Biofilm compartmentalisation of the rumen microbiome: modification of fermentation and degradation of dietary toxins
R. A. LengSchool of Environmental and Rural Science, University of New England, Armidale, NSW 2351, Australia. Email: rleng@ozemail.com.au
Animal Production Science 57(11) 2188-2203 https://doi.org/10.1071/AN17382
Submitted: 7 June 2017 Accepted: 27 July 2017 Published: 4 September 2017
Abstract
Many deleterious chemicals in plant materials ingested by ruminants produce clinical effects, varying from losses of production efficiency through to death. Many of the effects are insidious, often going unrecognised by animal managers. When secondary plant compounds enter the rumen, they may undergo modification by rumen microbes, which often removes the deleterious compounds, but in specific instances, the deleterious effect may be enhanced. Improved understanding of rumen ecology, particularly concerning the biofilm mode of microbial fermentation, has led to major advances in our understanding of fermentation. In the present review, the potential impact of the physical structuring of the rumen microbiome is discussed in relation to how several economically important secondary plant compounds and other toxins are metabolised by the rumen microbiome and how their toxic effects may be remedied by providing inert particles with a large surface area to weight ratio in the diet. These particles provide additional surfaces for attachment of rumen microorganisms that help alleviate toxicity problems associated with deleterious compounds, including fluoroacetate, mimosine, mycotoxins, cyanoglycosides and hydrogen cyanide. The review first summarises the basic science of biofilm formation and describes the properties of biofilms and their roles in the rumen. It then addresses how biofilms on inert solids and fermentable particulates may assist in detoxification of potentially toxic compounds. A hypothesis that explains how nitrate poisoning may occur as a result of compartmentalisation of nitrate and nitrite reduction in the rumen is included.
Additional keywords: fluoroacetate, mimosine, mycotoxins, nitrate.
References
Abe M, Iriki T, Tobe N, Shibui H (1981) Sequestration of holotrich protozoa in the reticulo-rumen of cattle. Applied and Environmental Microbiology 41, 758–765.Adjovi YCS, Gnonlonfin BJG, Bailly S, Bailly J-D, Tadrist S, Puel O, Oswald IP, Sanni A (2015) Occurrence of mycotoxins in cassava (Manihot esculenta Crantz) and its products International Journal of Food Safety, Nutrition and Public Health 5, 217–247.
| Occurrence of mycotoxins in cassava (Manihot esculenta Crantz) and its productsCrossref | GoogleScholarGoogle Scholar |
Akin DE (1976) Ultrastructure of rumen bacterial attachment to forage cell walls. Applied and Environmental Microbiology 31, 562–568.
Alaboudi R, Jones GA (1985) Effects of acclimation to high nitrate intake on some rumen fermentation parameters in sheep. Canadian Journal of Animal Science 65, 841–849.
| Effects of acclimation to high nitrate intake on some rumen fermentation parameters in sheep.Crossref | GoogleScholarGoogle Scholar |
Allison MJ, Reddy CA (1984) ‘Adaptations of gastrointestinal bacteria in response to changes in dietary oxalate and nitrate. In ‘3rd international symposium on microbial ecology’. (Eds MJ Klug, CA Reddy) (American Society of Microbiology: Washington, DC)
Allison MJ, Mayberr WR, McSweeney CS, Stahl DA (1992) Synergistes jonesii, gen nov.: a rumen bacterium that degrades toxic pyridinediols. Systematic and Applied Microbiology 15, 522–529.
| Synergistes jonesii, gen nov.: a rumen bacterium that degrades toxic pyridinediols.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK3sXisFWhsrY%3D&md5=95c0e713589b1e33e2a080ff03a21928CAS |
Annison EF, Bryden WL (1998) Perspective on ruminant nutrition and metabolism: I. Metabolism in the rumen. Nutrition Research Reviews 11, 173–178.
| Perspective on ruminant nutrition and metabolism: I. Metabolism in the rumen.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK1MXhs12nurc%3D&md5=34790a61e4e96337bbe2a84d5d1999baCAS |
Aung A, ter Meulen U, Gesser F, Bohnel H (2011) Isolation of mimosine degrading bacteria from the rumen juice and mass production by Gottingen bioreactor technology. Journal of Agricultural Science and Technology A 1, 764–772.
Aung A, Htun T, Naing O, Mar Kyi M, Ngwe T (2013) Development of leucaena mimosine degrading bacteria in the rumen of sheep in Myanmar tropical grasslands. Forrajes Tropicales 1, 48–49.
| Development of leucaena mimosine degrading bacteria in the rumen of sheep in Myanmar tropical grasslands.Crossref | GoogleScholarGoogle Scholar |
Ballhorn DJ, Heil M, Pietrowski A, Lieberei R (2007) Quantitative effects of cyanogenesis on an adapted herbivore. Journal of Chemical Ecology 33, 2195–2208.
| Quantitative effects of cyanogenesis on an adapted herbivore.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2sXhtl2ks7rJ&md5=de4102670bc7921f569b499f56851b06CAS |
Battin TJ, Besemer K, Bengtsson MM, Romani AM, Packmann AI (2016) The ecology and biogeochemistry of stream biofilms. Nature Reviews. Microbiology 14, 251–263.
| The ecology and biogeochemistry of stream biofilms.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC28XktVOksLc%3D&md5=6d6df40bc8328d7a353e39b27c116d75CAS |
Berg Miller ME, Yeoman CJ, Chia N, Tringe SG, Angly FE, Edwards RA, Flint HJ, Lamed R, Bayer EA, White BA (2012) Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome. Environmental Microbiology 14, 207–227.
| Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XislWnu7w%3D&md5=4fb116375ba984dead3c2a3ede5f7cd7CAS |
Berlanga M, Guerrero R (2016) Living together in biofilms: the microbial cell factory and its biotechnological implications. Microbial Cell Factories 15, 165
| Living together in biofilms: the microbial cell factory and its biotechnological implications.Crossref | GoogleScholarGoogle Scholar |
Binh PLT, Preston TR, Duong KN, Leng RA (2017) A low concentration (4% in diet dry matter) of brewers’ grains improves the growth rate and reduces thiocyanate excretion of cattle fed cassava pulp-urea and ‘bitter’ cassava foliage. Livestock Research for Rural Development 29, 104
Bollinger RR, Everett ML, Wahl SD, Lee YH, Orndorff PE, Parker W (2006) Secretory IgA and mucin-mediated biofilm formatation by environmental strains of Escherichia coli: role of type 1 pili. Molecular Immunology 43, 378–387.
| Secretory IgA and mucin-mediated biofilm formatation by environmental strains of Escherichia coli: role of type 1 pili.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2MXht1Cmu7vF&md5=e30ca364ab10656d165a1111469f575fCAS |
Bollinger RR, Barbas AS, Bush EL, Lin SS, Parker W (2007) Biofilms in the normal human large bowel: fact rather than fiction. Gut 56, 1481–1482.
Borrel G, Parisot N, Harris HM, Peyretaillade E, Gaci N, Tottey W, Bardot O, Raymann K, Gribaldo S, Peyret P, O’Toole PW, Brugere JF (2014) Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine. BMC Genomics 15, 679
| Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.Crossref | GoogleScholarGoogle Scholar |
Božic AK, Anderson RC, Carstens GE, Ricke SC, Callaway TR, Yokoyama MT, Wang JK, Nisbet DJ (2009) Effects of the methane-inhibitors nitrate, nitroethane, lauric acid, Lauricidin and the Hawaiian marine algae Chaetoceros on ruminal fermentation in vitro. Bioresource Technology 100, 4017–4025.
| Effects of the methane-inhibitors nitrate, nitroethane, lauric acid, Lauricidin and the Hawaiian marine algae Chaetoceros on ruminal fermentation in vitro.Crossref | GoogleScholarGoogle Scholar |
Brewbaker JL, Sorensson CT (1990) New tree crops from interspecific leucaena hybrids. In ‘Advances in new crops’. (Eds J Janick, JE Simon) pp. 283–289. (Timber Press: Portland, OR)
Brulc JM, Antonopoulos DA, Miller ME, Wilson MK, Yannarell AC, Dinsdale EA, Edwards RE, Frank ED, Emerson JB, Wacklin P, Coutinho PM, Henrissat B, Nelson KE, White BA (2009) Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proceedings of the National Academy of Sciences of the United States of America 106, 1948–1953.
| Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXitVKitro%3D&md5=fa4a1e1be48c9c0a1f484a5a64c3c679CAS |
Bruning-Fann CS, Kaneene JB (1993) The effects of nitrate, nitrite and N-nitroso compounds on human health: a review. Veterinary and Human Toxicology 35, 521–538.
Bryden WL (2012) Mycotoxin contamination of the feed supply chain: implications for animal productivity and feed security. Animal Feed Science and Technology 173, 134–158.
| Mycotoxin contamination of the feed supply chain: implications for animal productivity and feed security.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XjvVentLw%3D&md5=6e34e2a773a7f0b9dffe83bf902a25bcCAS |
Camboim EK, Almeida AP, Tadra-Sfeir MZ, Junior FG, Andrade PP, McSweeney CS, Melo MA, Riet-Correa F (2012) Isolation and identification of sodium fluoroacetate degrading bacteria from caprine rumen in Brazil. Scientific World Journal 2012, 178254
Cheng KJ, Fay JP, Coleman RN, Milligan LP, Costerton JW (1981) Formation of bacterial microcolonies on feed particles in the rumen. Applied and Environmental Microbiology 41, 298–305.
Cobon OH, Stephenson RGA, Hopkins PS (1992) The effect of oral administration of methionine, bentonite, methionine/bentonite and methionine/oil homogenates on wool production of grazing and penned sheep in a semi-arid tropical environment. Australian Journal of Experimental Agriculture 32, 435–441.
| The effect of oral administration of methionine, bentonite, methionine/bentonite and methionine/oil homogenates on wool production of grazing and penned sheep in a semi-arid tropical environment.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK3sXkvFCgsrY%3D&md5=282726bd1c0ac508d38b338a3ca458f8CAS |
Conrad R (1996) Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO). Microbiological Reviews 60, 609–640.
Cord-Ruwisch R, Seitz HJ, Conrad R (1988) The capacity of hydrogenotrophic anaerobic bacteria to compete for traces of hydrogen depends on the redox potential of the terminal electron acceptor. Archives of Microbiology 149, 350–357.
| The capacity of hydrogenotrophic anaerobic bacteria to compete for traces of hydrogen depends on the redox potential of the terminal electron acceptor.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaL1cXht1yhurc%3D&md5=c0061fb1cfa77ed0e0ffcdd58c5076d0CAS |
Costerton JW (2007) The biofilm primer. In ‘Springer series on biofilms’. (Ed. C Eckey) pp. 165. (Springer-Verlag: Berlin)
Daniel SL, Cook HM, Hartman PA, Allison MJ (1989) Enumeration of anaerobic oxalate degrading bacteria in the ruminal contents of sheep. FEMS Microbial Ecology 62, 329–334.
| Enumeration of anaerobic oxalate degrading bacteria in the ruminal contents of sheep.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaL1MXltFCht7g%3D&md5=bd14b2e27360f6757349b3dab1550711CAS |
Davies DG (1999) Regulation of matrix polymer in biofilm formation and dispersion. In ‘Microbial extracellular polymeric substances: characterization, structure and function’. (Eds J Wingender, TR Neu, H-C Flemming) pp. 93–117. (Springer: Berlin)
Davis CK (2015) Leucaena rumen inoculum: composition and activity along the supply chain. Final report B.NBP.0720 by Department of Agriculture and Fisheries, Queensland, Australia. Meat and Livestock Australia, Sydney.
Davis CK, Webb RI, Sly LI, Denman SE, McSweeney CS (2012) Isolation and survey of novel fluoroacetate-degrading bacteria belonging to the phylum Synergistetes. FEMS Microbiology Ecology 80, 671–684.
| Isolation and survey of novel fluoroacetate-degrading bacteria belonging to the phylum Synergistetes.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XnvVKis7Y%3D&md5=4b664f2d5cfc3b10b79ce07fa14ae2bbCAS |
Dawson CC, Intapa C, Jabra-Rizk MA (2011) ‘Persisters’: survival at the cellular level. PLoS Pathogens 7, e1002121
| ‘Persisters’: survival at the cellular level.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3MXhtVOrt73J&md5=0efd642bfa9cec9976d9ce02cc6db186CAS |
de Bok FA, Plugge CM, Stams AJ (2004) Interspecies electron transfer in methanogenic propionate degrading consortia. Water Research 38, 1368–1375.
| Interspecies electron transfer in methanogenic propionate degrading consortia.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2cXhvVGgs78%3D&md5=6b59656fb409370f86d1cb96d8eef7a6CAS |
De Mulder T, Goossens K, Peiren N, Vandaele L, Haegeman A, De Tender C, Ruttink T, de Wiele TV, De Campeneere S (2016) Exploring the methanogen and bacterial communities of rumen environments: solid adherent, fluid and epidural. FEMS Microbiology Ecology
| Exploring the methanogen and bacterial communities of rumen environments: solid adherent, fluid and epidural.Crossref | GoogleScholarGoogle Scholar |
Denman SE, Nicholson MJ, Brookman JL, Theodorou MK, McSweeney CS (2008) Detection and monitoring of anaerobic rumen fungi using an ARISA method. Letters in Applied Microbiology 47, 492–499.
| Detection and monitoring of anaerobic rumen fungi using an ARISA method.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXps1Ontw%3D%3D&md5=188791a4bfd998cf850060535a506347CAS |
Eady SJ, Pritchard DA, Martin MDJ (1990) The effect of sodium bentonite or zeolite on wool growth of sheep fed either mulga (Acacia aneura) or lucerne (Medicago sativa). Proceedings of the Australian Society of Animal Production 18, 188–191.
Edwards JE, Huws SA, Kim EJ, Kingston-Smith AH (2007) Characterization of the dynamics of initial bacterial colonization of nonconserved forage in the bovine rumen. FEMS Microbiology Ecology 62, 323–335.
| Characterization of the dynamics of initial bacterial colonization of nonconserved forage in the bovine rumen.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2sXhsValtr7F&md5=094aa1eac886830967d84dbc21a1d730CAS |
Edwards JE, Huws SA, Kim EJ, Lee MR, Kingston-Smith AH, Scollan ND (2008) Advances in microbial ecosystem concepts and their consequences for ruminant agriculture. Animal 2, 653–660.
| Advances in microbial ecosystem concepts and their consequences for ruminant agriculture.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DC%2BC38vptVykuw%3D%3D&md5=4ab3c26bf543c3d7583a824774b4bfb8CAS |
Fenn PD, Leng RA (1989a) Effects of bentonite on wool growth of faunated and fauna-free sheep. In ‘The roles of protozoa and fungi in ruminant digestion’. (Eds JV Nolan, RA Leng, DI Demeyer) (The University of New England Publishing Unit: Armidale, NSW)
Fenn PD, Leng RA (1989b) Wool growth and sulfur amino acid entry rate in sheep fed roughage based diets supplemented with bentonite and sulfur amino acids. Australian Journal of Agricultural Research 40, 889–896.
| Wool growth and sulfur amino acid entry rate in sheep fed roughage based diets supplemented with bentonite and sulfur amino acids.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK3cXlsVWnsw%3D%3D&md5=d56cfb600acc990e68856dd0c3fd38d1CAS |
Fenn PD, Leng RA (1990) The effect of bentonite supplementation on ruminal protozoa density and wool growth in sheep either fed roughage based diets or grazing. Australian Journal of Agricultural Research 41, 167–174.
| The effect of bentonite supplementation on ruminal protozoa density and wool growth in sheep either fed roughage based diets or grazing.Crossref | GoogleScholarGoogle Scholar |
Fink-Gremmels J (2008) Mycotoxins in cattle feeds and carry-over to dairy milk: a review. Food Additives & Contaminants. Part A, Chemistry, Analysis, Control, Exposure & Risk Assessment 25, 172–180.
| Mycotoxins in cattle feeds and carry-over to dairy milk: a review.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1cXitFKhsb4%3D&md5=21b7e98f265b6bd581c80142ca57954dCAS |
Flemming HC (2016) EPS: then and now. Microorganisms 4, 41
| EPS: then and now.Crossref | GoogleScholarGoogle Scholar |
Flemming H-C, Leis AP (Ed. G Bitton (2002) ‘Encyclopedia of environmental microbiology.’ (Wiley: New York)
Flemming H-C, Wingender J (2010) The biofilm matrix. Nature Reviews. Microbiology 8, 623–633.
Flemming HC, Neu TR, Wozniak DJ (2007) The EPS matrix: the ‘house of biofilm cells’. Journal of Bacteriology 189, 7945–7947.
| The EPS matrix: the ‘house of biofilm cells’.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2sXhtlyht7zN&md5=8b5399c0e8c445f1bc7cf327ad085935CAS |
Flemming H-C, Wingender J, Szewzyk U, Steinberg P, Rice SA, Kjelleberg S (2016) Biofilms: an emergent form of bacterial life. Nature Reviews. Microbiology 14, 563–575.
| Biofilms: an emergent form of bacterial life.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC28Xhtlejur%2FO&md5=537f7722f02ea78eb2cd3bb951dd6b93CAS |
Forster RJ, Leng RA (1989a) The effect on sheep of varying protozoal populations and bentonite supplementation in the drinking water. In ‘The roles of protozoa and fungi in ruminant digestion’. (Eds JV Nolan, RA Leng, DI Demeyer) pp. 331–332. (Penambul Books: Armidale, NSW)
Forster RJ, Leng RA (1989b) Effects of bentonite and maize supplementson production of wool in sheep. In ‘Recent Advances in Animal Nutrition in Australia.’ (Ed. DJ Farrell) (The University of New England Publishing Unit: Armidale, NSW)
Gallo A, Giuberti G, Frisvad JC, Bertuzzi T, Nielsen KF (2015) Review on mycotoxin Iissues in ruminants: occurrence in forages, effects of mycotoxin ingestion on health status and animal performance and practical strategies to counteract their negative effects. Toxins 7, 3057–3111.
| Review on mycotoxin Iissues in ruminants: occurrence in forages, effects of mycotoxin ingestion on health status and animal performance and practical strategies to counteract their negative effects.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC28XpsFOrt7c%3D&md5=c2c189d1ffde20fcf6debe565a4c39d7CAS |
Ghosh MK, Bandyopadhyay S (2007) Mimosine toxicity-a problem of Leucaena feeding in ruminants. Asian Journal of Animal and Veterinary Advances 2, 63–73.
| Mimosine toxicity-a problem of Leucaena feeding in ruminants.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2sXhtVersb3E&md5=213ed6534ed98e59987d405a826f7cfaCAS |
Gilbert RA, Klieve AV (2015) Ruminal viruses (Bacteriophages, Archaeaphages). In ‘Rumen microbiology: from evolution to revolution’. (Eds AN Puniya, R Singh, DN Kamra) pp. 121–141. (Springer: New Delhi, India)
Gregg K, Hamdorf B, Henderson K, Kopecny J, Wong C (1998) Genetically modified ruminal bacteria protect sheep from fluoroacetate poisoning. Applied and Environmental Microbiology 64, 3496–3498.
Guppy M, Withers P (1999) Metabolic depression in animals: physiological perspectives and biochemical generalizations. Biological Reviews of the Cambridge Philosophical Society 74, 1–40.
| Metabolic depression in animals: physiological perspectives and biochemical generalizations.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DyaK1MzisVGjtw%3D%3D&md5=523de8233961989cfc16d4965e30507cCAS |
Halliday MJ, Padmanabha J, McSweeney CS, Kerven G, Shelton HM (2013) Leucaena toxicity: a new perspective on the most widely used forage tree legume. In ‘Proceedings of the 22nd international grassland congress: revitalising grasslands to sustain our communities’, 15–19 September 2013, Darling Harbour, NSW, Australia. (Eds DL Michalk, GD Millar, WB Badgery, KM Broadfoot) pp. 179–187.
Henderson G, Cox F, Ganesh S, Jonker A, Young W, Global Rumen Census C, Janssen PH (2015) Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range. Scientific Reports 5, 14567
| Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC2MXhs1Kks7zE&md5=7e75ff77d68d215e2c5199a5b79b906fCAS |
Høiby N (2014) A personal history of research on microbial biofilms and biofilm infections. Pathogens and Disease 70, 205–211.
| A personal history of research on microbial biofilms and biofilm infections.Crossref | GoogleScholarGoogle Scholar |
Huws SA, Mayorga OL, Theodorou MK, Onime LA, Kim EJ, Cookson AH, Newbold CJ, Kingston-Smith AH (2013) Successional colonization of perennial ryegrass by rumen bacteria. Letters in Applied Microbiology 56, 186–196.
| Successional colonization of perennial ryegrass by rumen bacteria.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3sXjtVakur8%3D&md5=04fec4c75f46ea5037ac97edc3bf386bCAS |
Huws SA, Mayorga OL, Theodorou MK, Kim E, Cookson AH, Newbold CJ, Kingston-Smith AH (2014) Differential colonization of plant parts by the rumen microbiota is likely to be due to different forage chemistries. Journal of Microbial & Biochemical Technology 6, 80–86.
| Differential colonization of plant parts by the rumen microbiota is likely to be due to different forage chemistries.Crossref | GoogleScholarGoogle Scholar |
Ishaq SL, Kim CJ, Reis D, Wright AD (2015) Fibrolytic bacteria isolated from the rumen of North American moose (Alces alces) and their use as a probiotic in neonatal lambs. PLoS One 10, e0144804
| Fibrolytic bacteria isolated from the rumen of North American moose (Alces alces) and their use as a probiotic in neonatal lambs.Crossref | GoogleScholarGoogle Scholar |
Ivan M, Dayrell MD, Mahadevan S, Hidiroglou M (1992) Effects of bentonite on wool growth and nitrogen metabolism in fauna-free and faunated sheep. Journal of Animal Science 70, 3194–3202.
| Effects of bentonite on wool growth and nitrogen metabolism in fauna-free and faunated sheep.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK3sXnvF2ksA%3D%3D&md5=dea470963b59d8a32fca6d2b7e295496CAS |
Iwamoto M, Asanuma N, Hino T (2001) The effects of protozoa on nitrate and nitrite reduction in ruminal microbiota. Kanto Journal of Animal Science 51,
James LF, Allison MJ, Littledike ET (1975) Production and modification of toxic substances in the rumen. In ‘Digestion and metabolism in the ruminant’. (Eds IW McDonald, ACI Warner) pp. 576–590. (University of New England Publishing Unit: Armidale, NSW)
Jones RJ, Megarrity RG (1983) Comparative toxicity responses of goats fed on Leucaena leucocephala in Australia and Hawaii. Crop and Pasture Science 34, 781–790.
| Comparative toxicity responses of goats fed on Leucaena leucocephala in Australia and Hawaii.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaL2cXitVyisbs%3D&md5=17353c52318bac3fbda03487b9ebd406CAS |
Jumas-Bilak E, Carlier JP, Jean-Pierre H, Citron D, Bernard K, Damay A, Gay B, Teyssier C, Campos J, Marchandin H (2007) Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum ‘Synergistetes’ isolated from man. International Journal of Systematic and Evolutionary Microbiology 57, 2743–2748.
| Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum ‘Synergistetes’ isolated from man.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1cXlsVOluw%3D%3D&md5=d6742a969ec9e3260b97c040d694bf24CAS |
Kiessling KH, Pettersson H, Sandholm K, Olsen M (1984) Metabolism of aflatoxin, ochratoxin, zearalenone, and three trichothecenes by intact rumen fluid, rumen protozoa, and rumen bacteria. Applied and Environmental Microbiology 47, 1070–1073.
Klieve AV, Ouwerkirk D, Turner A, Roberts R (2002) The production and storage of a fermenter-grown bacterial culture containing Synergistes jonesii, for protecting cattle against mimosine and 3-hydroxy-4(1H)-pyridone toxicity from feeding on Leucaena leucocephala. Australian Journal of Agricultural Research 53, 1–5.
| The production and storage of a fermenter-grown bacterial culture containing Synergistes jonesii, for protecting cattle against mimosine and 3-hydroxy-4(1H)-pyridone toxicity from feeding on Leucaena leucocephala.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD38XhsVGrtL4%3D&md5=9aed6aa4992923faa9899ae06c434b99CAS |
Knowles CJ (1976) Microorganisms and cyanide. Bacteriological Reviews 40, 652–680.
Kohl KD, Dearing MD (2016) The woodrat gut microbiota as an experimental system for understanding microbial metabolism of dietary toxins. Frontiers in Microbiology 7, 1165
| The woodrat gut microbiota as an experimental system for understanding microbial metabolism of dietary toxins.Crossref | GoogleScholarGoogle Scholar |
Krause DO, Nagaraja TG, Wright AD, Callaway TR (2013) Board-invited review: rumen microbiology: leading the way in microbial ecology. Journal of Animal Science 91, 331–341.
| Board-invited review: rumen microbiology: leading the way in microbial ecology.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3sXjsFKiu7Y%3D&md5=6ed31cbdb896fe8b7d507fb95188e777CAS |
Krebs GL (1978) ‘The rumen ecosystem: kinetics of microbial pools and effects on microbial protein yield.’ PhD Thesis, University of New England, Armidale, NSW.
Krüger M, Grosse-Herrenthey A, Schrodl W, Gerlach A, Rodloff A (2012) Visceral botulism at dairy farms in Schleswig Holstein, Germany: prevalence of Clostridium botulinum in feces of cows, in animal feeds, in feces of the farmers, and in house dust. Anaerobe 18, 221–223.
| Visceral botulism at dairy farms in Schleswig Holstein, Germany: prevalence of Clostridium botulinum in feces of cows, in animal feeds, in feces of the farmers, and in house dust.Crossref | GoogleScholarGoogle Scholar |
Lappin-Scott HM, Costerton JW (1992) Ultramicrobacteria and their biotechnological applications. Current Opinion in Biotechnology 3, 283–285.
| Ultramicrobacteria and their biotechnological applications.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK38Xmt12ltLY%3D&md5=3e9092abc30050c7d69452d2967a1c15CAS |
Larue R, Yu Z, Parisi VA, Egan AR, Morrison M (2005) Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing. Environmental Microbiology 7, 530–543.
| Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2MXjsF2itb8%3D&md5=a065be281c12c3d4fd1aa1eae060bf53CAS |
Lawrence JR, Swerhone GD, Kuhlicke U, Neu TR (2007) In situ evidence for microdomains in the polymer matrix of bacterial microcolonies. Canadian Journal of Microbiology 53, 450–458.
| In situ evidence for microdomains in the polymer matrix of bacterial microcolonies.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2sXntV2ms70%3D&md5=3333871d02ecf8ea2e0d7a1e91b00a2cCAS |
Leng RA (2008) The potential of feeding nitrate to reduce enteric methane production in ruminants. Department of Climate Change, Commonwealth Government of Australia, Canberra.
Leng RA (2011) The rumen-a fermentation vat or a series of organised structured microbial consortia: implications for the mitigation of enteric methane production by feed additives. Livestock Research for Rural Development 23, Article #258
Leng RA (2014) Interactions between microbial consortia in biofilms: a paradigm shift in rumen microbial ecology and enteric methane mitigation. Animal Production Science 54, 519–537.
| Interactions between microbial consortia in biofilms: a paradigm shift in rumen microbial ecology and enteric methane mitigation.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC2cXls1ehtrw%3D&md5=77e2f62de5a8181e8746844f45dfa978CAS |
Leng RA (2017) Unravelling methanogenesis in kangaroos, horses and ruminants: the links between gut anatomy, microbial biofilms and host immunity. Animal Production Science
| Unravelling methanogenesis in kangaroos, horses and ruminants: the links between gut anatomy, microbial biofilms and host immunity.Crossref | GoogleScholarGoogle Scholar | in press.
Leng RA, Preston TR, Inthapanya S (2012) Biochar reduces enteric methane and improves growth and feed conversion in local ‘yellow’ cattle fed cassava root chips and fresh cassava foliage. Livestock Research for Rural Development 24, 199
Lennon JT, Jones SE (2011) Microbial seed banks: the ecological and evolutionary implications of dormancy. Nature Reviews. Microbiology 9, 119–130.
| Microbial seed banks: the ecological and evolutionary implications of dormancy.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3MXlsFeguw%3D%3D&md5=aca139f74507c1270e02e77f84a885c9CAS |
Leong LE, Denman SE, Hugenholtz P, McSweeney CS (2016) Amino acid and peptide utilization profiles of the fluoroacetate-degrading bacterium synergistetes strain MFA1 under varying conditions. Microbial Ecology 71, 494–504.
| Amino acid and peptide utilization profiles of the fluoroacetate-degrading bacterium synergistetes strain MFA1 under varying conditions.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC2MXhtFSjtrfK&md5=bae4beb58d454e759b28b36ce4e46b0aCAS |
Lin M, Schaefer DM, Guo WS, Ren LP, Meng QX (2011) Comparisons of in vitro nitrate reduction, methanogenesis, and fermentation acid profile among rumen bacterial, protozoal and fungal fractions. Asian-Australasian Journal of Animal Sciences 24, 471–478.
| Comparisons of in vitro nitrate reduction, methanogenesis, and fermentation acid profile among rumen bacterial, protozoal and fungal fractions.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3MXlvFWlur4%3D&md5=eaf3c0bae23aebc43a65255fce7a54e1CAS |
Liu W, Roder HL, Madsen JS, Bjarnsholt T, Sorensen SJ, Burmolle M (2016) Interspecific bacterial interactions are reflected in multispecies biofilm spatial organization. Frontiers in Microbiology 7, 1366
| Interspecific bacterial interactions are reflected in multispecies biofilm spatial organization.Crossref | GoogleScholarGoogle Scholar |
Loffler FE, Tiedje JM, Sanford RA (1999) Fraction of electrons consumed in electron acceptor reduction and hydrogen thresholds as indicators of halorespiratory physiology. Applied and Environmental Microbiology 65, 4049–4056.
| Fraction of electrons consumed in electron acceptor reduction and hydrogen thresholds as indicators of halorespiratory physiology.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK1MXlvFequrs%3D&md5=cbb311e3daae88282733de0efe40ea0dCAS |
Loughnan ML (1983) Synthesis of methane in the rumen in the presence or absence of chemical manipulators of fermentation. Master of Rural Science Thesis, University of New England, Armidale, NSW.
Lovley DR (1985) Minimum threshold for hydrogen metabolism in methanogenic bacteria. Applied and Environmental Microbiology 49, 1530–1531.
Lovley D, Godwin S (1988) Hydrogen concentrations as an indicator of the predominant terminal electron-accepting reactions in aquatic sediments Geochimica et Cosmochimica Acta 52, 2993–3003.
| Hydrogen concentrations as an indicator of the predominant terminal electron-accepting reactions in aquatic sedimentsCrossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaL1MXot1SltQ%3D%3D&md5=2ff5a7d283e1d9457cb45364e41a3cf5CAS |
Madsen JS, Lin YC, Squyres GR, Price-Whelan A, de Santiago Torio A, Song A, Cornell WC, Sorensen SJ, Xavier JB, Dietrich LE (2015) Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models. Applied and Environmental Microbiology 81, 8414–8426.
| Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC28XhtFOjs73L&md5=80fab8b7470a0deedfffe47e49011d32CAS |
Marais JP, Therion JJ, Mackie RI, Kistner A, Dennison C (1988) Effect of nitrate and its reduction products on the growth and activity of the rumen microbial population. British Journal of Nutrition 59, 301–313.
| Effect of nitrate and its reduction products on the growth and activity of the rumen microbial population.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaL1cXhsV2js7Y%3D&md5=412272fb7820f1acd00388fad1131cdeCAS |
Martins M, Barros AA, Quraishi S, Gurikov P, Raman SP, Smirnova I, Duarte ARC, Reis RL (2015) Preparation of macroporous alginate-based aerogels for biomedical applications. The Journal of Supercritical Fluids 106, 152–159.
| Preparation of macroporous alginate-based aerogels for biomedical applications.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC2MXps1eiurg%3D&md5=dfd03a127a5768c9ddb414fd7758dd8fCAS |
Matzinger P (1994) Tolerance, danger, and the extended family. Annual Review of Immunology 12, 991–1045.
| Tolerance, danger, and the extended family.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DyaK2c3otVOqsA%3D%3D&md5=3ae01d24df04bd2ec41eed43186a4237CAS |
Matzinger P (2012) The evolution of the danger theory. Interview by Lauren Constable, Commissioning Editor. Expert Review of Clinical Immunology 8, 311–317.
| The evolution of the danger theory. Interview by Lauren Constable, Commissioning Editor.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38Xnt1yqsrc%3D&md5=75b6732c7e69a611a7c76bb8ea69cc81CAS |
Mayer C, Moritz R, Kirschner C, Borchard W, Maibaum R, Wingender J, Flemming HC (1999) The role of intermolecular interactions: studies on model systems for bacterial biofilms. International Journal of Biological Macromolecules 26, 3–16.
| The role of intermolecular interactions: studies on model systems for bacterial biofilms.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK1MXlvVWrt74%3D&md5=4dffa63912a6340aac568ff0038c9175CAS |
McAllister TA, Bae HD, Jones GA, Cheng KJ (1994) Microbial attachment and feed digestion in the rumen. Journal of Animal Science 72, 3004–3018.
McSweeney CS, Mackie R (2012) ‘Micro-organisms and ruminant digestion: state of knowledge, trends and future prospects.’ Commission on genetic resources for food and agriculture. Background study paper no. 61. (FAO: Rome)
McSweeney CS, Makkar HPS, Reed JD (2003) Modification of rumen fermentation for detoxification of harmful plant compounds. In ‘Proceedings of the 6th international symposium on the nutrition of herbivores’. (Ed. L Mannetje) pp. 239–268. (Merida: Yucatan, Mexico)
Miller WG, Wang G, Binnewies TT, Parker CT (2008) The complete genome sequence and analysis of the human pathogen Campylobacter lari. Foodborne Pathogens and Disease 5, 371–386.
| The complete genome sequence and analysis of the human pathogen Campylobacter lari.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1cXhtVWksbjK&md5=d72fb44082d6ae3b311e0d83fba92737CAS |
Miron J, Ben-Ghedalia D, Morrison M (2001) Invited review: adhesion mechanisms of rumen cellulolytic bacteria. Journal of Dairy Science 84, 1294–1309.
| Invited review: adhesion mechanisms of rumen cellulolytic bacteria.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3MXktlKhu7c%3D&md5=d8e13d9288e39fc342d99357185a9b82CAS |
Murray PJ, Rowe JB, Aitchison EM, Winslow SG (1992) Liveweight gain and wool growth in sheep fed rations containing virginiamycin. Australian Journal of Experimental Agriculture 32, 1037–1043.
| Liveweight gain and wool growth in sheep fed rations containing virginiamycin.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK3sXlsF2jurs%3D&md5=3edc1cb88da2756aa426f225695a4563CAS |
Newbold CJ, de la Fuente G, Belanche A, Ramos-Morales E, McEwan NR (2015) The role of ciliate protozoa in the rumen. Frontiers in Microbiology 6, 1313
| The role of ciliate protozoa in the rumen.Crossref | GoogleScholarGoogle Scholar |
Nolan JV, Hegarty J, Godwin IR, Hegarty R (2010) Effects of dietary nitrate on fermentation, methane production and digesta kinetics in sheep. Animal Production Science 50, 801–806.
| Effects of dietary nitrate on fermentation, methane production and digesta kinetics in sheep.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3cXhtVyrtbzP&md5=994d6da1a397e4fe08d9202d1e74798bCAS |
O’Toole GA, Wong GC (2016) Sensational biofilms: surface sensing in bacteria. Current Opinion in Microbiology 30, 139–146.
| Sensational biofilms: surface sensing in bacteria.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC28XivVKhtrY%3D&md5=7a271e6725e5607d458ed4b2ae8ae4eaCAS |
Padmanabha J, Gregg K, Ford M, Prideaux C, McSweeney CS (2004) Protection of cattle from fluoroacetate poisoning by genetically modified ruminal bacteria. Animal Production in Australia 25, 293
Pan J, Suzuki K, Tanaka K, Okubo M (2000) Diurnal changes in the distribution of ruminal bacteria attached to feed particles in sheep fed hay once daily. Asian-Australasian Journal of Animal Sciences 13, 1708–1716.
| Diurnal changes in the distribution of ruminal bacteria attached to feed particles in sheep fed hay once daily.Crossref | GoogleScholarGoogle Scholar |
Panjaitan T, Fauzan M, Dahlanuddin , Halliday MJ, Shelton M (2014) Growth of Bali bulls fattened with Leucaena leucocephala in Sumbawa, eastern Indonesia. Tropical Grasslands-Forrajes Tropicales 2, 116–118.
| Growth of Bali bulls fattened with Leucaena leucocephala in Sumbawa, eastern Indonesia.Crossref | GoogleScholarGoogle Scholar |
Parkhill J, Wren BW, Mungall K, Ketley JM, Churcher C, Basham D, Chillingworth T, Davies RM, Feltwell T, Holroyd S, Jagels K, Karlyshev AV, Moule S, Pallen MJ, Penn CW, Quail MA, Rajandream MA, Rutherford KM, van Vliet AH, Whitehead S, Barrell BG (2000) The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences. Nature 403, 665–668.
| The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXht1yjtbs%3D&md5=3a241c607ebf7a228739da21d8b40b0aCAS |
Patra AK, Yu Z (2014) Combinations of nitrate, saponin, and sulfate additively reduce methane production by rumen cultures in vitro while not adversely affecting feed digestion, fermentation or microbial communities. Bioresource Technology 155, 129–135.
| Combinations of nitrate, saponin, and sulfate additively reduce methane production by rumen cultures in vitro while not adversely affecting feed digestion, fermentation or microbial communities.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC2cXmslWqtbY%3D&md5=b8e097b54826353cc83839c278f49883CAS |
Phanthavong V, Viengsakoun N, Sangkhom I, Preston TR (2015) Effect of biochar and leaves from sweet or bitter cassava on gas and methane production in an in vitro rumen incubation using cassava root pulp as source of energy. Livestock Research for Rural Development 27, Article #72
Phillips TD (1999) Dietary clay in the chemoprevention of aflatotoxin-induced disease. Toxicological Sciences 52, 118–126.
| Dietary clay in the chemoprevention of aflatotoxin-induced disease.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXhtFyqsw%3D%3D&md5=e06eafed043de3bb1ba2a4f37d26be48CAS |
Preston TR, Leng RA (1987) ‘Matching ruminant production systems with available resources in the tropics and subtropics.’ (Penambul Books: Armidale, NSW)
Provenza FD, Browns JE, Umess PJ, Malechek JC, Butcher JE (1983) Biological manipulation of blackbrush by goat browsing. Journal of Range Management 36, 513–518.
| Biological manipulation of blackbrush by goat browsing.Crossref | GoogleScholarGoogle Scholar |
Provenza FD, Meuret M, Gregorini P (2015) Our landscapes, our livestock, ourselves: restoring broken linkages among plants, herbivores, and humans with diets that nourish and satiate. Appetite 95, 500–519.
| Our landscapes, our livestock, ourselves: restoring broken linkages among plants, herbivores, and humans with diets that nourish and satiate.Crossref | GoogleScholarGoogle Scholar |
Rendueles O, Ghigo JM (2015) Mechanisms of competition in biofilm communities. Microbiology Spectrum 3,
| Mechanisms of competition in biofilm communities.Crossref | GoogleScholarGoogle Scholar |
Smith GS (1986) Gastrointestinal toxifications and detoxifications in ruminants in relation to resource management In ‘Gastrointestinal toxicology’. (Eds K Rozman, O Hanninen) pp. 514–542. (Elsevier Science: Amsterdam)
St-Pierre B, Wright AD (2012) Molecular analysis of methanogenic archaea in the forestomach of the alpaca (Vicugna pacos). BMC Microbiology 12, 1
| Molecular analysis of methanogenic archaea in the forestomach of the alpaca (Vicugna pacos).Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38Xkslant7s%3D&md5=f0d10ab59bc824685c8896849f53234aCAS |
Stams AJ, Plugge CM (2009) Electron transfer in syntrophic communities of anaerobic bacteria and archaea. Nature Reviews. Microbiology 7, 568–577.
| Electron transfer in syntrophic communities of anaerobic bacteria and archaea.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXos1Wrsb0%3D&md5=f326c0a5f37600b7fd994838d62c5945CAS |
Stewart PS, Franklin MJ (2008) Physiological heterogeneity in biofilms. Nature Reviews. Microbiology 6, 199–210.
| Physiological heterogeneity in biofilms.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1cXhvFCgt7c%3D&md5=08b6e8bdb9dfb0efb92cbb5ac199264eCAS |
Stoodley P, Lewandowski Z, Boyle JD, Lappin-Scott HM (1999) Structural deformation of bacterial biofilms caused by short-term fluctuations in fluid shear: an in situ investigation of biofilm rheology. Biotechnology and Bioengineering 65, 83–92.
| Structural deformation of bacterial biofilms caused by short-term fluctuations in fluid shear: an in situ investigation of biofilm rheology.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK1MXls1Sqsbs%3D&md5=a125bc4ef28e3a4d87c6a77fcf9e96e8CAS |
Sutherland I (2001) Biofilm exopolysaccharides: a strong and sticky framework. Microbiology 147, 3–9.
| Biofilm exopolysaccharides: a strong and sticky framework.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3MXhtlWntbk%3D&md5=6937ee0fa01106c777f700d1a79a2937CAS |
Tailford LE, Crost EH, Kavanaugh D, Juge N (2015) Mucin glycan foraging in the human gut microbiome. Frontiers in Genetics 6, 81
| Mucin glycan foraging in the human gut microbiome.Crossref | GoogleScholarGoogle Scholar |
Upadhaya SD, Park MA, Ha JK (2010) Mycotoxins and their biotransformation in the rumen. A review. Asian-Australasian Journal of Animal Sciences 23, 1250–1260.
| Mycotoxins and their biotransformation in the rumen. A review.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3cXhsVequrzN&md5=0b577202e6ff4dd971dbd9778498e8ffCAS |
Wang ZW, Chen S (2009) Potential of biofilm-based biofuel production. Applied Microbiology and Biotechnology 83, 1–18.
| Potential of biofilm-based biofuel production.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXkslKltb4%3D&md5=1666fdbd4c35c4b8bda28cf998ecac1dCAS |
Wassenaar TM, Newell DG (2006) The genus Campylobacter. Prokaryotes 7, 119–138.
Watnick P, Kolter R (2000) Biofilm, city of microbes. Journal of Bacteriology 182, 2675–2679.
| Biofilm, city of microbes.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXivFKqsro%3D&md5=b375b387ff2a679f8b8aaa239582d45aCAS |
Weimer PJ, Russell JB, Muck RE (2009) Lessons from the cow: what the ruminant animal can teach us about consolidated bioprocessing of cellulosic biomass. Bioresource Technology 100, 5323–5331.
| Lessons from the cow: what the ruminant animal can teach us about consolidated bioprocessing of cellulosic biomass.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXoslGgsrY%3D&md5=46956d043609fd37a4f4cd1a6410d93aCAS |
Whitlow LW and Hagler WM (2017) Mould and mycotoxin issues in dairy cattle: effects, prevention and treatment. Extension Article, North Carolina University. Available at http://articles.extension.org/pages/11768/mold-and-mycotoxin-issues-in-dairy-cattle:-effects-prevention-and-treatment [Verified 15 August 2017]
Williams AG, Coleman GS (1992) ‘The rumen protozoa.’ (Springer-Verlag: New York)
Wimpenny J (1996) Ecological determinants of biofilm formation. Biofouling 10, 43–63.
| Ecological determinants of biofilm formation.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK2sXitVOiu7c%3D&md5=a2539d098ade25db5ebbc350b46717a8CAS |
Wingender J, Neu, TE, Flemming H-C (1999) What are extracellular substances. In ‘Microbial extracellular polymeric substances. Characterization, structure and function’. (Eds J Wingender, TR Neu, H-C Flemming) (Springer-Verlag: Berlin)
Zebeli Q, Aschenbach JR, Tafaj M, Boguhn J, Ametaj BN, Drochner W (2012) Invited review: role of physically effective fiber and estimation of dietary fiber adequacy in high-producing dairy cattle. Journal of Dairy Science 95, 1041–1056.
| Invited review: role of physically effective fiber and estimation of dietary fiber adequacy in high-producing dairy cattle.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XjtFWmsrs%3D&md5=f2cbf5c841cd5a80f2eb820bc449a27dCAS |
Zhao L, Meng Q, Ren L, Liu W, Zhang X, Huo Y, Zhou Z (2015) Effects of nitrate addition on rumen fermentation, bacterial biodiversity and abundance. Asian-Australasian Journal of Animal Sciences 28, 1433–1441.
| Effects of nitrate addition on rumen fermentation, bacterial biodiversity and abundance.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC28XpvVeiu78%3D&md5=e28605b815004c75dc48dd8c3d5444f9CAS |
Zhou Z, Yu Z, Meng Q (2012) Effects of nitrate on methane production, fermentation, and microbial populations in in vitro ruminal cultures. Bioresource Technology 103, 173–179.
| Effects of nitrate on methane production, fermentation, and microbial populations in in vitro ruminal cultures.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3MXhsFSqtrvM&md5=9748c3f9a78404b8b535d694139c889aCAS |