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Australian Mammalogy Australian Mammalogy Society
Journal of the Australian Mammal Society
RESEARCH ARTICLE

New populations of the black-flanked rock-wallaby (Petrogale lateralis) from the Little Sandy Desert and Murchison, Western Australia

J. M. Turpin A D , N. E. White B , J. A. Dunlop C and M. J. Bamford A
+ Author Affiliations
- Author Affiliations

A Bamford Consulting Ecologists, Kingsley, WA 6026, Australia.

B Trace and Environmental DNA Laboratory, Australian Wildlife Forensic Services, Curtin University, Bentley, WA 6102, Australia.

C Department of Biodiversity, Conservation and Attractions, Locked Bag 104, Bentley Delivery Centre, WA 6983, Australia.

D Corresponding author. Email: jeff.m.turpin@gmail.com

Australian Mammalogy 40(2) 234-242 https://doi.org/10.1071/AM14043
Submitted: 28 December 2014  Accepted: 22 September 2017   Published: 8 February 2018

Abstract

During two independent fauna surveys, rock-wallaby (Petrogale) scats were recorded from caves located outside the current known Petrogale distribution. Scats collected from Desert Queen Baths (Little Sandy Desert, Western Australia, 2012), and the Barr Smith Range (Murchison, Western Australia, 2015) were genetically analysed and a follow-up motion camera survey confirmed an extant rock-wallaby population at Desert Queen Baths. The combination of sampling techniques overcame the detection difficulties associated with rare and cryptic taxa, and together were important in establishing the presence of Petrogale lateralis from regions where the species has been poorly documented. At both locations, P. lateralis scats were recorded from deep caves situated close to permanent water, reflecting the species’ physiological constraints in the arid zone. These records represent significant range extensions of a highly threatened macropod.


References

Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990). Basic local alignment search tool. Journal of Molecular Biology 215, 403–410.
Basic local alignment search tool.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK3MXitVGmsA%3D%3D&md5=13a82bb8ca96783568370b2d59c2fe9dCAS |

Barja, I., Miguel, F. J., and Bárcena, F. (2005). Faecal marking behaviour of Iberian wolf in different zones of their territory. Folia Zoologica 54, 21–29.

Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., and Wheeler, D. L. (2006). GenBank. Nucleic Acids Research 34, D16–D20.
GenBank.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD28XisFyksg%3D%3D&md5=13e1c596a185ecfcaf5621d9a8485ef3CAS |

Bowser, A. K., Diamond, A. W., and Addison, J. A. (2013). From puffins to plankton: a DNA-based analysis of a seabird food chain in the northern Gulf of Maine. PLoS One 8, e83152.
From puffins to plankton: a DNA-based analysis of a seabird food chain in the northern Gulf of Maine.Crossref | GoogleScholarGoogle Scholar |

Boyer, S., Cruickshank, R. H., and Wratten, S. D. (2015). Faeces of generalist predators as ‘biodiversity capsules’: a new tool for biodiversity assessment in remote and inaccessible habitats. Food Webs 3, 1–6.
Faeces of generalist predators as ‘biodiversity capsules’: a new tool for biodiversity assessment in remote and inaccessible habitats.Crossref | GoogleScholarGoogle Scholar |

Bradshaw, S. D., Morris, K. D., and Bradshaw, F. J. (2001). Water and electrolyte homeostasis and kidney function of desert-dwelling marsupial wallabies in Western Australia. Journal of Comparative Physiology 171, 23–32.
Water and electrolyte homeostasis and kidney function of desert-dwelling marsupial wallabies in Western Australia.Crossref | GoogleScholarGoogle Scholar |

Burbidge, A., Woinarski, J., Reed, J., van Weenen, J., Moseby, K. E., and Morris, K. 2008. Petrogale latralis. The IUCN Red List of Threatened Species 2008: e.T16751A6358423. Available at: http://dx.doi.org/10.2305/IUCN.UK.2016-1.RLTS.T16751A21955343.en [accessed 27 February 2016].

Coghlan, M. L., White, N. E., Murray, D. C., Houston, J., Rutherford, W., Bellgard, M. I., Haile, J., and Bunce, M. (2013). Metabarcoding avian diets at airports: implications for birdstrike hazard management planning. Investigative Genetics 4, 27.
Metabarcoding avian diets at airports: implications for birdstrike hazard management planning.Crossref | GoogleScholarGoogle Scholar |

Davison, A., Birks, J. D. S., Brookes, R. C., Braithwaite, T. C., and Messenger, J. E. (2002). On the origin of faeces: morphological versus molecular methods for surveying rare carnivores from their scats. Journal of Zoology 257, 141–143.
On the origin of faeces: morphological versus molecular methods for surveying rare carnivores from their scats.Crossref | GoogleScholarGoogle Scholar |

DEC (2009). Resource condition report for a significant Western Australian wetland: Desert Queens Baths. Department of Environment and Conservation, Perth.

Department of Parks and Wildlife (2017). NatureMap: mapping Western Australia’s biodiversity. Department of Environment and Conservation. Available at http://naturemap.dpaw.wa.gov.au/ [accessed 20 April 2017].

Doody, S., Rhind, D., Castellano, C., and Bass, M. (2012). Rediscovery of the scaly-tailed possum (Wyulda squamicaudata) in the eastern Kimberley. Australian Mammalogy 34, 260–262.
Rediscovery of the scaly-tailed possum (Wyulda squamicaudata) in the eastern Kimberley.Crossref | GoogleScholarGoogle Scholar |

Eldridge, M. D. B., and Close, R. L. (1997). Chromosomes and evolution in rock wallabies, Petrogale (Marsupialia: Macropodidae). Australian Mammalogy 19, 123–135.

Eldridge, M. D. B., and Pearson, D. J. (2008). Black-footed rock-wallaby. In ‘The Mammals of Australia’. 3rd edn. (Eds S. van Dyck and R. Strahan.) pp. 376–380. (Reed New Holland: Sydney.)

Eldridge, M. D. B., King, J. M., Loupis, A. K., Spencer, P., Taylor, A. C., Pope, L. C., and Hall, G. P. (1999). Unprecedented low levels of genetic variation and inbreeding depression in an island population of the black‐footed rock‐wallaby. Conservation Biology 13, 531–541.
Unprecedented low levels of genetic variation and inbreeding depression in an island population of the black‐footed rock‐wallaby.Crossref | GoogleScholarGoogle Scholar |

Finlayson, H. H. (1961). On central Australian mammals. Part IV. The distribution and status of central Australian species. Records of the South Australian Museum 14, 141–191.

Haouchar, D., Haile, J., Spencer, P. B. S., and Bunce, M. (2013). The identity of the Depuch Island rock-wallaby revealed through ancient DNA. Australian Mammalogy 35, 101–106.
The identity of the Depuch Island rock-wallaby revealed through ancient DNA.Crossref | GoogleScholarGoogle Scholar |

Jarman, P. J., and Capararo, S. M. (1997). Use of rock-wallaby faecal pellets for detecting and monitoring populations and examining habitat use. Australian Mammalogy 19, 257–264.

Jones-Lennon, M., Taggart, D. A., Temple-Smith, P. D., and Eldridge, M. D. B. (2011). The impact of isolation and bottlenecks on genetic diversity in the Pearson Island population of the black-footed rock-wallaby (Petrogale lateralis pearsoni; Marsupialia: Macropodidae). Australian Mammalogy 33, 152–161.
The impact of isolation and bottlenecks on genetic diversity in the Pearson Island population of the black-footed rock-wallaby (Petrogale lateralis pearsoni; Marsupialia: Macropodidae).Crossref | GoogleScholarGoogle Scholar |

King, J. M., and Bradshaw, S. D. (2008). Comparative water metabolism of Barrow Island macropod marsupials: hormonal versus behavioural-dependent mechanisms of body water conservation. General and Comparative Endocrinology 155, 378–385.
Comparative water metabolism of Barrow Island macropod marsupials: hormonal versus behavioural-dependent mechanisms of body water conservation.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1cXislCktg%3D%3D&md5=7b04ff7b244c8edf65e67f79b37961eaCAS |

MacKenzie, D. I., Nichols, J., Sutton, N., Kawanishi, K., and Bailey, L. L. (2005). Improving inferences in population studies of rare species that are detected imperfectly. Ecology 86, 1101–1113.
Improving inferences in population studies of rare species that are detected imperfectly.Crossref | GoogleScholarGoogle Scholar |

Martin, T. G., Nally, S., Burbidge, A. A., Arnall, S., Garnett, S. T., Hayward, M. W., Lumsden, L. F., Menkhorst, P., McDonald-Madden, E., and Possingham, H. P. (2012). Acting fast helps avoid extinction. Conservation Letters 5, 274–280.
Acting fast helps avoid extinction.Crossref | GoogleScholarGoogle Scholar |

Maxwell, S., Burbidge, A.A., and Morris K. (1996). The 1996 Action Plan for Australian Marsupials and Monotremes. Wildlife Australia, Environment Australia. Available at: http://www.environment.gov.au/resource/action-plan-australian-marsupials-and-monotremes (accessed 23 November 2017).

Murray, D. C., Bunce, M., Cannell, B. L., Oliver, R., Houston, J., White, N. E., and Haile, J. (2011). DNA-based faecal dietary analysis: a comparison of qPCR and high throughput sequencing approaches. PLoS One 6, e25776.
DNA-based faecal dietary analysis: a comparison of qPCR and high throughput sequencing approaches.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3MXhtlOltLjI&md5=bd79a021e449c7babc15b741db3f0fe3CAS |

Murray, D. C., Pearson, S. G., Fullagar, R., Chase, B. M., Houston, J., Atchison, J., White, N. E., Bellgard, M. I., Clarke, E., and Macphail, M. (2012). High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens. Quaternary Science Reviews 58, 135–145.
High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens.Crossref | GoogleScholarGoogle Scholar |

Murray, D. C., Coghlan, M. L., and Bunce, M. (2015). From benchtop to desktop: important considerations when designing amplicon sequencing workflows. PLoS One 10, e0124671.
From benchtop to desktop: important considerations when designing amplicon sequencing workflows.Crossref | GoogleScholarGoogle Scholar |

Pearson, D. J. (1992). Past and present distribution and abundance of the black-footed wallaby in the Warburton region of Western Australia. Wildlife Research 19, 605–622.
Past and present distribution and abundance of the black-footed wallaby in the Warburton region of Western Australia.Crossref | GoogleScholarGoogle Scholar |

Pearson, D. J. (2012). Recovery plan for five species of rock-wallabies: black-flanked rock-wallaby (Petrogale lateralis), Rothschild’s rock-wallaby (Petrogale rothschildi), short-eared rock-wallaby (Petrogale brachyotis), monjon (Petrogale burbidgei) and nabarlek (Petrogale concinna). Department of Environment and Conservation, Perth.

Pearson, D. J., and Kinnear, J. E. (1997). A review of the distribution, status and conservation of rock-wallabies in Western Australia. Australian Mammalogy 19, 137–152.

Pentland, C. (2014). Behavioural ecology of the black-flanked rock-wallaby (Petrogale lateralis lateralis); refuge importance in a variable environment. Ph.D. Thesis, Edith Cowan University, Perth.

Piggott, M. P., and Taylor, A. C. (2003). Remote collection of animal DNA and its applications in conservation management and understanding the population biology of rare and cryptic species. Wildlife Research 30, 1–13.
Remote collection of animal DNA and its applications in conservation management and understanding the population biology of rare and cryptic species.Crossref | GoogleScholarGoogle Scholar |

Pompanon, F., Deagle, B. E., Symondson, W. O. C., Brown, D. S., Jarman, S. N., and Taberlet, P. (2012). Who is eating what: diet assessment using next generation sequencing. Molecular Ecology 21, 1931–1950.
Who is eating what: diet assessment using next generation sequencing.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XptVGktr4%3D&md5=c0ad0ce8ef54af9d9d09d28b52fca6deCAS |

Potter, S., Cooper, S. J., Metcalfe, C. J., Taggart, D. A., and Eldridge, M. D. (2012). Phylogenetic relationships of rock-wallabies, Petrogale (Marsupialia: Macropodidae) and their biogeographic history within Australia. Molecular Phylogenetics and Evolution 62, 640–652.
Phylogenetic relationships of rock-wallabies, Petrogale (Marsupialia: Macropodidae) and their biogeographic history within Australia.Crossref | GoogleScholarGoogle Scholar |

Sharman, G. B., Maynes, G. M., Eldridge, M. D. B., and Close, R. (2004). Rothschild’s rock-wallaby Petrogale rothschildi. In ‘The Mammals of Australia’. (Ed. R. Strahan.) pp. 388–389. (Reed New Holland: Sydney.)

Taylor, P. G. (1996). Reproducibility of ancient DNA sequences from extinct Pleistocene fauna. Molecular Biology and Evolution 13, 283–285.
Reproducibility of ancient DNA sequences from extinct Pleistocene fauna.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK28XhtVyksr4%3D&md5=5e5b1985f5bf3af43cde47f82f047ff5CAS |

Triggs, B. (2004). ‘Tracks, Scats and other Traces: A Field Guide to Australian Mammals.’ (Oxford University Press: Melbourne.)

Turpin, J. M. (2015). North Kimberley mammals – on the fringe of the high-rainfall zone. Australian Mammalogy 37, 86–91.
North Kimberley mammals – on the fringe of the high-rainfall zone.Crossref | GoogleScholarGoogle Scholar |

Turpin, J. M., and Bamford, M. J. (2015). A new population of the northern quoll (Dasyurus hallucatus) on the edge of the Little Sandy Desert, Western Australia. Australian Mammalogy 37, 132–145.
A new population of the northern quoll (Dasyurus hallucatus) on the edge of the Little Sandy Desert, Western Australia.Crossref | GoogleScholarGoogle Scholar |

Vacher, C., Tamaddoni-Nezhad, A., Kamenova, S., Peyrard, N., Moalic, Y., Sabbadin, R., Schwaller, L., Chiquet, J., Smith, M. A., Vallance, J., Fievet, V., Jakuschkin, B., and Bohan, D. A. (2016). Learning ecological networks from next-generation sequence data. Advances in Ecological Research , .
Learning ecological networks from next-generation sequence data.Crossref | GoogleScholarGoogle Scholar |

Vine, S. J., Crowther, M. S., Lapidge, S. J., Dickman, C. R., Mooney, N., Piggott, M. P., and English, A. W. (2009). Comparison of methods to detect rare and cryptic species: a case study using the red fox (Vulpes vulpes). Wildlife Research 36, 436–446.
Comparison of methods to detect rare and cryptic species: a case study using the red fox (Vulpes vulpes).Crossref | GoogleScholarGoogle Scholar |

Wadley, J. M., Austin, J., and Fordham, D. A. (2013). Rapid species identification of eight sympatric northern Australian macropods from faecal-pellet DNA. Wildlife Research 40, 241–249.
Rapid species identification of eight sympatric northern Australian macropods from faecal-pellet DNA.Crossref | GoogleScholarGoogle Scholar |

Ward, M. J., Urban, R., Read, J., Dent, A., Clarke, A., and Partridge, T. (2011). Status of warru Petrogale lateralis MacDonnell Ranges race in the Anangu Pitjantjatjara Yankunytjatjara Lands of South Australia. 1. Distribution and declines. Australian Mammalogy 33, 135–141.
Status of warru Petrogale lateralis MacDonnell Ranges race in the Anangu Pitjantjatjara Yankunytjatjara Lands of South Australia. 1. Distribution and declines.Crossref | GoogleScholarGoogle Scholar |

Woinarski, J. C. Z., Burbidge, A., and Harrison, P. (2014). ‘The Action Plan for Australian Mammals 2012.’ (CSIRO Publishing: Melbourne.)

Zeale, M. R. K., Butlin, R. K., Barker, G. L. A., Lees, D. C., and Jones, G. (2011). Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces. Molecular Ecology Resources 11, 236–244.
Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3MXks1Kiurs%3D&md5=759deb4cbc3a9ba830a523aa3d6dc72dCAS |