwards JH, Kidd KK, Lalouel J-M, Morton NE, Ott J, White R (1985) Report of the committee on methods of linkage analysis and reporting. Cytogenetics and Cell Genetics 40, 356–359.
| Report of the committee on methods of linkage analysis and reporting.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DyaL28%2FlsV2rtQ%3D%3D&md5=bfda0e4c804d37ba274cf80590a0df10CAS | 3864600PubMed |
Cruz-Izquierdo S, Avila CM, Satovic Z, Palomino C, Gutierrez N, Ellwood SR, Phan HTT, Cubero JI, Torres AM (2012) Comparative genomics to bridge Vicia faba with model and closely-related legume species: stability of QTLs for flowering and yield-related traits. Theoretical and Applied Genetics 125, 1767–1782.
| Comparative genomics to bridge Vicia faba with model and closely-related legume species: stability of QTLs for flowering and yield-related traits.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DC%2BC38flsFyjtQ%3D%3D&md5=6bf807407e741af8c260f7f6705f5750CAS | 22864387PubMed |
Cubero JI, Moreno MT, Hernández L (1992) A faba bean cultivar resistant to Orobanche crenata Forsk. In ‘Proceedings 1st European Conference on Grain Legumes’. Anges, France. pp. 41–42. (AEP, European Association for Grain Legume Research)
Díaz-Ruiz R, Satovic Z, Ávila CM, Alfaro CM, Gutierrez MV, Torres AM, Román B (2009) Confirmation of QTLs controlling Ascochyta fabae resistance in different generations of faba bean (Vicia faba L.). Crop & Pasture Science 60, 353–361.
| Confirmation of QTLs controlling Ascochyta fabae resistance in different generations of faba bean (Vicia faba L.).Crossref | GoogleScholarGoogle Scholar |
El-Rodeny W, Kimura M, Hirakawa H, Sabah A, Shirasawa K, Sato S, Tabata S, Sasamoto S, Watanabe A, Kawashima K, Kato M, Wada T, Tsuruoka H, Takahashi C, Minami C, Nanri K, Nakayama S, Kohara M, Yamada M, Kishida Y, Fujishiro T, Isobe S (2014) Development of EST-SSR markers and construction of a linkage map in faba bean (Vicia faba). Breeding Science 64, 252–263.
| Development of EST-SSR markers and construction of a linkage map in faba bean (Vicia faba).Crossref | GoogleScholarGoogle Scholar | 25320560PubMed |
Ellwood SR, Phan HTT, Jordan M, Hane J, Torres AM, Avila CM, Cruz-Izquierdo S, Oliver RP (2008) Construction of a comparative genetic map in faba bean (Vicia faba L.); conservation of genome structure with Lens culinaris. BMC Genomics 9, 380
| Construction of a comparative genetic map in faba bean (Vicia faba L.); conservation of genome structure with Lens culinaris.Crossref | GoogleScholarGoogle Scholar | 18691425PubMed |
FAOSTAT (2013) Download data—crops. Food and Agriculture Organization of the United Nations, Statistics division. Available at: http://faostat3.fao.org/download/Q/QC/E.
Gutiérrez N, Palomino C, Satovic Z, Ruiz-Rodríguez MD, Vitale S, Gutiérrez MV, Rubiales D, Kharrat M, Amri M, Emeran AA, Cubero JI, Atienza SG, Torres AM, Avila CM (2013) QTLs for Orobanche spp. resistance in faba bean: identification and validation across different environments. Molecular Breeding 32, 909–922.
| QTLs for Orobanche spp. resistance in faba bean: identification and validation across different environments.Crossref | GoogleScholarGoogle Scholar |
Han Y, Li D, Zhu D, Li H, Li X, Teng W, Li W (2012) QTL analysis of soybean seed weight across multi-genetic backgrounds and environments. Theoretical and Applied Genetics 125, 671–683.
| QTL analysis of soybean seed weight across multi-genetic backgrounds and environments.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XhtFWhsLfK&md5=fd375693b1ccce762503981ed04998daCAS | 22481120PubMed |
Hanounik SB, Robertson LD (1989) Resistance in Vicia faba germ plasm to blight caused by Ascochyta fabae. Plant Disease 73, 202–205.
| Resistance in Vicia faba germ plasm to blight caused by Ascochyta fabae.Crossref | GoogleScholarGoogle Scholar |
Jansen RC (1993) Interval mapping of multiple quantitative trait loci. Genetics 135, 205–211.
Jansen RC (1994) Controlling the type I and type II errors in mapping quantitative trait loci. Genetics 138, 871–881.
Jansen RC, Stam P (1994) High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136, 1447–1455.
Kaur S, Kimber RBE, Cogan NOI, Materne M, Forster JW, Paull JG (2014) SNP discovery and high-density genetic mapping in faba bean (Vicia faba L.) permits identification of QTLs for ascochyta blight resistance. Plant Science 217–218, 47–55.
| SNP discovery and high-density genetic mapping in faba bean (Vicia faba L.) permits identification of QTLs for ascochyta blight resistance.Crossref | GoogleScholarGoogle Scholar | 24467895PubMed |
Khazaei H, O’Sullivan D, Sillanpää M, Stoddard F (2014) Use of synteny to identify candidate genes underlying QTL controlling stomatal traits in faba bean (Vicia faba L.). Theoretical and Applied Genetics 127, 2371–2385.
| Use of synteny to identify candidate genes underlying QTL controlling stomatal traits in faba bean (Vicia faba L.).Crossref | GoogleScholarGoogle Scholar | 25186169PubMed |
Kohpina S, Knight R, Stoddard FL (2000) Genetics of resistance to ascochyta blight in two populations of faba bean. Euphytica 112, 101–107.
| Genetics of resistance to ascochyta blight in two populations of faba bean.Crossref | GoogleScholarGoogle Scholar |
Kramer CC, Polewicz H, Osborn TC (2009) Evaluation of QTL alleles from exotic sources for hybrid seed yield in the original and different genetic backgrounds of spring-type Brassica napus L. Molecular Breeding 24, 419–431.
| Evaluation of QTL alleles from exotic sources for hybrid seed yield in the original and different genetic backgrounds of spring-type Brassica napus L.Crossref | GoogleScholarGoogle Scholar |
Lander ES, Botstein D (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121, 185–199.
Maurin N, Tivoli B (1992) Variation in the resistance of Vicia faba to Ascochyta fabae in relation to disease development in field trials. Plant Pathology 41, 737–744.
| Variation in the resistance of Vicia faba to Ascochyta fabae in relation to disease development in field trials.Crossref | GoogleScholarGoogle Scholar |
Maurin N, Gourret JP, Tivoli B (1993) Histopathology of the interaction between Ascochyta fabae and Vicia faba: comparison of susceptible and resistant reactions. Agronomie 13, 921–927.
| Histopathology of the interaction between Ascochyta fabae and Vicia faba: comparison of susceptible and resistant reactions.Crossref | GoogleScholarGoogle Scholar |
Ocaña S, Seoane P, Bautista R, Palomino C, Claros GM, Torres AM, Madrid E (2015) Large-scale transcriptome analysis in faba bean (Vicia faba L.) under Ascochyta fabae infection. PLoS One 10, e0135143
| Large-scale transcriptome analysis in faba bean (Vicia faba L.) under Ascochyta fabae infection.Crossref | GoogleScholarGoogle Scholar | 26267359PubMed |
Pottorff M, Roberts PA, Close TJ, Lonardi S, Wanamaker S, Ehlers JD (2014) Identification of candidate genes and molecular markers for heat-induced brown discoloration of seed coats in cowpea [Vigna unguiculata (L.) Walp.]. BMC Genomics 15, 328
| Identification of candidate genes and molecular markers for heat-induced brown discoloration of seed coats in cowpea [Vigna unguiculata (L.) Walp.].Crossref | GoogleScholarGoogle Scholar | 24885083PubMed |
Rashid K, Bernier CC, Conner RL (1991) Evaluation of fava bean for resistance to Ascochyta fabae and development of host differentials for race identification. Plant Disease 75, 852–855.
| Evaluation of fava bean for resistance to Ascochyta fabae and development of host differentials for race identification.Crossref | GoogleScholarGoogle Scholar |
Rodríguez-Suárez C, Atienza SG (2012) Hordeum chilense genome, a useful tool to investigate the endosperm yellow pigment content in the Triticeae. BMC Plant Biology 12, 200
| Hordeum chilense genome, a useful tool to investigate the endosperm yellow pigment content in the Triticeae.Crossref | GoogleScholarGoogle Scholar | 23122232PubMed |
Román B, Satovic Z, Avila CM, Rubiales D, Moreno MT, Torres AM (2003) Locating genes associated with Ascochyta fabae resistance in Vicia faba. Australian Journal of Agricultural Research 54, 85–90.
| Locating genes associated with Ascochyta fabae resistance in Vicia faba.Crossref | GoogleScholarGoogle Scholar |
Rubiales D, Fondevilla S (2012) Future prospects for ascochyta blight resistance breeding in cool season food legumes. Frontiers in Plant Science 3, 27
| Future prospects for ascochyta blight resistance breeding in cool season food legumes.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DC%2BC38nnt12ktQ%3D%3D&md5=6945efe79c24404888a7c184ddfa1023CAS | 22645577PubMed |
Rubiales D, Avila CM, Sillero JC, Hybl M, Narits L, Sass O, Flores F (2012) Identification and multi-environment validation of resistance to Ascochyta fabae in faba bean (Vicia faba). Field Crops Research 126, 165–170.
| Identification and multi-environment validation of resistance to Ascochyta fabae in faba bean (Vicia faba).Crossref | GoogleScholarGoogle Scholar |
Satovic Z, Avila C, Cruz-Izquierdo S, Diaz-Ruiz R, Garcia-Ruiz G, Palomino C, Gutierrez N, Vitale S, Ocana-Moral S, Gutierrez M, Cubero J, Torres A (2013) A reference consensus genetic map for molecular markers and economically important traits in faba bean (Vicia faba L.). BMC Genomics 14, 932
| A reference consensus genetic map for molecular markers and economically important traits in faba bean (Vicia faba L.).Crossref | GoogleScholarGoogle Scholar | 24377374PubMed |
Siddique KHM, Erskine W, Hobson K, Knights EJ, Leonforte A, Khan TN, Paull JG, Redden R, Materne M (2013) Cool-season grain legume improvement in Australia—use of genetic resources. Crop & Pasture Science 64, 347–360.
| Cool-season grain legume improvement in Australia—use of genetic resources.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3sXht12jt7bM&md5=baf27c97303301123f25a8c821ef8878CAS |
Sillero JC, Avila CM, Moreno MT, Rubiales D (2001) Identification of resistance to Ascochyta fabae in Vicia faba germplasm. Plant Breeding 120, 529–531.
| Identification of resistance to Ascochyta fabae in Vicia faba germplasm.Crossref | GoogleScholarGoogle Scholar |
Sillero JC, Villegas-Fernández AM, Thomas J, Rojas-Molina MM, Emeran AA, Fernández-Aparicio M, Rubiales D (2010) Faba bean breeding for disease resistance. Field Crops Research 115, 297–307.
| Faba bean breeding for disease resistance.Crossref | GoogleScholarGoogle Scholar |
Stoddard FL, Nicholas AH, Rubiales D, Thomas J, Villegas-Fernández AM (2010) Integrated pest management in faba bean. Field Crops Research 115, 308–318.
| Integrated pest management in faba bean.Crossref | GoogleScholarGoogle Scholar |
Tang H, Krishnakumar V, Bidwell S, Rosen B, Chan A, Zhou S, Gentzbittel L, Childs K, Yandell M, Gundlach H, Mayer K, Schwartz D, Town C (2014) An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics 15, 312
| An improved genome release (version Mt4.0) for the model legume Medicago truncatula.Crossref | GoogleScholarGoogle Scholar | 24767513PubMed |
Tanksley SD, Hewitt J (1988) Use of molecular markers in breeding for soluble solids content in tomato — a re-examination. Theoretical and Applied Genetics 75, 811–823.
| Use of molecular markers in breeding for soluble solids content in tomato — a re-examination.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaL1cXkvV2ru7g%3D&md5=d3a2f3f0e19c36363ce40a516a68a233CAS |
Tivoli B, Reynauld B, Maurin N, Berthelem P, Le Guen J (1987) Comparison of some methods for evaluation of reaction of different faba bean genotypes to Ascochyta fabae. FABIS Newsletter 17, 35–38.
Tivoli B, Baranger A, Avila CM, Banniza S, Barbetti M, Chen W, Davidson J, Lindeck K, Kharrat M, Rubiales D, Sadiki M, Sillero JC, Sweetingham M, Muehlbauer FJ (2006) Screening techniques and sources of resistance to foliar diseases caused by major necrotrophic fungi in grain legumes. Euphytica 147, 223–253.
| Screening techniques and sources of resistance to foliar diseases caused by major necrotrophic fungi in grain legumes.Crossref | GoogleScholarGoogle Scholar |
van Ooijen JW (1992) Accuracy of mapping quantitative trait loci in autogamous species. Theoretical and Applied Genetics 84, 803–811.
| Accuracy of mapping quantitative trait loci in autogamous species.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK3sXnsVCgtg%3D%3D&md5=05b584c81a240829a6fa0032443f135cCAS | 24201478PubMed |
van Ooijen JW, Boer MP, Jansen RC, Maliepaard C (2000) ‘MapQTL™ version 4.0: Software for the calculation of QTL positions on genetic maps.’ (Plant Research International: Wageningen, The Netherlands)
Voorrips RE (2002) MapChart: Software for the graphical presentation of linkage maps and QTLs. The Journal of Heredity 93, 77–78.
| MapChart: Software for the graphical presentation of linkage maps and QTLs.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD38XktlOntrw%3D&md5=ffd40406741e95a8b496eab745d52d49CAS | 12011185PubMed |
Webb A, Cottage A, Wood T, Khamassi K, Hobbs D, Gostkiewicz K, White M, Khazaei H, Ali M, Street D, Duc G, Stoddard FL, Maalouf F, Ogbonnaya FC, Link W, Thomas J, O’Sullivan DM (2015) A SNP-based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.). Plant Biotechnology Journal
| A SNP-based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.).Crossref | GoogleScholarGoogle Scholar | 25865502PubMed |