Regionalisation of freshwater fish assemblages in the Murray–Darling Basin, Australia
Serena H. Hamilton A B E , Carmel A. Pollino C and Keith F. Walker DA Centre for Ecosystem Management, Edith Cowan University, 270 Joondalup Drive, Joondalup, WA 6027, Australia.
B Fenner School of Environment and Society, The Australian National University, Canberra, ACT 0200, Australia.
C CSIRO Land and Water, GPO Box 1666, Canberra, ACT 2601, Australia.
D Deceased. Formerly at School of Biological Sciences, The University of Adelaide, SA 5005, Australia.
E Corresponding author. Email: s.hamilton@ecu.edu.au
Marine and Freshwater Research 68(4) 629-649 https://doi.org/10.1071/MF15359
Submitted: 18 September 2015 Accepted: 29 February 2016 Published: 14 June 2016
Abstract
Regionalisations based on species assemblages are a useful framework for characterising ecological communities and revealing patterns in the environment. In the present study, multivariate analyses are used to discern large-scale patterns in fish assemblages in the Murray–Darling Basin, based on information from the Murray–Darling Basin Authority’s first Sustainable Rivers Audit (SRA), conducted in 2004–2007. The Basin is classified into nine regions with similar historical fish assemblages (i.e. without major human intervention), using data that combine expert opinion, museum collections and historical records. These regions are (1) Darling Basin Plains, (2) Northern Uplands, (3) Murray Basin Plains, (4) Northern Alps, (5) Central East, (6) Avoca Lowland, (7) Southern Slopes, (8) Southern Alps and (9) South-Western Slopes. Associations between assemblages and physical variables (catchment area, elevation, hydrology, precipitation, temperature) are identified and used to reinforce the definitions of regions. Sustainable Rivers Audit data are compared with the historical assemblages, highlighting species whose range and abundance have changed since the early 19th century. Notable changes include declines in native species such as silver perch, river blackfish, mountain galaxias, Macquarie perch, trout cod and freshwater catfish, and the advent of alien species including common carp, eastern gambusia, goldfish, redfin perch, brown trout and rainbow trout. Less significant declines are evident for native carp gudgeons, golden perch, two-spined blackfish, bony herring and flathead gudgeon. Changes are evident even in regions where habitats have been little disturbed in the past 200 years.
Additional keywords: bioregions, data mining, ecological modelling, ecoregions, exploratory data analysis, invasive species.
References
Abell, R., Thieme, M., Revenga, C., Bryer, M., Kottelat, M., Bogutskaya, N., Coad, B., Mandrak, N., Contreras-Balderas, S., Bussing, W., Stiassny, M. L. J., Skelton, P., Allen, G. R., Unmack, P., Naseka, A., Ng, R., Sindorf, N., Robertson, J., Armijo, E., Higgins, J., Heibel, T. J., Wikramanayake, E., Olson, D., Lopez, H. L., Reis, R. E., Lundberg, J. G., Sabaj Perez, M. H., and Petry, P. (2008). Freshwater ecoregions of the world: a new map of biogeographic units for freshwater biodiversity conservation. Bioscience 58, 403–414.| Freshwater ecoregions of the world: a new map of biogeographic units for freshwater biodiversity conservation.Crossref | GoogleScholarGoogle Scholar |
Anderson, M. J., and Walsh, D. C. I. (2013). PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: what null hypothesis are you testing? Ecological Monographs 83, 557–574.
| PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: what null hypothesis are you testing?Crossref | GoogleScholarGoogle Scholar |
Angermeier, P. L. (1995). Ecological attributes of extinction-prone species: loss of freshwater fishes of Virginia. Conservation Biology 9, 143–158.
| Ecological attributes of extinction-prone species: loss of freshwater fishes of Virginia.Crossref | GoogleScholarGoogle Scholar |
Balcombe, S. R., Arthington, A. H., Thoms, M. C., and Wilson, G. G. (2011). Fish assemblage patterns across a gradient of flow regulation in an Australian dryland river. River Research and Applications 27, 168–183.
| Fish assemblage patterns across a gradient of flow regulation in an Australian dryland river.Crossref | GoogleScholarGoogle Scholar |
Baumgartner, L., Zampatti, B., Jones, M., Stuart, I., and Mallen‐Cooper, M. (2014). Fish passage in the Murray–Darling Basin, Australia: not just an upstream battle. Ecological Management & Restoration 15, 28–39.
| Fish passage in the Murray–Darling Basin, Australia: not just an upstream battle.Crossref | GoogleScholarGoogle Scholar |
Bond, N. R., and Lake, P. S. (2003). Characterizing fish–habitat associations in streams as the first step in ecological restoration. Austral Ecology 28, 611–621.
| Characterizing fish–habitat associations in streams as the first step in ecological restoration.Crossref | GoogleScholarGoogle Scholar |
Booth, D. J., Bond, N., and Macreadie, P. (2011). Detecting range shifts among Australian fishes in response to climate change. Marine and Freshwater Research 62, 1027–1042.
| Detecting range shifts among Australian fishes in response to climate change.Crossref | GoogleScholarGoogle Scholar |
Boys, C. A., and Thoms, M. C. (2006). A large-scale, hierarchical approach for assessing habitat associations of fish assemblages in large dryland rivers. Hydrobiologia 572, 11–31.
| A large-scale, hierarchical approach for assessing habitat associations of fish assemblages in large dryland rivers.Crossref | GoogleScholarGoogle Scholar |
Bray, J. R., and Curtis, J. T. (1957). An ordination of upland forest assemblages of southern Wisconsin. Ecological Monographs 27, 325–349.
| An ordination of upland forest assemblages of southern Wisconsin.Crossref | GoogleScholarGoogle Scholar |
Bunn, S. E., and Davies, P. M. (2000). Biological processes in running waters and their implications for the assessment of ecological integrity. Hydrobiologia 422–423, 61–70.
| Biological processes in running waters and their implications for the assessment of ecological integrity.Crossref | GoogleScholarGoogle Scholar |
Clarke, K. R., and Gorley, R. N. (2001). ‘PRIMER v5: User Manual/Tutorial.’ (PRIMER-E Ltd: Plymouth, UK.)
Colloff, M. J., Caley, P., Saintilan, N., Pollino, C. A., and Crossman, N. D. (2015). Long-term ecological trends of flow-dependent ecosystems in a major regulated river basin. Marine and Freshwater Research 66, 957–969.
| Long-term ecological trends of flow-dependent ecosystems in a major regulated river basin.Crossref | GoogleScholarGoogle Scholar |
Crook, D. A., Robertson, A. I., King, A. J., and Humphries, P. (2001). The influence of spatial scale and habitat arrangement on diel patterns of habitat use by two lowland river fishes. Oecologia 129, 525–533.
| The influence of spatial scale and habitat arrangement on diel patterns of habitat use by two lowland river fishes.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DC%2BC2cvptlCqsw%3D%3D&md5=35deabfe03dcc7379c6ed5351c8dcec2CAS | 24577692PubMed |
CSIRO (2008). Water availability in the Murray–Darling Basin report. The Murray–Darling Basin Sustainable Yields Project. CSIRO, Canberra.
Davies, P. E., Harris, J. H., Hillman, T. J., and Walker, K. F. (2008). Sustainable rivers audit 1: a report on the ecological health of rivers in the Murray–Darling Basin, 2004–2007. Murray–Darling Basin Commission, Canberra.
Davies, P. E., Harris, J. H., Hillman, T. J., and Walker, K. F. (2010). The sustainable rivers audit: assessing river ecosystem health in the Murray–Darling Basin, Australia. Marine and Freshwater Research 61, 764–777.
| The sustainable rivers audit: assessing river ecosystem health in the Murray–Darling Basin, Australia.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3cXptFGrs7Y%3D&md5=c88cb2efb657b3a36eb605b52a041147CAS |
Davies, P. E., Stewardson, M., Hillman, T., Roberts, J., and Thoms, M. (2012). Sustainable rivers audit 2: the ecological health of rivers in the Murray–Darling Basin at the end of the millennium drought (2008–2010). Murray–Darling Basin Authority, Canberra.
Driver, P. D., Harris, J. H., Closs, G. P., and Koen, T. B. (2005). Effects of flow regulation on carp (Cyprinus carpio L.) recruitment in the Murray–Darling Basin, Australia. River Research and Applications 21, 327–335.
| Effects of flow regulation on carp (Cyprinus carpio L.) recruitment in the Murray–Darling Basin, Australia.Crossref | GoogleScholarGoogle Scholar |
Esselman, P. C., and Allan, J. D. (2010). Relative influences of catchment- and reach-scale abiotic factors on freshwater fish assemblages in rivers of northeastern Mesoamerica. Ecology Freshwater Fish 19, 439–454.
| Relative influences of catchment- and reach-scale abiotic factors on freshwater fish assemblages in rivers of northeastern Mesoamerica.Crossref | GoogleScholarGoogle Scholar |
Gehrke, P. C., and Harris, J. H. (2000). Large-scale patterns in species richness and composition of temperate riverine fish assemblages, south-eastern Australia. Marine and Freshwater Research 51, 165–182.
| Large-scale patterns in species richness and composition of temperate riverine fish assemblages, south-eastern Australia.Crossref | GoogleScholarGoogle Scholar |
Götzinger, J., and Bárdossy, A. (2007). Comparison of four regionalisation methods for a distributed hydrological model. Journal of Hydrology 333, 374–384.
| Comparison of four regionalisation methods for a distributed hydrological model.Crossref | GoogleScholarGoogle Scholar |
Growns, I. (2008). The influence of changes to river hydrology on freshwater fish in regulated rivers of the Murray–Darling Basin. Hydrobiologia 596, 203–211.
| The influence of changes to river hydrology on freshwater fish in regulated rivers of the Murray–Darling Basin.Crossref | GoogleScholarGoogle Scholar |
Harris, J. H. (1995). The use of fish in ecological assessments. Australian Journal of Ecology 20, 65–80.
| The use of fish in ecological assessments.Crossref | GoogleScholarGoogle Scholar |
Harris, J. H., and Silveira, R. (1999). Large-scale assessments of river health using an index of biotic integrity with low-diversity fish communities. Freshwater Biology 41, 235–252.
| Large-scale assessments of river health using an index of biotic integrity with low-diversity fish communities.Crossref | GoogleScholarGoogle Scholar |
Harris, J. H., Bond, N. R., Closs, G. P., Gehrke, P. C., Nicol, S. J., and Ye, Q. (2013). Dynamics of populations. In ‘Ecology of Australian Freshwater Fishes’. (Eds P. Humphries and K. F. Walker.) pp. 223–244. (CSIRO Publishing: Melbourne.)
Hoeinghaus, D. J., Winemiller, K. O., and Birnbaum, J. S. (2007). Local and regional determinants of stream fish assemblage structure: inferences based on taxonomic vs. functional groups. Journal of Biogeography 34, 324–338.
| Local and regional determinants of stream fish assemblage structure: inferences based on taxonomic vs. functional groups.Crossref | GoogleScholarGoogle Scholar |
Huey, J. A., Schmidt, D. J., Balcombe, S. R., Marshall, J. C., and Hughes, J. M. (2011). High gene flow and metapopulation dynamics detected for three species in a dryland river system. Freshwater Biology 56, 2378–2390.
| High gene flow and metapopulation dynamics detected for three species in a dryland river system.Crossref | GoogleScholarGoogle Scholar |
Humphries, P., Brown, P., Douglas, J., Pickworth, A., Strongman, R., Hall, K., and Serafini, L. (2008). Flow-related patterns in abundance and composition of the fish fauna of a degraded Australian lowland river. Freshwater Biology 53, 789–813.
| Flow-related patterns in abundance and composition of the fish fauna of a degraded Australian lowland river.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1cXltlSltrY%3D&md5=610eb88cec1240cf0cf650fefb43c941CAS |
Hutchinson, M. F., McIntyre, S., Hobbs, R. J., Stein, J. L., Garnett, S., and Kinloch, J. (2005). Integrating a global agro-climatic classification with bioregional boundaries in Australia. Global Ecology and Biogeography 14, 197–212.
| Integrating a global agro-climatic classification with bioregional boundaries in Australia.Crossref | GoogleScholarGoogle Scholar |
Jackson, D. A., Peres-Neto, P. R., and Olden, J. D. (2001). What controls who is where in freshwater fish assemblages – the roles of biotic, abiotic, and spatial factors. Canadian Journal of Fisheries and Aquatic Sciences 58, 157–170.
Keitt, T. H., Bjørnstad, O. N., Dixon, P. M., and Citron-Pousty, S. (2002). Accounting for spatial pattern when modeling organism–environment interactions. Ecography 25, 616–625.
| Accounting for spatial pattern when modeling organism–environment interactions.Crossref | GoogleScholarGoogle Scholar |
Kennard, M. J., Pusey, B. J., Arthington, A. H., Harch, B. D., and Mackay, S. J. (2006). Development and application of a predictive model of freshwater fish assemblage composition to evaluate river health in eastern Australia. Hydrobiologia 572, 33–57.
| Development and application of a predictive model of freshwater fish assemblage composition to evaluate river health in eastern Australia.Crossref | GoogleScholarGoogle Scholar |
King, A. J., Tonkin, Z., and Mahoney, J. (2009). Environmental flow enhances native fish spawning and recruitment in the Murray River, Australia. River Research and Applications 25, 1205–1218.
| Environmental flow enhances native fish spawning and recruitment in the Murray River, Australia.Crossref | GoogleScholarGoogle Scholar |
King, A. J., Humphries, P., and McCasker, N. G. (2013). Reproduction and early life history. In ‘Ecology of Australian Freshwater Fishes’. (Eds P. Humphries and K. F. Walker.) pp. 159–194. (CSIRO Publishing, Melbourne.)
Kingsford, R. T., Mac Nally, R., King, A., Walker, K. F., Bino, G., Thompson, R., Wassens, S., and Humphries, P. (2015). A commentary on ‘Long-term ecological trends of flow-dependent ecosystems in a major regulated river basin’, by Matthew J. Colloff, Peter Caley, Neil Saintilan, Carmel A. Pollino and Neville D. Crossman. Marine and Freshwater Research 66, 970–980.
| A commentary on ‘Long-term ecological trends of flow-dependent ecosystems in a major regulated river basin’, by Matthew J. Colloff, Peter Caley, Neil Saintilan, Carmel A. Pollino and Neville D. Crossman.Crossref | GoogleScholarGoogle Scholar |
Leblanc, M., Tweed, S., Van Dijk, A., and Timbal, B. (2012). A review of historic and future hydrological changes in the Murray–Darling Basin. Global and Planetary Change 80–81, 226–246.
| A review of historic and future hydrological changes in the Murray–Darling Basin.Crossref | GoogleScholarGoogle Scholar |
Legendre, P. (1993). Spatial autocorrelation: trouble or new paradigm? Ecology 74, 1659–1673.
| Spatial autocorrelation: trouble or new paradigm?Crossref | GoogleScholarGoogle Scholar |
Levin, S. A. (1992). The problem of pattern and scale in ecology. Ecology 73, 1943–1967.
| The problem of pattern and scale in ecology.Crossref | GoogleScholarGoogle Scholar |
Lintermans, M. (2007). ‘Fishes of the Murray–Darling Basin: an Introductory Guide.’ (Murray–Darling Basin Commission: Canberra.)
Lintermans, M. (2013). Conservation and management. In ‘Ecology of Australian Freshwater Fishes’. (Eds P. Humphries and K. F. Walker.) pp. 283–316. (CSIRO Publishing: Melbourne.)
Marvier, M., Kareiva, P., and Neubert, M. G. (2004). Habitat destruction, fragmentation, and disturbance promote invasion by habitat generalists in a multispecies metapopulation. Risk Analysis 24, 869–878.
| Habitat destruction, fragmentation, and disturbance promote invasion by habitat generalists in a multispecies metapopulation.Crossref | GoogleScholarGoogle Scholar | 15357806PubMed |
Mayer, A., Winkler, R., and Fry, L. (2014). Classification of watersheds into integrated social and biophysical indicators with clustering analysis. Ecological Indicators 45, 340–349.
| Classification of watersheds into integrated social and biophysical indicators with clustering analysis.Crossref | GoogleScholarGoogle Scholar |
MDBC (2004). Fish theme pilot audit technical report: sustainable rivers audit. Murray–Darling Basin Commission, Canberra.
Muneepeerakul, R., Bertuzzo, E., Lynch, H. J., Fagan, W. F., Rinaldo, A., and Rodriguez-Iturbe, I. (2008). Neutral metacommunity models predict fish diversity patterns in Mississippi–Missouri basin. Nature 453, 220–222.
| Neutral metacommunity models predict fish diversity patterns in Mississippi–Missouri basin.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1cXls12ms7w%3D&md5=f94e1a23ecfbc068ceeaaf5377d0b894CAS | 18464742PubMed |
Olden, J. D., and Kennard, M. J. (2010). Intercontinental comparison of fish life history strategies along a gradient of hydrologic variability. American Fisheries Society Symposium 73, 83–107.
Olsgard, F., Somerfield, P. J., and Carr, M. R. (1997). Relationship between taxonomic resolution and data transformations in analyses of a macrobenthic community along an established pollution gradient. Marine Ecology Progress Series 149, 173–181.
| Relationship between taxonomic resolution and data transformations in analyses of a macrobenthic community along an established pollution gradient.Crossref | GoogleScholarGoogle Scholar |
Olson, D. M., Dinerstein, E., Wikramanayake, E. D., Burgess, N. D., Powell, G. V. N., Underwood, E. C., D’amico, J. A., Itoua, I., Strand, H. E., Morrison, J. C., Loucks, C. J., Allnutt, T. F., Ricketts, T. H., Kura, Y., Larmoreux, J. F., Wettengel, W. W., Hedao, P., and Kassem, K. R. (2001). Terrestrial ecoregions of the world: a new map of life on Earth. Bioscience 51, 933–938.
| Terrestrial ecoregions of the world: a new map of life on Earth.Crossref | GoogleScholarGoogle Scholar |
Pérez-Losada, M., Bond-Buckup, G., Jara, C. G., and Crandall, K. A. (2009). Conservation assessment of southern South American freshwater ecoregions on the basis of the distribution and genetic diversity of crabs from the genus Aegla. Conservation Biology 23, 692–702.
| Conservation assessment of southern South American freshwater ecoregions on the basis of the distribution and genetic diversity of crabs from the genus Aegla.Crossref | GoogleScholarGoogle Scholar | 19236451PubMed |
Poff, N. L., and Zimmerman, J. K. H. (2010). Ecological responses to altered flow regimes: a literature review to inform environmental flows science and management. Freshwater Biology 55, 194–205.
| Ecological responses to altered flow regimes: a literature review to inform environmental flows science and management.Crossref | GoogleScholarGoogle Scholar |
Pool, T. K., Olden, J. D., Whittier, J. B., and Paukert, C. P. (2010). Environmental drivers of fish functional diversity and composition in the Lower Colorado River Basin. Canadian Journal of Fisheries and Aquatic Sciences 67, 1791–1807.
| Environmental drivers of fish functional diversity and composition in the Lower Colorado River Basin.Crossref | GoogleScholarGoogle Scholar |
Reid, M. A., and Brooks, J. J. (2000). Detecting effects of environmental water allocations in wetlands of the Murray–Darling Basin, Australia. Regulated Rivers: Research and Management 16, 479–496.
| Detecting effects of environmental water allocations in wetlands of the Murray–Darling Basin, Australia.Crossref | GoogleScholarGoogle Scholar |
Richter, B., Baumgartner, V., and Wigington, R. (1997). How much water does a river need? Freshwater Biology 37, 231–249.
| How much water does a river need?Crossref | GoogleScholarGoogle Scholar |
Shipley, B. (2000). ‘Cause and Correlation in Biology.’ (Cambridge University Press: Cambridge, UK.)
Snelder, T. H., and Lamouroux, N. (2010). Co-variation of fish assemblages, flow regimes and other habitat factors in French rivers. Freshwater Biology 55, 881–892.
| Co-variation of fish assemblages, flow regimes and other habitat factors in French rivers.Crossref | GoogleScholarGoogle Scholar |
Thoms, M. C., Rayburg, S. C., and Neave, M. R. (2008). The physical diversity and assessment of a large river system: the Murray Darling Basin, Australia. In ‘Large Rivers: Geomorphology and Management’. (Ed. A. Gupta.) pp. 587–608. (Wiley: Chichester, UK.)
Tobler, W. R. (1970). A computer movie simulating urban growth in the Detroit region. Economic Geography 46, 234–240.
| A computer movie simulating urban growth in the Detroit region.Crossref | GoogleScholarGoogle Scholar |
Tonkin, Z., King, A. J., and Mahoney, J. (2008). Effects of flooding on recruitment and dispersal of the southern pygmy perch (Nannoperca australis) at a Murray River floodplain wetland. Ecological Management & Restoration 9, 196–201.
| Effects of flooding on recruitment and dispersal of the southern pygmy perch (Nannoperca australis) at a Murray River floodplain wetland.Crossref | GoogleScholarGoogle Scholar |
Treadwell, S., and Hardwick, R. (2003). ‘Review of Habitat Associations of Native Fish in the Murray–Darling Basin. Murray–Darling Basin Commission Project R2105.’ (Sinclair Knight Merz: Melbourne.)
Unmack, P. J. (2001). Biogeography of Australian freshwater fishes. Journal of Biogeography 28, 1053–1089.
| Biogeography of Australian freshwater fishes.Crossref | GoogleScholarGoogle Scholar |
van Dijk, A. I. J., Beck, H. E., Crosbie, R. S., de Jeu, R. A. M., Liu, Y. Y., Podger, G. M., Timbal, B., and Viney, N. R. (2013). The millennium drought in southeast Australia (2001–2009): natural and human causes and implications for water resources, ecosystems, economy, and society. Water Resources Research 49, 1040–1057.
| The millennium drought in southeast Australia (2001–2009): natural and human causes and implications for water resources, ecosystems, economy, and society.Crossref | GoogleScholarGoogle Scholar |
Vargas, J. M., Real, R., and Guerrero, J. C. (1998). Biogeographical regions of the Iberian Peninsula based on freshwater fish and amphibian distributions. Ecography 21, 371–382.
| Biogeographical regions of the Iberian Peninsula based on freshwater fish and amphibian distributions.Crossref | GoogleScholarGoogle Scholar |
Vörösmarty, C. J., McIntyre, P., Gessner, B. M. O., Dudgeon, D., Prusevich, A., Green, P., Glidden, S., Bunn, S. E., Sullivan, C. A., Reidy Liermann, C., and Davies, P. M. (2010). Global threats to human water security and river biodiversity. Nature 467, 555–561.
| Global threats to human water security and river biodiversity.Crossref | GoogleScholarGoogle Scholar | 20882010PubMed |
Wells, F., Metzeling, L., and Newall, P. (2002). Macroinvertebrate regionalisation for use in the management of aquatic ecosystems in Victoria, Australia. Environmental Monitoring and Assessment 74, 271–294.
| Macroinvertebrate regionalisation for use in the management of aquatic ecosystems in Victoria, Australia.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DC%2BD383htFakuw%3D%3D&md5=c92b52c208b83f7311c2ba43a0d1278cCAS | 11944800PubMed |
Xu, T., and Hutchinson, M. (2013). New developments and application in the ANUCLIM spatial climatic and bioclimatic modelling package. Environmental Modelling & Software 40, 267–279.
| New developments and application in the ANUCLIM spatial climatic and bioclimatic modelling package.Crossref | GoogleScholarGoogle Scholar |