Identification of a remnant population of the black-flanked rock-wallaby (Petrogale lateralis lateralis) in Kalbarri National Park, Western Australia, and implications for its management
David J. Pearson A , Linda E. Neaves B C , Mike Paxman D , Anthony Desmond E , Juanita Renwick A , Merril Halley F , Nicole Willers G and Mark D. B. Eldridge B H
+ Author Affiliations
- Author Affiliations
A Department of Biodiversity, Conservation and Attractions, Locked Bag 104, Bentley Delivery Centre, WA 6983, Australia.
B Australian Museum Research Institute, Australian Museum, 1 William Street, Sydney, NSW 2010, Australia.
C Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh EH3 5 LR, UK.
D Kalbarri National Park, PO Box 37, Kalbarri, WA 6536, Australia.
E Department of Biodiversity, Conservation and Attractions (Midwest Region), PO Box 72, Geraldton, WA 6531, Australia.
F WWF–Australia, PO Box 4010, Wembley, WA 6913, Australia.
G Department of Biodiversity, Conservation and Attractions (Swan Region), cnr Australia II Drive and Hackett Drive, Crawley, WA 6009, Australia.
H Corresponding author. Email: mark.eldridge@austmus.gov.au
Australian Mammalogy 41(2) 196-204 https://doi.org/10.1071/AM18021
Submitted: 12 July 2018 Accepted: 11 October 2018 Published: 5 November 2018
Abstract
Black-flanked rock-wallabies (Petrogale lateralis lateralis) were thought to be locally extinct in Kalbarri National Park, Western Australia, until 2015 when a pair were photographed in the Murchison River gorge. Subsequent searches failed to locate any other populations and, in combination with previous surveys, suggest that these animals were the sole survivors of a formerly abundant population. Efforts to capture the rock-wallabies to obtain tissue samples and ascertain their genetic affinities were unsuccessful. However, fresh faecal material was collected and a ~600-bp fragment of DNA sequence data was obtained from a mitochondrial DNA gene. The Kalbarri rock-wallabies were found to be genetically distinct from all other sampled populations of P. l. lateralis. They were genetically most similar to rock-wallabies in the Calvert Range, 950 km to the north-east in the Little Sandy Desert. Nearer populations in Cape Range (600 km north) and the Western Australian Wheatbelt (500 km south-east) were less closely related. Following evaluation of a variety of factors, including population size, genetics, demography, ecology, environment and logistics, a decision was made to supplement the Kalbarri National Park population with females sourced from the Western Australian Wheatbelt. In May 2016 three females were released at the same site as the Kalbarri pair to try to ensure the survival of the population whilst still preserving unique Kalbarri alleles.
References
Creese, S., and Hartley, R. (2008). Survey for the black-flanked rock-wallaby (Petrogale lateralis lateralis) in the Murchison Gorge, Kalbarri National Park, May–June 2008. Unpublished report for Back from the Brink. Department of Environment and Conservation, Perth.Eldridge, M. D. B., and Pearson, D. J. (2008). Black-footed rock-wallaby Petrogale lateralis. In ‘The Mammals of Australia’. 3rd edn. (Eds S. Van Dyck, and R. Strahan.) pp. 376–380. (New Holland: Sydney.)
Eldridge, M. D. B., King, J. M., Loupis, A. K., Spencer, P. B. S., Taylor, A. C., Pope, L. C., and Hall, G. P. (1999). Unprecedented low levels of genetic variation and inbreeding depression in an island population of the black-footed rock-wallaby. Conservation Biology 13, 531–541.
| Unprecedented low levels of genetic variation and inbreeding depression in an island population of the black-footed rock-wallaby.Crossref | GoogleScholarGoogle Scholar |
Eldridge, M. D. B., Kinnear, J. E., and Onus, M. L. (2001a). Source population of dispersing rock-wallabies (Petrogale lateralis) identified by assignment tests on multilocus genotypic data. Molecular Ecology 10, 2867–2876.
| Source population of dispersing rock-wallabies (Petrogale lateralis) identified by assignment tests on multilocus genotypic data.Crossref | GoogleScholarGoogle Scholar |
Eldridge, M. D. B., Wilson, A. C., Metcalfe, C. J., Dollin, A. E., Bell, J. N., Johnson, P. M., Johnston, P. G., and Close, R. L. (2001b). Taxonomy of rock-wallabies, Petrogale (Marsupialia: Macropodidae). III. Molecular data confirms the species status of the purple-necked rock-wallaby (Petrogale purpureicollis Le Souef). Australian Journal of Zoology 49, 323–343.
| Taxonomy of rock-wallabies, Petrogale (Marsupialia: Macropodidae). III. Molecular data confirms the species status of the purple-necked rock-wallaby (Petrogale purpureicollis Le Souef).Crossref | GoogleScholarGoogle Scholar |
Eldridge, M. D. B., Piggott, M. P., and Hazlitt, S. L. (2010). Population genetic studies of the Macropodoidea: a review. In ‘Macropods: the Biology of Kangaroos, Wallabies and Rat-kangaroos’. (Eds G. M. Coulson, and M. D. B. Eldridge.) pp. 35–51. (CSIRO Publishing: Melbourne.)
Frankham, R. (2005). Genetics and extinction. Biological Conservation 126, 131–140.
| Genetics and extinction.Crossref | GoogleScholarGoogle Scholar |
Frankham, R. (2015). Genetic rescue of small inbred populations: meta-analysis reveals large and consistent benefits of gene flow. Molecular Ecology 170, 56–63.
Frankham, R. (2016). Genetic rescue benefits persist to at least the F3 generation, based on a meta-analysis. Biological Conservation 195, 33–36.
| Genetic rescue benefits persist to at least the F3 generation, based on a meta-analysis.Crossref | GoogleScholarGoogle Scholar |
Frankham, R., Ballou, J. D., and Briscoe, D. A. (2010). ‘Introduction to Conservation Genetics.’ 2nd edn. (Cambridge University Press: Cambridge.)
Frankham, R., Ballou, J. D., Eldridge, M. D. B., Lacy, R. C., Ralls, K., Dudash, M. R., and Fenster, C. B. (2011). Predicting the probability of outbreeding depression. Conservation Biology 25, 465–475.
| Predicting the probability of outbreeding depression.Crossref | GoogleScholarGoogle Scholar |
Frankham, G. J., Handasyde, K. A., and Eldridge, M. D. B. (2016). Evolutionary and contemporary responses to habitat fragmentation detected in a mesic zone marsupial, the long-nosed potoroo (Potorous tridactylus) in southeastern Australia. Journal of Biogeography 43, 653–665.
| Evolutionary and contemporary responses to habitat fragmentation detected in a mesic zone marsupial, the long-nosed potoroo (Potorous tridactylus) in southeastern Australia.Crossref | GoogleScholarGoogle Scholar |
Frankham, R., Ballou, J. D., Ralls, K., Eldridge, M. D. B., Dudash, M. R., Fenster, C. B., Lacy, R. C., and Sunnucks, P. (2017). ‘Genetic Management of Fragmented Animal and Plant Populations.’ (Oxford University Press: Oxford.)
Fumagalli, L., Pope, L. C., Taberlet, P., and Moritz, C. (1997). Versatile primers for the amplification of the mitochondrial DNA control region in marsupials. Molecular Ecology 6, 1199–1201.
| Versatile primers for the amplification of the mitochondrial DNA control region in marsupials.Crossref | GoogleScholarGoogle Scholar |
Haouchar, D., Haile, J., Spencer, P. B. S., and Bunce, M. (2013). The identity of the Depuch Island rock-wallaby revealed through ancient DNA. Australian Mammalogy 35, 101–106.
| The identity of the Depuch Island rock-wallaby revealed through ancient DNA.Crossref | GoogleScholarGoogle Scholar |
Hazlitt, S. L., Goldizen, A. W., Nicholls, J. A., and Eldridge, M. D. B. (2014). Three divergent lineages within an Australian marsupial (Petrogale penicillata) suggest multiple major refugia for mesic taxa in southeast Australia. Ecology and Evolution 4, 1102–1116.
| Three divergent lineages within an Australian marsupial (Petrogale penicillata) suggest multiple major refugia for mesic taxa in southeast Australia.Crossref | GoogleScholarGoogle Scholar |
King, J. M., and Bradshaw, S. D. (2008). Comparative water metabolism of Barrow Island macropodid marsupials: hormonal versus behavioural-dependent mechanisms of body water conservation. General and Comparative Endocrinology 155, 378–385.
| Comparative water metabolism of Barrow Island macropodid marsupials: hormonal versus behavioural-dependent mechanisms of body water conservation.Crossref | GoogleScholarGoogle Scholar |
Kinnear, J. E., Onus, M. L., and Bromilow, R. N. (1988). Fox control and rock-wallaby population dynamics. Australian Wildlife Research 15, 435–450.
| Fox control and rock-wallaby population dynamics.Crossref | GoogleScholarGoogle Scholar |
Kinnear, J. E., Krebs, C. J., Pentland, C., Orell, P., Holmes, C., and Karvinen, R. (2010). Predator-baiting experiments for the conservation of rock-wallabies in Western Australia: a 25-year review with recent advances. Wildlife Research 37, 57–67.
| Predator-baiting experiments for the conservation of rock-wallabies in Western Australia: a 25-year review with recent advances.Crossref | GoogleScholarGoogle Scholar |
Mory, A. J., and Hocking, R. M. (2008). ‘Geology of the Kalbarri and Mingenew Areas: A Field Guide.’ (Department of Industry and Resource: Perth.)
Neaves, L. E., Zenger, K. R., Prince, R. I. T., and Eldridge, M. D. B. (2012). Impact of Pleistocene aridity oscillations on the population history of a widespread, vagile Australian mammal, Macropus fuliginosus. Journal of Biogeography 39, 1545–1563.
| Impact of Pleistocene aridity oscillations on the population history of a widespread, vagile Australian mammal, Macropus fuliginosus.Crossref | GoogleScholarGoogle Scholar |
Pearson, D. J. (2012). Recovery plan for five species of rock-wallabies: black-flanked rock-wallaby (Petrogale lateralis), Rothschild’s rock-wallaby (Petrogale rothschildi), short-eared rock wallaby (Petrogale brachyotis), monjon (Petrogale burbidgei) and nabarlek (Petrogale concinna). Department of Environment and Conservation, Perth.
Pearson, D. J., and Kinnear, J. E. (1997). A review of the distribution, status and conservation of rock-wallabies in Western Australia. Australian Mammalogy 19, 137–152.
Pearson, D. J., Desmond, A., Moore, N., and Halley, M. (2016). Translocation proposal: reintroduction of the black-flanked rock-wallaby (Peterogale lateralis lateralis) from WA Wheatbelt populations to Kalbarri National Park. Unpublished report, Department of Parks and Wildlife, Perth.
Pentland, C. (2014). Behavioural ecology of the black-flanked rock-wallaby (Petrogale lateralis lateralis): refuge importance in a variable environment. Ph.D. Thesis, Edith Cowan University, Perth.
Posada, D. (2008). jModelTest: phylogenetic model averaging. Molecular Biology and Evolution 25, 1253–1256.
| jModelTest: phylogenetic model averaging.Crossref | GoogleScholarGoogle Scholar |
Potter, S., Eldridge, M. D. B., Cooper, S. J. B., Paplinska, J. Z., and Taggart, D. A. (2012a). Habitat connectivity, more than species’ biology, influences genetic differentiation in a habitat specialist, the short-eared rock-wallaby (Petrogale brachyotis). Conservation Genetics 13, 937–952.
| Habitat connectivity, more than species’ biology, influences genetic differentiation in a habitat specialist, the short-eared rock-wallaby (Petrogale brachyotis).Crossref | GoogleScholarGoogle Scholar |
Potter, S., Eldridge, M. D. B., Taggart, D. A., and Cooper, S. J. B. (2012b). Multiple biogeographic barriers identified across the monsoon tropics of northern Australia: phylogeographic analysis of the brachyotis group of rock-wallabies. Molecular Ecology 21, 2254–2269.
| Multiple biogeographic barriers identified across the monsoon tropics of northern Australia: phylogeographic analysis of the brachyotis group of rock-wallabies.Crossref | GoogleScholarGoogle Scholar |
R Core Team (2011). R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. Available at: www.R-project.com
Rambaut, A., and Drummond, A. J. (2007) Tracer v1.4. Available at: http://beast.bio.ed.ac.uk/Trace
Ronquist, F., and Huelsenbeck, J. P. (2003). MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572–1574.
| MRBAYES 3: Bayesian phylogenetic inference under mixed models.Crossref | GoogleScholarGoogle Scholar |
Schliep, K. P. (2011). phangorn: phylogenetic analysis in R. Bioinformatics 27, 592–593.
| phangorn: phylogenetic analysis in R.Crossref | GoogleScholarGoogle Scholar |
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28, 2731–2739.
| MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.Crossref | GoogleScholarGoogle Scholar |
Telfer, W. R., and Eldridge, M. D. B. (2010). High levels of mitochondrial DNA divergence within short-eared rock-wallaby (Petrogale brachyotis) populations in northern Australia. Australian Journal of Zoology 58, 104–112.
| High levels of mitochondrial DNA divergence within short-eared rock-wallaby (Petrogale brachyotis) populations in northern Australia.Crossref | GoogleScholarGoogle Scholar |
Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997). The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25, 4876–4882.
| The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.Crossref | GoogleScholarGoogle Scholar |
Turpin, J. M., White, N. E., Dunlop, J. A., and Bamford, M. J. (2018). New populations of the black-flanked rock-wallaby (Petrogale lateralis) from the Little Sandy Desert and Murchison, Western Australia. Australian Mammalogy 40, 234–242.
| New populations of the black-flanked rock-wallaby (Petrogale lateralis) from the Little Sandy Desert and Murchison, Western Australia.Crossref | GoogleScholarGoogle Scholar |
Willers, N., Martin, G. B., Matson, P., Mawson, P. R., Morris, K., and Bencini, R. (2015). Finding the balance: fertility control for the management of fragmented populations of a threatened rock-wallaby species. Animals (Basel) 5, 1329–1344.
| Finding the balance: fertility control for the management of fragmented populations of a threatened rock-wallaby species.Crossref | GoogleScholarGoogle Scholar |
