Historical ecology of semi-enclosed coastal embayments: tools and techniques for discovering ecological events of the recent past

References

Airoldi, L, Balata, D, and Beck, MW (2008). The gray zone: relationships between habitat loss and marine diversity and their applications in conservation. Journal of Experimental Marine Biology and Ecology 366, 8–15.
| The gray zone: relationships between habitat loss and marine diversity and their applications in conservation.Crossref | GoogleScholarGoogle Scholar |

Al-Abdulrazzak, D, Naidoo, R, Palomares, MLD, and Pauly, D (2012). Gaining perspective on what we’ve lost: the reliability of encoded anecdotes in historical ecology. PLoS ONE 7, e43386.
| Gaining perspective on what we’ve lost: the reliability of encoded anecdotes in historical ecology.Crossref | GoogleScholarGoogle Scholar |

Alexander, KE, Leavenworth, WB, Cournane, J, Cooper, AB, Claesson, S, Brennan, S, Smith, G, Rains, L, Magness, K, Dunn, R, Law, TK, Gee, R, Bolster, WJ, and Rosenberg, AA (2009). Gulf of Maine cod in 1861: historical analysis of fishery logbooks, with ecosystem implications. Fish and Fisheries 10, 428–449.
| Gulf of Maine cod in 1861: historical analysis of fishery logbooks, with ecosystem implications.Crossref | GoogleScholarGoogle Scholar |

Allen JI, Anderson D, Burford M, Dyhrman S, Flynn K, Glibert PM, Granéli E, Heil C, Sellner K, Smayda T, Zhou M (2006) Global ecology & oceanography of harmful algal blooms: HABs in eutrophic systems. (Ed. PM Glibert) (SCOR & IOC) Available at https://www.whoi.edu/cms/files/GEOHAB_eutrophic_23003_23056.pdf

Alleway, HK, and Connell, SD (2015). Loss of an ecological baseline through the eradication of oyster reefs from coastal ecosystems and human memory. Conservation Biology 29, 795–804.
| Loss of an ecological baseline through the eradication of oyster reefs from coastal ecosystems and human memory.Crossref | GoogleScholarGoogle Scholar |

Alleway, HK, Connell, SD, Ward, TM, and Gillanders, BM (2014). Historical changes in mean trophic level of southern Australian fisheries. Marine and Freshwater Research 65, 884–893.
| Historical changes in mean trophic level of southern Australian fisheries.Crossref | GoogleScholarGoogle Scholar |

Ames, EP (2004). Atlantic cod stock structure in the Gulf of Maine. Fisheries 29, 10–28.
| Atlantic cod stock structure in the Gulf of Maine.Crossref | GoogleScholarGoogle Scholar |

Anderson, DM, Keafer, BA, Kleindinst, JL, McGillicuddy, DJ, Martin, JL, Norton, K, Pilskaln, CH, Smith, JL, Sherwood, CR, and Butman, B (2014). Alexandrium fundyense cysts in the Gulf of Maine: long-term time series of abundance and distribution, and linkages to past and future blooms. Deep-Sea Research – II. Topical Studies in Oceanography 103, 6–26.
| Alexandrium fundyense cysts in the Gulf of Maine: long-term time series of abundance and distribution, and linkages to past and future blooms.Crossref | GoogleScholarGoogle Scholar |

Arias-Ortiz, A, Serrano, O, Masqué, P, Lavery, PS, Mueller, U, Kendrick, GA, Rozaimi, M, Esteban, A, Fourqurean, JW, Marbà, N, Mateo, MA, Murray, K, Rule, MJ, and Duarte, CM (2018). A marine heatwave drives massive losses from the world’s largest seagrass carbon stocks. Nature Climate Change 8, 338–344.
| A marine heatwave drives massive losses from the world’s largest seagrass carbon stocks.Crossref | GoogleScholarGoogle Scholar |

Auster, PJ, Joy, K, and Valentine, PC (2001). Fish species and community distributions as proxies for seafloor habitat distributions: the Stellwagen Bank National Marine Sanctuary example (Northwest Atlantic, Gulf of Maine). Environmental Biology of Fishes 60, 331–346.
| Fish species and community distributions as proxies for seafloor habitat distributions: the Stellwagen Bank National Marine Sanctuary example (Northwest Atlantic, Gulf of Maine).Crossref | GoogleScholarGoogle Scholar |

Bak CV (2020) ‘Threats to North Atlantic right whales and killer whales.’ (Nova Snova: New York, NY, USA). Available at https://go.exlibris.link/KPhkCLC0

Baumgartner, TR, Soutar, A, and Ferreira Bartrina, V (1992). Reconstruction of the history of Pacific sardine and northern anchovy populations over the past 2 millennia from sediments of the Santa-Barbara Basin, California. California Cooperative Oceanic Fisheries Investigations Reports 33, 24–40.

Bejder, M, Johnston, DW, Smith, J, Friedlaender, A, and Bejder, L (2016). Embracing conservation success of recovering humpback whale populations: evaluating the case for downlisting their conservation status in Australia. Marine Policy 66, 137–141.
| Embracing conservation success of recovering humpback whale populations: evaluating the case for downlisting their conservation status in Australia.Crossref | GoogleScholarGoogle Scholar |

Berman, J, Harris, L, Lambert, W, Buttrick, M, and Dufresne, M (1992). Recent invasions of the Gulf of Maine: three contrasting ecological histories. Conservation Biology 6, 435–441.
| Recent invasions of the Gulf of Maine: three contrasting ecological histories.Crossref | GoogleScholarGoogle Scholar |

Bolster, WJ (2008). Putting the ocean in Atlantic history: maritime communities and marine ecology in the Northwest Atlantic, 1500–1800. The American Historical Review 113, 19–47.
| Putting the ocean in Atlantic history: maritime communities and marine ecology in the Northwest Atlantic, 1500–1800.Crossref | GoogleScholarGoogle Scholar |

Bolster WJ (2012) ‘The mortal sea: fishing the Atlantic in the age of sail.’ (Harvard University Press: Cambridge, MA, USA)
| Crossref |

Braganza, K, Gergis, JL, Power, SB, Risbey, JS, and Fowler, AM (2009). A multiproxy index of the El Niño–Southern Oscillation, A.D. 1525–1982. Journal of Geophysical Research: Atmospheres 114, D05106.
| A multiproxy index of the El Niño–Southern Oscillation, A.D. 1525–1982.Crossref | GoogleScholarGoogle Scholar |

Brierley, AS, and Kingsford, MJ (2009). Impacts of climate change on marine organisms and ecosystems. Current Biology 19, R602–R614.
| Impacts of climate change on marine organisms and ecosystems.Crossref | GoogleScholarGoogle Scholar |

Buchsbaum R, Pederson J, Robinson WE (2005) ‘The decline of fisheries resources in New England: evaluating the impact of overfishing, contamination, and habitat degradation.’ (MIT Sea Grant College Program: Cambridge, MA, USA)

Burkepile, DE, and Hay, ME (2006). Herbivore vs. nutrient control of marine primary producers: context-dependent effects. Ecology 87, 3128–3139.
| Herbivore vs. nutrient control of marine primary producers: context-dependent effects.Crossref | GoogleScholarGoogle Scholar |

Christensen J (2008) Shark Bay 1616–1991: the spread of science and the emergence of ecology in a World Heritage Area. PhD thesis, University of Western Australia, Perth, WA, Australia. Available at https://research-repository.uwa.edu.au/en/publications/shark-bay-1616-1991-the-spread-of-science-and-the-emergence-of-ec

Colman, SM, Baucom, PC, Bratton, JF, Cronin, TM, McGeehin, JP, Willard, D, Zimmerman, AR, and Vogt, PR (2002). Radiocarbon dating, chronologic framework, and changes in accumulation rates of holocene estuarine sediments from Chesapeake Bay. Quaternary Research 57, 58–70.
| Radiocarbon dating, chronologic framework, and changes in accumulation rates of holocene estuarine sediments from Chesapeake Bay.Crossref | GoogleScholarGoogle Scholar |

Craig, LA, and Holt, MT (2017). The impact of mechanical refrigeration on market integration: the US egg market, 1890–1911. Explorations in Economic History 66, 85–105.
| The impact of mechanical refrigeration on market integration: the US egg market, 1890–1911.Crossref | GoogleScholarGoogle Scholar |

Cramer, KL, Leonard-Pingel, JS, Rodríguez, F, and Jackson, JBC (2015). Molluscan subfossil assemblages reveal the long-term deterioration of coral reef environments in Caribbean Panama. Marine Pollution Bulletin 96, 176–187.
| Molluscan subfossil assemblages reveal the long-term deterioration of coral reef environments in Caribbean Panama.Crossref | GoogleScholarGoogle Scholar |

Cuttriss, AK, Prince, JB, and Castley, JG (2013). Seagrass communities in southern Moreton Bay, Australia: coverage and fragmentation trends between 1987 and 2005. Aquatic Botany 108, 41–47.
| Seagrass communities in southern Moreton Bay, Australia: coverage and fragmentation trends between 1987 and 2005.Crossref | GoogleScholarGoogle Scholar |

Dai, J, Song, J, Li, X, Yuan, H, Li, N, and Zheng, G (2007). Environmental changes reflected by sedimentary geochemistry in recent hundred years of Jiaozhou Bay, North China. Environmental Pollution 145, 656–667.
| Environmental changes reflected by sedimentary geochemistry in recent hundred years of Jiaozhou Bay, North China.Crossref | GoogleScholarGoogle Scholar |

Debus L (1996) The decline of the European sturgeon Acipenser sturio in the Baltic and North Sea. In ‘Conservation of endangered freshwater fish in Europe’. (Eds A Kirchhofer, D Hefti) pp. 147–156. (Berkhäuser Verlag: Basel, Switzerland)
| Crossref |

deYoung, B, Barange, M, Beaugrand, G, Harris, R, Perry, RI, Scheffer, M, and Werner, F (2008). Regime shifts in marine ecosystems: detection, prediction and management. Trends in Ecology & Evolution 23, 402–409.
| Regime shifts in marine ecosystems: detection, prediction and management.Crossref | GoogleScholarGoogle Scholar |

Diggles, BK (2013). Historical epidemiology indicates water quality decline drives loss of oyster (Saccostrea glomerata) reefs in Moreton Bay, Australia. New Zealand Journal of Marine and Freshwater Research 47, 561–581.
| Historical epidemiology indicates water quality decline drives loss of oyster (Saccostrea glomerata) reefs in Moreton Bay, Australia.Crossref | GoogleScholarGoogle Scholar |

Early-Capistrán, M-M, Sáenz-Arroyo, A, Cardoso-Mohedano, J-G, Garibay-Melo, G, Peckham, SH, and Koch, V (2018). Reconstructing 290 years of a data-poor fishery through ethnographic and archival research: the East Pacific green turtle (Chelonia mydas) in Baja California, Mexico. Fish and Fisheries 19, 57–77.
| Reconstructing 290 years of a data-poor fishery through ethnographic and archival research: the East Pacific green turtle (Chelonia mydas) in Baja California, Mexico.Crossref | GoogleScholarGoogle Scholar |

Enfield, DB, Mestas-Nuñez, AM, and Trimble, PJ (2001). The Atlantic Multidecadal Oscillation and its relation to rainfall and river flows in the continental US. Geophysical Research Letters 28, 2077–2080.
| The Atlantic Multidecadal Oscillation and its relation to rainfall and river flows in the continental US.Crossref | GoogleScholarGoogle Scholar |

Engelhard, GH, Thurstan, RH, MacKenzie, BR, Alleway, HK, Bannister, RCA, Cardinale, M, Clarke, MW, Currie, JC, Fortibuoni, T, Holm, P, Holt, SJ, Mazzoldi, C, Pinnegar, JK, Raicevich, S, Volckaert, FAM, Klein, ES, and Lescrauwaet, A-K (2016). ICES meets marine historical ecology: placing the history of fish and fisheries in current policy context. ICES Journal of Marine Science 73, 1386–1403.
| ICES meets marine historical ecology: placing the history of fish and fisheries in current policy context.Crossref | GoogleScholarGoogle Scholar |

Eriksson, BK, van der Heide, T, van de Koppel, J, Piersma, T, van der Veer, HW, and Olff, H (2010). Major changes in the ecology of the Wadden Sea: human impacts, ecosystem engineering and sediment dynamics. Ecosystems 13, 752–764.
| Major changes in the ecology of the Wadden Sea: human impacts, ecosystem engineering and sediment dynamics.Crossref | GoogleScholarGoogle Scholar |

Erlandson, JM, and Rick, TC (2010). Archaeology meets marine ecology: the antiquity of maritime cultures and human impacts on marine fisheries and ecosystems. Annual Review of Marine Science 2, 231–251.
| Archaeology meets marine ecology: the antiquity of maritime cultures and human impacts on marine fisheries and ecosystems.Crossref | GoogleScholarGoogle Scholar |

Fitzpatrick, SM, and Keegan, WF (2007). Human impacts and adaptations in the Caribbean Islands: an historical ecology approach. Earth and Environmental Science Transactions of the Royal Society of Edinburgh 98, 29–45.
| Human impacts and adaptations in the Caribbean Islands: an historical ecology approach.Crossref | GoogleScholarGoogle Scholar |

Fitzpatrick, SM, Rick, TC, and Erlandson, JM (2015). Recent progress, trends, and developments in island and coastal archaeology. The Journal of Island and Coastal Archaeology 10, 3–27.
| Recent progress, trends, and developments in island and coastal archaeology.Crossref | GoogleScholarGoogle Scholar |

Goode, A (2006). The plight and outlook for migratory fish in the Gulf of Maine. Journal of Contemporary Water Research & Education 134, 23–28.
| The plight and outlook for migratory fish in the Gulf of Maine.Crossref | GoogleScholarGoogle Scholar |

Granéli E, Turner JT (2006) ‘Ecology of harmful algae.’ (Springer: Berlin, Germany)

Hall, CJ, Jordaan, A, and Frisk, MG (2011). The historic influence of dams on diadromous fish habitat with a focus on river herring and hydrologic longitudinal connectivity. Landscape Ecology 26, 95–107.
| The historic influence of dams on diadromous fish habitat with a focus on river herring and hydrologic longitudinal connectivity.Crossref | GoogleScholarGoogle Scholar |

Hall, CJ, Jordaan, A, and Frisk, MG (2012). Centuries of anadromous forage fish loss: consequences for ecosystem connectivity and productivity. BioScience 62, 723–731.
| Centuries of anadromous forage fish loss: consequences for ecosystem connectivity and productivity.Crossref | GoogleScholarGoogle Scholar |

Hancock DA (1989) ‘A review of the shark bay pearling industry.’ (Fisheries Department of Western Australia: Perth, WA, Australia). Available at https://prospero.murdoch.edu.au/record=b1191597

Hardin, G (1968). The tragedy of the commons. Science 162, 1243–1248.
| The tragedy of the commons.Crossref | GoogleScholarGoogle Scholar |

Hay, ME (1984). Patterns of fish and urchin grazing on Caribbean coral reefs: are previous results typical? Ecology 65, 446–454.
| Patterns of fish and urchin grazing on Caribbean coral reefs: are previous results typical?Crossref | GoogleScholarGoogle Scholar |

Heisler, J, Glibert, PM, Burkholder, JM, Anderson, DM, Cochlan, W, Dennison, WC, Dortch, Q, Gobler, CJ, Heil, CA, Humphries, E, Lewitus, A, Magnien, R, Marshall, HG, Sellner, K, Stockwell, DA, Stoecker, DK, and Suddleson, M (2008). Eutrophication and harmful algal blooms: a scientific consensus. Harmful Algae 8, 3–13.
| Eutrophication and harmful algal blooms: a scientific consensus.Crossref | GoogleScholarGoogle Scholar |

Hughes, TP (1994). Catastrophes, phase shifts, and large-scale degradation of a Caribbean coral reef. Science 265, 1547–1551.
| Catastrophes, phase shifts, and large-scale degradation of a Caribbean coral reef.Crossref | GoogleScholarGoogle Scholar |

Jackson, JBC (2001). What was natural in the coastal oceans? Proceedings of the National Academy of Sciences 98, 5411–5418.
| What was natural in the coastal oceans?Crossref | GoogleScholarGoogle Scholar |

Jackson, JBC, and Sheldon, PR (1994). Constancy and change of life in the sea. Philosophical Transactions of the Royal Society of London – B. Biological Sciences 344, 55–60.
| Constancy and change of life in the sea.Crossref | GoogleScholarGoogle Scholar |

Jackson, JBC, Kirby, MX, Berger, WH, Bjorndal, KA, Botsford, LW, Bourque, BJ, Bradbury, RH, Cooke, R, Erlandson, J, Estes, JA, Hughes, TP, Kidwell, S, Lange, CB, Lenihan, HS, Pandolfi, JM, Peterson, CH, Steneck, RS, Tegner, MJ, and Warner, RR (2001). Historical overfishing and the recent collapse of coastal ecosystems. Science 293, 629–637.
| Historical overfishing and the recent collapse of coastal ecosystems.Crossref | GoogleScholarGoogle Scholar |

Jones, CG, Lawton, JH, and Shachak, M (1994). Organisms as ecosystem engineers. Oikos 69, 373–386.
| Organisms as ecosystem engineers.Crossref | GoogleScholarGoogle Scholar |

Kemp, WM, Boynton, WR, Adolf, JE, Boesch, DF, Boicourt, WC, Brush, G, Cornwell, JC, Fisher, TR, Glibert, PM, Hagy, JD, Harding, LW, Houde, ED, Kimmel, DG, Miller, WD, Newell, RIE, Roman, MR, Smith, EM, and Stevenson, JC (2005). Eutrophication of Chesapeake Bay: historical trends and ecological interactions. Marine Ecology Progress Series 303, 1–29.
| Eutrophication of Chesapeake Bay: historical trends and ecological interactions.Crossref | GoogleScholarGoogle Scholar |

Kirby, MX (2004). Fishing down the coast: historical expansion and collapse of oyster fisheries along continental margins. Proceedings of the National Academy of Sciences 101, 13096–13099.
| Fishing down the coast: historical expansion and collapse of oyster fisheries along continental margins.Crossref | GoogleScholarGoogle Scholar |

Kraeuter, JN, Buckner, S, and Powell, EN (2005). A note on a spawner–recruit relationship for a heavily exploited bivalve: the case of northern quahogs (hard clams), Mercenaria mercenaria in great south bay New York. Journal of Shellfish Research 24, 1043–1052.
| A note on a spawner–recruit relationship for a heavily exploited bivalve: the case of northern quahogs (hard clams), Mercenaria mercenaria in great south bay New York.Crossref | GoogleScholarGoogle Scholar |

Kraeuter, JN, Klinck, JM, Powell, EN, Hofmann, EE, Buckner, SC, Grizzle, RE, and Bricelj, VM (2008). Effects of the fishery on the Northern Quahog (=hard clam, Mercenaria mercenaria L.) population in Great South Bay, New York: a modeling study. Journal of Shellfish Research 27, 653–666.
| Effects of the fishery on the Northern Quahog (=hard clam, Mercenaria mercenaria L.) population in Great South Bay, New York: a modeling study.Crossref | GoogleScholarGoogle Scholar |

Lake, PS, Bond, N, and Reich, P (2007). Linking ecological theory with stream restoration. Freshwater Biology 52, 597–615.
| Linking ecological theory with stream restoration.Crossref | GoogleScholarGoogle Scholar |

Lauer, M, and Aswani, S (2009). Indigenous ecological knowledge as situated practices: understanding fishers’ knowledge in the Western Solomon Islands. American Anthropologist 111, 317–329.
| Indigenous ecological knowledge as situated practices: understanding fishers’ knowledge in the Western Solomon Islands.Crossref | GoogleScholarGoogle Scholar |

Lavery, PS, Lukatelich, RJ, and McComb, AJ (1991). Changes in the biomass and species composition of macroalgae in a eutrophic estuary. Estuarine, Coastal and Shelf Science 33, 1–22.
| Changes in the biomass and species composition of macroalgae in a eutrophic estuary.Crossref | GoogleScholarGoogle Scholar |

Lessios, HA (1988). Mass mortality of Diadema antillarum in the Caribbean: what have we learned? Annual Review of Ecology and Systematics 19, 371–393.
| Mass mortality of Diadema antillarum in the Caribbean: what have we learned?Crossref | GoogleScholarGoogle Scholar |

Lotze, HK (2005). Radical changes in the Wadden Sea fauna and flora over the last 2,000 years. Helgoland Marine Research 59, 71–83.
| Radical changes in the Wadden Sea fauna and flora over the last 2,000 years.Crossref | GoogleScholarGoogle Scholar |

Lotze, HK, and Worm, B (2009). Historical baselines for large marine animals. Trends in Ecology & Evolution 24, 254–262.
| Historical baselines for large marine animals.Crossref | GoogleScholarGoogle Scholar |

Lotze, HK, Reise, K, Worm, B, van Beusekom, J, Busch, M, Ehlers, A, Heinrich, D, Hoffmann, RC, Holm, P, Jensen, C, Knottnerus, OS, Langhanki, N, Prummel, W, Vollmer, M, and Wolff, WJ (2005). Human transformations of the Wadden Sea ecosystem through time: a synthesis. Helgoland Marine Research 59, 84–95.
| Human transformations of the Wadden Sea ecosystem through time: a synthesis.Crossref | GoogleScholarGoogle Scholar |

Lotze, HK, Lenihan, HS, Bourque, BJ, Bradbury, RH, Cooke, RG, Kay, MC, Kidwell, SM, Kirby, MX, Peterson, CH, and Jackson, JBC (2006). Depletion, degradation, and recovery potential of estuaries and coastal seas. Science 312, 1806–1809.
| Depletion, degradation, and recovery potential of estuaries and coastal seas.Crossref | GoogleScholarGoogle Scholar |

Marsh, H, De’ath, G, Gribble, N, and Lane, B (2005). Historical marine population estimates: triggers or targets for conservation? The dugong case study. Ecological Applications 15, 481–492.
| Historical marine population estimates: triggers or targets for conservation? The dugong case study.Crossref | GoogleScholarGoogle Scholar |

Masel, J, and Smallwood, D (2000). Indications of long term changes in the species composition and catch rates of postlarval and juvenile prawns in Moreton Bay. Proceedings of the Royal Society of Queensland 109, 119–130.

Meadows, PS, Meadows, A, and Murray, JMH (2012). Biological modifiers of marine benthic seascapes: their role as ecosystem engineers. Geomorphology 157–158, 31–48.
| Biological modifiers of marine benthic seascapes: their role as ecosystem engineers.Crossref | GoogleScholarGoogle Scholar |

Monsarrat, S, Pennino, MG, Smith, TD, Reeves, RR, Meynard, CN, Kaplan, DM, and Rodrigues, ASL (2016). A spatially explicit estimate of the prewhaling abundance of the endangered North Atlantic right whale. Conservation Biology 30, 783–791.
| A spatially explicit estimate of the prewhaling abundance of the endangered North Atlantic right whale.Crossref | GoogleScholarGoogle Scholar |

Morelli, G, Gasparon, M, Fierro, D, Hu, W-P, and Zawadzki, A (2012). Historical trends in trace metal and sediment accumulation in intertidal sediments of Moreton Bay, southeast Queensland, Australia. Chemical Geology 300-301, 152–164.
| Historical trends in trace metal and sediment accumulation in intertidal sediments of Moreton Bay, southeast Queensland, Australia.Crossref | GoogleScholarGoogle Scholar |

Myers, RA, and Worm, B (2005). Extinction, survival or recovery of large predatory fishes. Philosophical Transactions of the Royal Society of London – B. Biological Sciences 360, 13–20.
| Extinction, survival or recovery of large predatory fishes.Crossref | GoogleScholarGoogle Scholar |

Newton JS (2013) ‘A savage history: whaling in the Pacific and Southern oceans.’ (NewSouth Publishing: Sydney, NSW, Australia)

NOAA Fisheries (2017) North Atlantic right whale (Eubalaena glacialis): western Atlantic stock. Marine Mammal Stock Assessment Reports by species/stock. (NOAA Fisheries) Available at https://media.fisheries.noaa.gov/dam-migration/ao2016whnr-w_508.pdf

Nuttall, MA, Jordaan, A, Cerrato, RM, and Frisk, MG (2011). Identifying 120 years of decline in ecosystem structure and maturity of Great South Bay, New York using the Ecopath modelling approach. Ecological Modelling 222, 3335–3345.
| Identifying 120 years of decline in ecosystem structure and maturity of Great South Bay, New York using the Ecopath modelling approach.Crossref | GoogleScholarGoogle Scholar |

Nyström, M, Norström, AV, Blenckner, T, de la Torre-Castro, M, Eklöf, JS, Folke, C, Österblom, H, Steneck, RS, Thyresson, M, and Troell, M (2012). Confronting feedbacks of degraded marine ecosystems. Ecosystems 15, 695–710.
| Confronting feedbacks of degraded marine ecosystems.Crossref | GoogleScholarGoogle Scholar |

Pauly, D (1995). Anecdotes and the shifting baseline syndrome of fisheries. Trends in Ecology & Evolution 10, 430.
| Anecdotes and the shifting baseline syndrome of fisheries.Crossref | GoogleScholarGoogle Scholar |

Pauly, D, and Palomares, M-L (2005). Fishing down marine food web: it is far more pervasive than we thought. Bulletin of Marine Science 76, 197–211.

Pauly, D, Christensen, V, Dalsgaard, J, Froese, R, and Torres, F (1998). Fishing down marine food webs. Science 279, 860–863.
| Fishing down marine food webs.Crossref | GoogleScholarGoogle Scholar |

Pearce, AF, and Feng, M (2013). The rise and fall of the ‘marine heat wave’ off Western Australia during the summer of 2010/2011. Journal of Marine Systems 111–112, 139–156.
| The rise and fall of the ‘marine heat wave’ off Western Australia during the summer of 2010/2011.Crossref | GoogleScholarGoogle Scholar |

Pershing, AJ, Wahle, RA, Meyers, PC, and Lawton, P (2012). Large-scale coherence in New England lobster (Homarus americanus), settlement and associations with regional atmospheric conditions. Fisheries Oceanography 21, 348–362.
| Large-scale coherence in New England lobster (Homarus americanus), settlement and associations with regional atmospheric conditions.Crossref | GoogleScholarGoogle Scholar |

Pinnegar, JK, and Engelhard, GH (2008). The ‘shifting baseline’ phenomenon: a global perspective. Reviews in Fish Biology and Fisheries 18, 1–16.
| The ‘shifting baseline’ phenomenon: a global perspective.Crossref | GoogleScholarGoogle Scholar |

Pitcher, TJ (2001). Fisheries managed to rebuild ecosystems? Reconstructing the past to salvage the future. Ecological Applications 11, 601–617.
| Fisheries managed to rebuild ecosystems? Reconstructing the past to salvage the future.Crossref | GoogleScholarGoogle Scholar |

Poulsen, B (2010). The variability of fisheries and fish populations prior to industrialized fishing: an appraisal of the historical evidence. Journal of Marine Systems 79, 327–332.
| The variability of fisheries and fish populations prior to industrialized fishing: an appraisal of the historical evidence.Crossref | GoogleScholarGoogle Scholar |

Reynolds, JD, Dulvy, NK, Goodwin, NB, and Hutchings, JA (2005). Biology of extinction risk in marine fishes. Proceedings of the Royal Society of London – B. Biological Sciences 272, 2337–2344.
| Biology of extinction risk in marine fishes.Crossref | GoogleScholarGoogle Scholar |

Rick, TC, and Lockwood, R (2013). Integrating paleobiology, archeology, and history to inform biological conservation. Conservation Biology 27, 45–54.
| Integrating paleobiology, archeology, and history to inform biological conservation.Crossref | GoogleScholarGoogle Scholar |

Rick, TC, Reeder-Myers, LA, Hofman, CA, Breitburg, D, Lockwood, R, Henkes, G, Kellogg, L, Lowery, D, Luckenbach, MW, Mann, R, Ogburn, MB, Southworth, M, Wah, J, Wesson, J, and Hines, AH (2016). Millennial-scale sustainability of the Chesapeake Bay Native American oyster fishery. Proceedings of the National Academy of Sciences 113, 6568–6573.
| Millennial-scale sustainability of the Chesapeake Bay Native American oyster fishery.Crossref | GoogleScholarGoogle Scholar |

Roberts CM (2007) ‘The unnatural history of the sea.’ (Island Press/Shearwater Books: Washington, DC, USA)
| Crossref |

Rodrique JP, Comtois C, Slack B (2017) ‘The geography of transport systems.’ (Routledge: New York, NY, USA) Available at https://people.hofstra.edu/geotrans/index.html

Roman, J, and Palumbi, SR (2003). Whales before whaling in the North Atlantic. Science 301, 508–510.
| Whales before whaling in the North Atlantic.Crossref | GoogleScholarGoogle Scholar |

Rönnbäck, K (2012). The speed of ships and shipping productivity in the age of sail. European Review of Economic History 16, 469–489.
| The speed of ships and shipping productivity in the age of sail.Crossref | GoogleScholarGoogle Scholar |

Rosenberg, AA, Bolster, WJ, Alexander, KE, Leavenworth, WB, Cooper, AB, and McKenzie, MG (2005). The history of ocean resources: modeling cod biomass using historical records. Frontiers in Ecology and the Environment 3, 78–84.
| The history of ocean resources: modeling cod biomass using historical records.Crossref | GoogleScholarGoogle Scholar |

Sáenz-Arroyo, A, Roberts, CM, Torre, J, and Cariño-Olvera, M (2005). Using fishers’ anecdotes, naturalists’ observations and grey literature to reassess marine species at risk: the case of the Gulf grouper in the Gulf of California, Mexico. Fish and Fisheries 6, 121–133.
| Using fishers’ anecdotes, naturalists’ observations and grey literature to reassess marine species at risk: the case of the Gulf grouper in the Gulf of California, Mexico.Crossref | GoogleScholarGoogle Scholar |

Sáenz-Arroyo, A, Roberts, CM, Torre, J, Cariño-Olvera, M, and Hawkins, JP (2006). The value of evidence about past abundance: marine fauna of the Gulf of California through the eyes of 16th to 19th century travellers. Fish and Fisheries 7, 128–146.
| The value of evidence about past abundance: marine fauna of the Gulf of California through the eyes of 16th to 19th century travellers.Crossref | GoogleScholarGoogle Scholar |

Scheffer, M, and Carpenter, SR (2003). Catastrophic regime shifts in ecosystems: linking theory to observation. Trends in Ecology & Evolution 18, 648–656.
| Catastrophic regime shifts in ecosystems: linking theory to observation.Crossref | GoogleScholarGoogle Scholar |

Schindler DW, Vallentyne JR (2008) ‘The algal bowl: overfertilization of the world’s freshwaters and estuaries.’ (Earthscan: London, UK)

Schwerdtner Máñez, K, Holm, P, Blight, L, Coll, M, MacDiarmid, A, Ojaveer, H, Poulsen, B, and Tull, M (2014). The future of the oceans past: towards a global marine historical research initiative. PLoS ONE 9, e101466.
| The future of the oceans past: towards a global marine historical research initiative.Crossref | GoogleScholarGoogle Scholar |

Self-Trail, JM, Robinson, MM, Bralower, TJ, Sessa, JA, Hajek, EA, Kump, LR, Trampush, SM, Willard, DA, Edwards, LE, Powars, DS, and Wandless, GA (2017). Shallow marine response to global climate change during the Paleocene–Eocene Thermal Maximum, Salisbury Embayment, USA. Paleoceanography 32, 710–728.
| Shallow marine response to global climate change during the Paleocene–Eocene Thermal Maximum, Salisbury Embayment, USA.Crossref | GoogleScholarGoogle Scholar |

Shen, Z-L (2001). historical changes in nutrient structure and its influences on phytoplantkon composition in Jiaozhou Bay. Estuarine, Coastal and Shelf Science 52, 211–224.
| historical changes in nutrient structure and its influences on phytoplantkon composition in Jiaozhou Bay.Crossref | GoogleScholarGoogle Scholar |

Sommer R (2004) Historical change of wetland communities of Moreton Bay: an assessment of human and climatic influences. BMarSci(Hons) thesis, University of Queensland, Brisbane, Qld, Australia.

Srinivasan, UT, Watson, R, and Rashid Sumaila, U (2012). Global fisheries losses at the exclusive economic zone level, 1950 to present. Marine Policy 36, 544–549.
| Global fisheries losses at the exclusive economic zone level, 1950 to present.Crossref | GoogleScholarGoogle Scholar |

Steffen W, Hughes L (2013) The critical decade 2013: climate change science, risks and response. Climate Commission Secretariat, Department of Industry, Innovation, Climate Change, Science, Research and Tertiary Education, Australia.

Swetnam, TW, Allen, CD, and Betancourt, JL (1999). Applied historical ecology: using the past to manage for the future. Ecological Applications 9, 1189–1206.
| Applied historical ecology: using the past to manage for the future.Crossref | GoogleScholarGoogle Scholar |

Szabó, P (2015). Historical ecology: past, present and future. Biological Reviews 90, 997–1014.
| Historical ecology: past, present and future.Crossref | GoogleScholarGoogle Scholar |

Tett, P, Gowen, R, Mills, D, Fernandes, T, Gilpin, L, Huxham, M, Kennington, K, Read, P, Service, M, Wilkinson, M, and Malcolm, S (2007). Defining and detecting undesirable disturbance in the context of marine eutrophication. Marine Pollution Bulletin 55, 282–297.
| Defining and detecting undesirable disturbance in the context of marine eutrophication.Crossref | GoogleScholarGoogle Scholar |

The British Museum (2017) The industrial revolution and the changing face of Britain: shipbuilding and maritime trade. (The British Museum, UK) Available at https://www.britishmuseum.org/research/publications/online

Thompson C (2010) Gulf of Maine in Context: State of the Gulf of Maine Report, Gulf of Maine Council on the Marine Environment and Fisheries and Ocean Canada.

Thomson, JA, Burkholder, DA, Heithaus, MR, Fourqurean, JW, Fraser, MW, Statton, J, and Kendrick, GA (2015). Extreme temperatures, foundation species, and abrupt ecosystem change: an example from an iconic seagrass ecosystem. Global Change Biology 21, 1463–1474.
| Extreme temperatures, foundation species, and abrupt ecosystem change: an example from an iconic seagrass ecosystem.Crossref | GoogleScholarGoogle Scholar |

US National Marine Fisheries Service (2006) Review of the status of the right whales in the North Atlantic and North Pacific oceans. (NOAA, NMFS) Available at https://repository.library.noaa.gov/view/noaa/16284

van de Koppel J, Tett P, Naqvi SWA, Oguz T, Perillo GME, Rabalais NN, d’Alcalae MR, Su J, Zhang J (2009) Threshold effects in semi-enclosed marine systems. In ‘Watersheds, bays, and bounded seas: the science and management of semi-enclosed marine systems’. (Eds ER Urban, B Sundby, P Malanotte-Rizzoli, JM Melillo) pp. 31–47. (Island Press: Washington, DC, USA) Available at http://drs.nio.org/drs/handle/2264/3504

Van der Merwe, D, and Price, KP (2015). Harmful algal bloom characterization at ultra-high spatial and temporal resolution using small unmanned aircraft systems. Toxins 7, 1065–1078.
| Harmful algal bloom characterization at ultra-high spatial and temporal resolution using small unmanned aircraft systems.Crossref | GoogleScholarGoogle Scholar |

van der Veer, HW, Dapper, R, Henderson, PA, Jung, AS, Philippart, CJM, Witte, JIJ, and Zuur, AF (2015). Changes over 50 years in fish fauna of a temperate coastal sea: degradation of trophic structure and nursery function. Estuarine, Coastal and Shelf Science 155, 156–166.
| Changes over 50 years in fish fauna of a temperate coastal sea: degradation of trophic structure and nursery function.Crossref | GoogleScholarGoogle Scholar |

Walker, DI, Kendrick, GA, and McComb, AJ (1988). The distribution of seagrass species in Shark Bay, Western Australia, with notes on their ecology. Aquatic Botany 30, 305–317.
| The distribution of seagrass species in Shark Bay, Western Australia, with notes on their ecology.Crossref | GoogleScholarGoogle Scholar |

Wang, B, and Wang, Z (2011). Long-term variations in chlorophyll-a and primary productivity in Jiaozhou Bay, China. Journal of Marine Biology 2011, 1–7.
| Long-term variations in chlorophyll-a and primary productivity in Jiaozhou Bay, China.Crossref | GoogleScholarGoogle Scholar |

Watson, EB, and Byrne, R (2009). Abundance and diversity of tidal marsh plants along the salinity gradient of the San Francisco Estuary: implications for global change ecology. Plant Ecology 205, 113–128.
| Abundance and diversity of tidal marsh plants along the salinity gradient of the San Francisco Estuary: implications for global change ecology.Crossref | GoogleScholarGoogle Scholar |

Worm, B, Barbier, EB, Beaumont, N, Duffy, JE, Folke, C, Halpern, BS, Jackson, JBC, Lotze, HK, Micheli, F, Palumbi, SR, Sala, E, Selkoe, KA, Stachowicz, JJ, and Watson, R (2006). Impacts of biodiversity loss on ocean ecosystem services. Science 314, 787–790.
| Impacts of biodiversity loss on ocean ecosystem services.Crossref | GoogleScholarGoogle Scholar |

Zhang, P, Su, Y, Liang, S-K, Li, K-Q, Li, Y-B, and Wang, X-L (2017). Assessment of long-term water quality variation affected by high-intensity land-based inputs and land reclamation in Jiaozhou Bay, China. Ecological Indicators 75, 210–219.
| Assessment of long-term water quality variation affected by high-intensity land-based inputs and land reclamation in Jiaozhou Bay, China.Crossref | GoogleScholarGoogle Scholar |

Zu Ermgassen, PSE, Spalding, MD, Blake, B, Coen, LD, Dumbauld, B, Geiger, S, Grabowski, JH, Grizzle, R, Luckenbach, M, McGraw, K, Rodney, W, Ruesink, JL, Powers, SP, and Brumbaugh, R (2012). Historical ecology with real numbers: past and present extent and biomass of an imperilled estuarine habitat. Proceedings of the Royal Society of London – B. Biological Sciences 279, 3393–3400.
| Historical ecology with real numbers: past and present extent and biomass of an imperilled estuarine habitat.Crossref | GoogleScholarGoogle Scholar |