Free Standard AU & NZ Shipping For All Book Orders Over $80!
Register      Login
Australian Journal of Botany Australian Journal of Botany Society
Southern hemisphere botanical ecosystems
RESEARCH ARTICLE

Genetic diversity within a population of Microlaena stipoides, as revealed by AFLP markers

M. L. Mitchell A D E , B. J. Stodart B and J. M. Virgona C
+ Author Affiliations
- Author Affiliations

A Agriculture Research, Department of Environment and Primary Industries, 124 Chiltern Valley Road, Rutherglen, Vic 3685, Australia.

B School of Agricultural and Wine Sciences, Charles Sturt University, Locked Bag 588, Wagga Wagga, NSW 2678, Australia.

C Graminus Consulting P/L, 1 Heron Place, Wagga Wagga, NSW 2678, Australia.

D Future Farm Industries CRC, The University of Western Australia M081, 35 Stirling Highway, Crawley WA 6009, Australia.

E Corresponding author. Email: meredith.mitchell@depi.vic.gov.au

Australian Journal of Botany 62(7) 580-586 https://doi.org/10.1071/BT14182
Submitted: 5 August 2014  Accepted: 28 October 2014   Published: 19 February 2015

Abstract

Microlaena stipoides (Labill.) R.Br. (microlaena), a C3 perennial grass, is common within grazed native pastures in the high-rainfall zone (>550 mm average annual rainfall) of south-eastern Australia. It has the ability to spread via seed production or vegetatively, using both rhizomes and stolons. This experiment aimed to determine how variable a microlaena population was within a single area, with the aim of determining whether microlaena relied on seed or vegetative spread to sustain populations. Leaf samples of microlaena were collected from 85 locations, sampling two transects, within a pasture at Chiltern, in north-eastern Victoria (36°12ʹS, 146°35ʹE). The genetic diversity among samples was analysed using amplified fragment length polymorphism (AFLP) markers. We obtained 1612 fragments, using 10 primers combinations. Polymorphism for the markers ranged from 47% to 65%. These results indicated that the populations of microlaena that exist within the pasture at Chiltern are likely to have undergone some degree of outcrossing (Fst = 0.0219). It is likely that recruitment is occurring from sexual reproduction as well as via clonal spread within the microlaena population examined. This ability to use vegetative spread as well as both sexual and asexual reproduction may make populations of microlaena more resilient in the longer term.

Additional keywords: DNA, leaf samples, native grass, pasture, Poaceae, variation, weeping grass.


References

Ashley, RWP (1974) ‘History of the Shire of Chiltern.’ (Thomson’s Printing: Albury–Wodonga: NSW)

Beadle NCW (1981) ‘The vegetation of Australia.’ (Cambridge University Press.: Cambridge, UK)

Bryan G (2006) Molecular analysis of plant genetic resources. In ‘Plant conservation genetics’. (Ed. RJ Henry) pp. 131–148. (Food Products Press: New York)

Clifford HT (1962) Cleistogamy in Microlaena stipoides (Labill.) R.Br. University of Queensland Papers. 4, 63–72.

Cortese LM, Honig J, Miller C, Bonos SA (2010) Genetic diversity of twelve switchgrass populations using molecular and morphological markers. BioEnergy Research 3, 262–271.
Genetic diversity of twelve switchgrass populations using molecular and morphological markers.Crossref | GoogleScholarGoogle Scholar |

Davies CL, Waugh DL, Lefroy EC (2005) Variation in seed yield and its components in the Australian native grass Microlaena stipoides as a guide to its potential as a perennial grain crop. Australian Journal of Agricultural Research 56, 309–316.
Variation in seed yield and its components in the Australian native grass Microlaena stipoides as a guide to its potential as a perennial grain crop.Crossref | GoogleScholarGoogle Scholar |

Edgar E, Connor HE (1998) Zotovia and Microlaena: New Zealand ehrhartoid Gramineae. New Zealand Journal of Botany 36, 565–586.
Zotovia and Microlaena: New Zealand ehrhartoid Gramineae.Crossref | GoogleScholarGoogle Scholar |

Fitzgerald TL, Shapter FM, McDonald S, Waters DLE, Chivers IH, Drenth A, Nevo E, Henry RJ (2010) Genome diversity in wild grasses under environmental stress. Proceedings of the National Academy of Sciences, USA 108, 21139–21144.

Fu YB, Phan AT, Coulman B, Richards KW (2004) Genetic diversity in natural populations and corresponding seed collections of little bluestem as revealed by AFLP markers. Crop Science 44, 2254–2260.
Genetic diversity in natural populations and corresponding seed collections of little bluestem as revealed by AFLP markers.Crossref | GoogleScholarGoogle Scholar |

Fu YB, Thompson D, Willms W, Mackay M (2005) Long-term grazing effects on genetic variability in mountain rough fescue. Rangeland Ecology and Management 58, 637–642.
Long-term grazing effects on genetic variability in mountain rough fescue.Crossref | GoogleScholarGoogle Scholar |

Groves RH, Whalley RDB (2002) Grass and grassland ecology in Australia. Flora of Australia. 43, 157–182.

Guidet F, Rogowsky P, Taylor C, Song W, Langridge P (1991) Cloning and characterisation of a new rye-specific repeated sequence. Genome 34, 81–87.
Cloning and characterisation of a new rye-specific repeated sequence.Crossref | GoogleScholarGoogle Scholar |

Hammer Ø, Harper D, Ryan P (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontologia Electronica 4, 9–18.

Harper JL (1977) ‘Population biology of plants.’ (Academic Press: London)

Hayashi E, Chi HC, Boyer SK, Still DW (2005) ‘Amplified fragment length polymorphism protocol for plant science on CEQ series genetic analysis system.’ (Beckman Coulter: Fullerton, CA)

Heywood JS (1991) Spatial analysis of genetic variation in plant populations. Annual Review of Ecology and Systematics 22, 335–355.
Spatial analysis of genetic variation in plant populations.Crossref | GoogleScholarGoogle Scholar |

Hodkinson TR, Chase MW, Renvoize SA (2002) Characterization of a genetic resource collection for Miscanthus (Saccharinae, Andropogoneae, Poaceae) using AFLP and ISSR PCR. Annals of Botany 89, 627–636.
Characterization of a genetic resource collection for Miscanthus (Saccharinae, Andropogoneae, Poaceae) using AFLP and ISSR PCR.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD38XkvVGktrw%3D&md5=8922ccb6af6bf9de7b173ff4e4aefa37CAS | 12099538PubMed |

Hol WHG, van der Wurff AWG, Skøt L, Cook R (2008) Two distinct AFLP types in three populations of marram grass (Ammophila arenaria) in Wales. Plant Genetic Resources; Characterization and Utilization 6, 201–207.
Two distinct AFLP types in three populations of marram grass (Ammophila arenaria) in Wales.Crossref | GoogleScholarGoogle Scholar |

Isbell RF (1996) ‘The Australian soil classification.’ (CSIRO Publishing: Melbourne)

Jacobs SWL, Whalley RDB, Wheeler DJB (2008) ‘Grasses of New South Wales.’ (University of New England: Armidale, NSW)

Koopman WJM (2005) Phylogenetic signal in AFLP data sets. Systematic Biology 54, 197–217.
Phylogenetic signal in AFLP data sets.Crossref | GoogleScholarGoogle Scholar |

Li M, Gong L, Tian Q, Hu L, Guo W, Kimatu JN, Wang D, Liu B (2009) Clonal genetic diversity and populational genetic differentiation in Phragmites australis distributed in the Songnen prairie in northeast China as revealed by amplified fragment length polymorphism and sequence-specific amplification polymorphism molecular markers. Annals of Applied Biology 154, 43–55.
Clonal genetic diversity and populational genetic differentiation in Phragmites australis distributed in the Songnen prairie in northeast China as revealed by amplified fragment length polymorphism and sequence-specific amplification polymorphism molecular markers.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXivVGku74%3D&md5=030197979f1afb20d78442b139d12990CAS |

Lindsay EA, Cunningham SA (2011) Native grass establishment in grassy woodlands with nutrient enriched soil and exotic grass invasion. Restoration Ecology 19, 131–140.
Native grass establishment in grassy woodlands with nutrient enriched soil and exotic grass invasion.Crossref | GoogleScholarGoogle Scholar |

Lynch M, Milligan BG (1994) Analysis of population genetic structure with RAPD markers. Molecular Ecology 3, 91–99.
Analysis of population genetic structure with RAPD markers.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DyaK2c3ptVKltw%3D%3D&md5=910e6628b17f1c5af0c55aeecb523cd7CAS | 8019690PubMed |

Magcale-Macandog DB, Whalley RDB (2000) Genotypic differentiation in Microlaena stipoides populations: morphological and ecological patterns. The Philippine Agricultural Scientist 83, 159–172.

Mengistu LW, Mueller-Warrant GW, Barker RE (2000) Genetic diversity of Poa annua in western Oregon grass seed crops. Theoretical and Applied Genetics 101, 70–79.
Genetic diversity of Poa annua in western Oregon grass seed crops.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXlvVyks70%3D&md5=da7644ff375c37738c3738fc09c17d32CAS |

Meudt HM, Clarke AC (2007) Almost forgotten or latest practice? AFLP applications, analyses and advances. Trends in Plant Science 12, 106–117.
Almost forgotten or latest practice? AFLP applications, analyses and advances.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2sXivVShsbY%3D&md5=e29cf12bfc678945bbf18565f5abfcc8CAS | 17303467PubMed |

Mitchell M, Virgona J, Jacobs J, Kemp D (2013) A description of the plant structures of Microlaena, a grass species forming stolons and rhizomes. In ‘Proceedings of the 54th annual conference of the Grassland Society of Southern Australia, Albury, NSW’. (Ed J Hirth) pp. 124–128. (Grassland Society of Southern Australia Inc.: Melbourne)

Mitchell ML, Virgona JM, Jacobs JL, Kemp DR (2014) Population biology of Microlaena stipoides in a south-eastern Australian pasture. Crop and Pasture Science 65, 767–779.
Population biology of Microlaena stipoides in a south-eastern Australian pasture.Crossref | GoogleScholarGoogle Scholar |

Moncada K, Ehlke NJ, Muehlbauer G, Sheaffer C, Wyse D (2005) ‘Assessment of AFLP-based genetic variation in three native plant species across the State of Minnesota.’ (Minnesota Department of Transportation: St Paul, MN). Available at http://www.lrrb.org/pdf/200546.pdf. [Accessed 12 April 2012]

Munsell (1968) ‘Munsell Plant Tissue Color Charts.’ (Munsell Color Co: Baltimore, MD, USA)

Murray BG, De Lange PJ, Ferguson AR (2005) Nuclear DNA variation, chromosome numbers and polyploidy in the endemic and indigenous grass flora of New Zealand. Annals of Botany 96, 1293–1305.
Nuclear DNA variation, chromosome numbers and polyploidy in the endemic and indigenous grass flora of New Zealand.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD28XmsFOqtg%3D%3D&md5=0b6a240c103d2d81b5eaf86150224726CAS | 16243852PubMed |

Nock CJ, Waters DLE, Edwards MA, Bowen SG, Rice N, Cordeiro GM, Henry RJ (2011) Chloroplast genome sequences from total DNA for plant identification. Plant Biotechnology Journal 9, 328–333.
Chloroplast genome sequences from total DNA for plant identification.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3MXptVyitrk%3D&md5=cc2222802777297f816b58c2fd7df58eCAS | 20796245PubMed |

Payne RW, Murray DA, Harding SA, Baird DB, Soutar DM (2010) ‘Genstat for Windows.’ 13th edn. (VSN International: Hemel Hempstead, UK)

Peakall ROD, Smouse PE (2006) GenAIEx 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6, 288–295.
GenAIEx 6: genetic analysis in Excel. Population genetic software for teaching and research.Crossref | GoogleScholarGoogle Scholar |

Renvoize S (2002) Grass anatomy. Flora of Australia 43, 71–132.

Shapter FM, Cross M, Ablett G, Malory S, Chivers IH, King GJ, Henry RJ (2013) High-throughput sequencing and mutagenesis to accelerate the domestication of Microlaena stipoides as a new food crop. PLoS ONE 8, e82641
High-throughput sequencing and mutagenesis to accelerate the domestication of Microlaena stipoides as a new food crop.Crossref | GoogleScholarGoogle Scholar | 24367532PubMed |

Sharp D, Simon BK (2002) ‘AusGrass: grasses of Australia.’ (CSIRO Publishing / Australian Biological Resources Study (ABRS): Melbourne)

Simpson P, Langford C (1996) Whole-farm management of grazing systems based on native and introduced species. New Zealand Journal of Agricultural Research 39, 601–609.
Whole-farm management of grazing systems based on native and introduced species.Crossref | GoogleScholarGoogle Scholar |

Subudhi PK, Parami NP, Harrison SA, Materne MD, Murphy JP, Nash D (2005) An AFLP-based survey of genetic diversity among accessions of sea oats (Uniola paniculata, Poaceae) from the southeastern Atlantic and Gulf coast states of the United States. TAG Theoretical and Applied Genetics 111, 1632–1641.
An AFLP-based survey of genetic diversity among accessions of sea oats (Uniola paniculata, Poaceae) from the southeastern Atlantic and Gulf coast states of the United States.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2MXht1SqtLjJ&md5=e9e30cc27e6ace8b2eaf0ed7ab270011CAS |

Szczepaniak M, Cieslak E, Bednarek PT (2002) Morphological and AFLP variation of Elymus repens (L.) Gould (Poaceae). Cellular & Molecular Biology Letters 7, 547–558.

Turner B, Paun O, Munzinger J, Duangjai S, Chase M, Samuel R (2013) Analyses of amplified fragment length polymorphisms (AFLP) indicate rapid radiation of Diospyros species (Ebenaceae) endemic to New Caledonia. BMC Evolutionary Biology 13, 269–284.
Analyses of amplified fragment length polymorphisms (AFLP) indicate rapid radiation of Diospyros species (Ebenaceae) endemic to New Caledonia.Crossref | GoogleScholarGoogle Scholar | 24330478PubMed |

Vekemans X (2002) ‘AFLP-SURV 1.0.’ (Distributed by the author. Laboratoire de Génétique et Ecologie Végétale, Université Libre de Bruxelles, Belgium) Available at http//www.ulb.ac.be/sciences/lagev. [Accessed 12 August 2013]

Vos P, Hogers R, Bleeker M, Reijans M, Van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23, 4407

Whalley RDB, Huxtable (1993) Domestication of the Australian perennial native grass, Microlaena stipoides. In ‘XVII international grassland congress’, (Eds MJ Baker, JR Crush, LK Humphreys) pp. 214–215. (New Zealand Grassland Association: Palmerston North, New Zealand)

Whalley RDB, Jones CE (1998) ‘Commercialisation and development of an agronomic package for Microlaena stipoides for forage and other purposes.’ UNE.039. (Meat and Livestock Australia: Sydney)