Interaction and quantitative trait loci
O. MayoCSIRO Livestock Industries, PO Box 10041, Adelaide BC, SA 5000, Australia. Email: oliver.mayo@csiro.au
Australian Journal of Experimental Agriculture 44(11) 1135-1140 https://doi.org/10.1071/EA03240
Submitted: 18 November 2003 Accepted: 23 July 2004 Published: 14 December 2004
Abstract
Parallel searches for quantitative trait loci (QTL) for growth-related traits in different populations frequently detect sets of QTL that hardly overlap. Thus, many QTL potentially exist. Tools for the detection of QTL that interact are available and are currently being tested. Initial results suggest that epistasis is widespread. Modelling of the first recognised interaction, dominance, continues to be developed. Multigenic interaction appears to be a necessary part of any explanation. This paper covers an attempt to link some of these studies and to draw inferences about useful approaches to understanding and using the genes that influence quantitative traits.
Acknowledgments
I thank Reinhard Bürger, Carolyn Leach, Scott Newman and John Sved for helpful discussion and 2 referees and the editor for identifying many problems in the original draft.
Bateman AJ
(1943) Specific differences in Petunia. II. Journal of Genetics 43, 236–242.
| Crossref |
Bidanel JP, Rothschild M
(2002) Current status of quantitative trait locus mapping in pigs. Pig News and Information 23, 39N–54N.
Bogdan M,
Ghosh JK, Doerge RW
(2004) Modifying the Schwartz Bayesian information criterion to locate multiple interacting quantitative trait loci. Genetics 167, 989–999.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Bradshaw HD,
Otto KG,
Frewen BE,
McKay JK, Schemske DW
(1998) Quantitative trait loci affecting floral morphology between two different species of monkeyflower (Mimulus). Genetics 149, 367–382.
| PubMed |
Chai CK
(1961) Analysis of quantitative inheritance of body size in mice. IV. An attempt to isolate polygenes. Genetical Research 2, 25–32.
Charlesworth B
(1998) The effect of synergistic epistasis on the inbreeding load. Genetical Research 71, 85–89.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Cheverud JM,
Routman EJ,
Duarte FAM,
van Swinderen B,
Cothran K, Perel C
(1996) Quantitative trait loci for murine growth. Genetics 142, 1305–1319.
| PubMed |
Fisher RA
(1918) On the correlations between relatives on the supposition of Mendelian inheritance. Transactions of the Royal Society of Edinburgh 52, 399–433.
Fisher RA
(1928) The possible modification of the response of the wild type to recurrent mutations. American Naturalist 62, 15–126.
Harushima Y,
Nakagahra M,
Yano M,
Sasaki T, Kurata N
(2001) A genome-wide survey of reproductive barriers in an intraspecific hybrid. Genetics 159, 883–892.
| PubMed |
Harushima Y,
Nakagahra M,
Yano M,
Sasaki T, Kurata N
(2002) Diverse variation of reproductive barriers in three intraspecific rice crosses. Genetics 160, 313–322.
| PubMed |
Kacser H, Burns JA
(1981) The molecular basis of dominance. Genetics 97, 639–666.
| PubMed |
Kärkkäinen K,
Koski V, Savolainen O
(1996) Geographical variation in the inbreeding of Scots pine. Evolution 50, 111–119.
| Crossref |
Keightley PD
(1998) Genetic basis of response to 50 generations of selection on body weight in inbred mice. Genetics 148, 1931–1939.
| PubMed |
Keightley PD,
Hardge T,
May L, Bulfield G
(1996) A genetic map of quantitative trait loci for body weight in the mouse. Genetics 142, 227–235.
| PubMed |
Keightley PD, Knott SA
(1999) Testing the correspondence between map positions of quantitative trait loci. Genetical Research 74, 323–328.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Luo LJ,
Li Z-K,
Mei HW,
Shu QY,
Tabien R,
Zhong DB,
Ying CS,
Stansel JW,
Khush GS, Paterson AH
(2001) Overdominant epistatic loci are the primary genetic basis of inbreeding depression and heterosis in rice. II. Grain yield components. Genetics 158, 1755–1771.
| PubMed |
Mayo O
(1996) The application of QTL methodology to Merino breeding. Wool Technology and Sheep Breeding 44, 281–289.
Mayo O, Bürger R
(1997) The evolution of dominance: a theory whose time has passed? Biological Reviews 72, 97–110.
| Crossref | GoogleScholarGoogle Scholar |
Mayo O, Hopkins AM
(1985) Problems in estimating the minimum number of genes contributing to quantitative variation. Biomedical Journal 27, 181–187.
Omholt S,
Plahte E,
Oyehaug L, Xiang K
(2000) Gene regulatory networks generating the phenomena of additivity, dominance and epistasis. Genetics 155, 969–980.
| PubMed |
Otto SP, Jones CD
(2000) Detecting the undetected: estimating the total number of loci underlying a quantitative trait. Genetics 156, 2093–2107.
| PubMed |
Rebbeck TR,
Kanetsky PA,
Walker AH,
Holmes R,
Halpert AC,
Schucht LM,
Elder DE, Guerry D
(2002) P gene as an inherited biomarker of human eye color. Cancer Epidemiology and Biomarker Prevention 11, 782–784.
Reifsnyder PC,
Churchill G, Leiter EH
(2000) Maternal environment and genotype interact to establish diabesity in mice. Genome Research 10, 1568–1578.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Remington DL, O’Malley DM
(2000) Whole-genome characterization of embryonic stage inbreeding depression in a selfed loblolly pine family. Genetics 155, 337–348.
| PubMed |
Robin C,
Lyman RF,
Long AD,
Langley CH, Mackay TFC
(2002) hairy: a quantitative trait locus for Drosophila sensory bristle number. Genetics 162, 155–164.
| PubMed |
Roff DA
(2002) Inbreeding depression: tests of the overdominance and partial dominance hypotheses. Evolution 56, 768–775.
| PubMed |
Schadt EE,
Monks SA,
Drake TA,
Lusis AJ, Che N , et al.
(2003) Genetics of gene expression surveyed in maize, mouse and man. Nature 422, 297–302.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Wang DL,
Zhu J,
Li ZK, Paterson AH
(1999) Mapping QTL with epistatic effects and QTL × environment interactions by mixed model approaches. Theoretical and Applied Genetics 99, 1255–1264.
| Crossref | GoogleScholarGoogle Scholar |
Wilkie AOM
(1994) The molecular basis of genetic dominance. Journal of Medical Genetics 31, 89–98.
| Crossref |
PubMed |
Wright S
(1929) Fisher’s theory of dominance. American Naturalist 63, 274–279.
| Crossref |
Yi N, Xu S
(2002) Mapping quantitative trait loci with epistatic effects. Genetical Research 79, 185–198.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Zhu G,
Evans DM,
Duffy DL,
Montgomery GW, Medland SE , et al.
(2004) A genome scan for eye color in 502 twin families: most variation is due to a QTL on chromosome 15q. Twin Research 7, 197–210.
| Crossref | GoogleScholarGoogle Scholar | PubMed |