Evidence from molecules and morphology expands Podonomopsis Brundin (Diptera : Chironomidae : Podonominae) to include ‘genus Chile’
Peter S. Cranston A C and Matt Krosch BA Evolution, Ecology & Genetics, Research School of Biology, Australian National University, Canberra, ACT 2601, Australia.
B School of Earth, Environmental and Biological Sciences, Queensland University of Technology, Brisbane, Qld 4001, Australia.
C Corresponding author. Email: pscranston@gmail.com
Invertebrate Systematics 29(6) 610-627 https://doi.org/10.1071/IS15018
Submitted: 26 May 2015 Accepted: 16 October 2015 Published: 22 December 2015
Abstract
The informal taxon ‘genus Chile’ of Brundin, based solely on pupal exuviae of a podonomine Chironomidae, has remained inadequately known for half a century. New collections reveal life associations, and provide molecular data to hypothesise a precise phylogenetic placement in the austral Podonominae. A densely sampled molecular phylogeny based on two nuclear and one mitochondrial DNA markers shows ‘genus Chile’ to be the sister group to Podonomopsis Brundin, 1966. Within Podonomopsis a clade of South American species is sister to all Australian species. We discuss how to rank such a sister group taxon and treat ‘genus Chile’ as a new subgenus Araucanopsis, subg. nov. with the new species, Podonomopsis (Araucanopsis) avelasse, sp. nov. from Chile and Argentina as genotype of the monotypic subgenus. We describe P. (A.) avelasse in all stages and provide an expanded diagnosis and description of Podonomopsis to include Araucanopsis. A dated biogeographic hypothesis (chronogram) infers the most recent common ancestor (tmcra) of expanded Podonomopsis at 95 million years ago (Mya) (68–122 Mya 95% highest posterior density), ‘core’ Podonomopsis at 83 Mya (58–108) and Australian Podonomopsis at 65 Mya (44–87). All dates are before the South America–Australia geological separation through Antarctica, supporting previous conclusions that the taxon distribution is ‘Gondwanan’ in origin. Podonomopsis, even as expanded here, remains unknown from New Zealand or elsewhere on extant Zealandia.
http://zoobank.org/urn:lsid:zoobank.org:act:B242009B-0CEF-41CA-8C78-17B9D3B57025
Additional keywords: biogeography, Gondwana, Insecta, phylogenetics, Podonominae, rank, taxonomy.
References
Avise, J. C., and Johns, G. C. (1999). Proposal for a standardized temporal scheme of biological classification for extant species. Proceedings of the National Academy of Sciences of the United States of America 96, 7358–7363.| Proposal for a standardized temporal scheme of biological classification for extant species.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK1MXltVOru7k%3D&md5=07668c6fdf752d9f376f7c06f1cd8353CAS | 10377419PubMed |
Boothroyd, I., and Cranston, P. S. (1999). The ‘ice worm’ – the immature stages, phylogeny and biology of the glacier midge Zelandochlus (Diptera: Chironomidae). Aquatic Insects 21, 303–316.
| The ‘ice worm’ – the immature stages, phylogeny and biology of the glacier midge Zelandochlus (Diptera: Chironomidae).Crossref | GoogleScholarGoogle Scholar |
Brundin, L. (1965). On the real nature of transantarctic relationships. Evolution 19, 496–505.
| On the real nature of transantarctic relationships.Crossref | GoogleScholarGoogle Scholar |
Brundin, L. (1966). Transantarctic relationships and their significance, as evidenced by chironomid midges with a monograph of the subfamilies Podonominae and Aphroteniinae and the austral Heptagyiae. Kungliga Svenska Vetenskapsakademiens Handlingar 11, 1–472.
Brundin, L. (1972). Phylogenetics and biogeography. Systematic Zoology 21, 69–79.
| Phylogenetics and biogeography.Crossref | GoogleScholarGoogle Scholar |
Brundin, L. (1976). A Neocomian chironomid and Podonominae-Aphroteniinae (Diptera) in the light of phylogenetics and biogeography. Zoologica Scripta 5, 139–160.
| A Neocomian chironomid and Podonominae-Aphroteniinae (Diptera) in the light of phylogenetics and biogeography.Crossref | GoogleScholarGoogle Scholar |
Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17, 540–552.
| Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXisVSgt7g%3D&md5=56e52cdc45a6782c195036d7af89ad92CAS | 10742046PubMed |
Cranston, P. S. (2000). August Thienemann’s influence on modern chironomidology – an Australian perspective. Internationale Vereinigung für Theoretische und Angewandte Limnologie Verhandlungen 27, 278–283.
Cranston, P. S., and Edward, D. H. D. (1998). Afrochlus Freeman: an African Gondwanan midge and the phylogeny of the Podonominae (Diptera: Chironomidae). Systematic Entomology 23, 77–90.
| Afrochlus Freeman: an African Gondwanan midge and the phylogeny of the Podonominae (Diptera: Chironomidae).Crossref | GoogleScholarGoogle Scholar |
Cranston, P. S., and Krosch, M. N. (2015). DNA sequences and austral taxa indicate generic synonymy of Paratrichocladius Santos-Abreu with Cricotopus Wulp (Diptera: Chironomidae). Systematic Entomology 40, 719–732.
| DNA sequences and austral taxa indicate generic synonymy of Paratrichocladius Santos-Abreu with Cricotopus Wulp (Diptera: Chironomidae).Crossref | GoogleScholarGoogle Scholar |
Cranston, P. S., Edward, D. H. D., and Colless, D. H. (1987). Archaeochlus Brundin: a midge out of time (Diptera: Chironomidae). Systematic Entomology 12, 313–334.
| Archaeochlus Brundin: a midge out of time (Diptera: Chironomidae).Crossref | GoogleScholarGoogle Scholar |
Cranston, P. S., Hardy, N. B., Morse, G. E., Puslednik, L., and McCluen, S. R. (2010). When molecules and morphology concur: the ‘Gondwanan’ midges (Diptera: Chironomidae). Systematic Entomology 35, 636–648.
| When molecules and morphology concur: the ‘Gondwanan’ midges (Diptera: Chironomidae).Crossref | GoogleScholarGoogle Scholar |
Cranston, P. S., Hardy, N. B., and Morse, G. E. (2012). A dated molecular phylogeny for the Chironomidae (Diptera). Systematic Entomology 37, 172–188.
| A dated molecular phylogeny for the Chironomidae (Diptera).Crossref | GoogleScholarGoogle Scholar |
Drummond, A. J., Ho, S. Y. W., Phillips, M. J., and Rambaut, A. (2006). Relaxed phylogenetics and dating with confidence. PLoS Biology 4, e88.
| Relaxed phylogenetics and dating with confidence.Crossref | GoogleScholarGoogle Scholar | 16683862PubMed |
Drummond, A. J., Suchard, M. A., Xie, D., and Rambaut, A. (2012). Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29, 1969–1973.
| Bayesian phylogenetics with BEAUti and the BEAST 1.7.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XhtFagu7fO&md5=1c9adaeb5bffc28a95d76bbdca0ae4f2CAS | 22367748PubMed |
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32, 1792–1797.
| MUSCLE: multiple sequence alignment with high accuracy and high throughput.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2cXisF2ks7w%3D&md5=5e5a51a2851e50039acd3b34601cddcbCAS | 15034147PubMed |
Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41, 95–98.
| 1:CAS:528:DC%2BD3cXhtVyjs7Y%3D&md5=f1de1a25ccd9666b647db6a2245a60cfCAS |
Hennig, W. (1966). ‘Phylogenetic Systematics.’ (Illinois Natural History Survey: Urbana, IL.)
Holt, B. G., and Jønsson, K. A. (2014). Reconciling hierarchical taxonomy with molecular phylogenies. Systematic Biology 63, 1010–1017.
| Reconciling hierarchical taxonomy with molecular phylogenies.Crossref | GoogleScholarGoogle Scholar | 25139888PubMed |
Huelsenbeck, J. P., and Ronquist, F. (2001). MrBayes: Bayesian inference of phylogeny. Bioinformatics 17, 754–755.
| MrBayes: Bayesian inference of phylogeny.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DC%2BD3MvotV2isw%3D%3D&md5=cd4de43d633ceeff10f03392cbc4da97CAS | 11524383PubMed |
Krosch, M. N., and Cranston, P. S. (2012). Non-destructive DNA extraction from Chironomidae, including fragile pupal exuviae, extends analysable collections and enhances vouchering. Chironomus 25, 22–27.
Krosch, M. N., and Cranston, P. S. (2013). Not drowning, (hand)waving? Molecular phylogenetics, biogeography and evolutionary tempo of the ‘gondwanan’ midge Stictocladius Edwards (Diptera: Chironomidae). Molecular Phylogenetics and Evolution 68, 595–603.
| Not drowning, (hand)waving? Molecular phylogenetics, biogeography and evolutionary tempo of the ‘gondwanan’ midge Stictocladius Edwards (Diptera: Chironomidae).Crossref | GoogleScholarGoogle Scholar |
Krosch, M. N., Baker, A. M., Mather, P. B., and Cranston, P. S. (2011). Systematics and biogeography of the Gondwanan Orthocladiinae (Diptera: Chironomidae). Molecular Phylogenetics and Evolution 59, 458–468.
| Systematics and biogeography of the Gondwanan Orthocladiinae (Diptera: Chironomidae).Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DC%2BC3Mvms1CltA%3D%3D&md5=7e91abe947c96be62cd4aa4b6ed3a538CAS | 21402162PubMed |
Krosch, M. N., Cranston, P. S., Baker, A. M., and Vink, S. (2015). Molecular data extend Australian Cricotopus midge (Chironomidae) species diversity, and provide a phylogenetic hypothesis for biogeography and freshwater monitoring. Zoological Journal of the Linnean Society , .
| Molecular data extend Australian Cricotopus midge (Chironomidae) species diversity, and provide a phylogenetic hypothesis for biogeography and freshwater monitoring.Crossref | GoogleScholarGoogle Scholar |
Krzeminski, W., and Jarzembowski, E. (1999). Aenne triassica sp. n., the oldest representatives of the family Chironomidae (Insecta: Diptera). Polskie Pismo Entomologiczne 68, 445–449.
Krzeminski, W., Krzeminska, E., and Papier, F. (1994). Grauvogelia arzvilleriana sp. n. – the oldest Diptera species (lower/middle Triassic of France). Acta Zoologica Cracoviensia 37, 95–99.
Miller, M. A., Pfeiffer, W., and Schwartz, T. (2010). Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In ‘Proceedings of the Gateway Computing Environments Workshop (GCE)’. pp. 1–8. (New Orleans, LA.)
Rambaut, A., and Drummond, A. J. (2014).Tracer v1.5. Available from http://beast.bio.ed.ac.uk/Tracer [Verified 21 October 2015]
Ronquist, F., and Huelsenbeck, J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572–1574.
| MrBayes 3: Bayesian phylogenetic inference under mixed models.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3sXntlKms7k%3D&md5=6c22440a111ffd7c39b671a54462b45bCAS | 12912839PubMed |
Sæther, O. A. (1977). Female genitalia in Chironomidae and other Nematocera: morphology, phylogenies, keys. Bulletin – Fisheries Research Board of Canada 197, 1–204.
Seredszus, F., and Wichard, W. (2007). Fossil chironomids (Insecta; Diptera) in Baltic amber. Paleontographica 279, 41–91.
Shapiro, B., Rambaut, A., and Drummond, A. J. (2006). Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Molecular Biology and Evolution 23, 7–9.
| Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2MXhtleqtLvP&md5=0217689fd2e090730ef6a8d148320c2aCAS | 16177232PubMed |
Siri, A., and Brodin, Y. (2014). Cladistic analysis of Rheochlus and related genera, with description of a new species (Diptera: Chironomidae: Podonominae). Acta Entomologica Musei Nationalis Pragae 54, 361–375.
Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688–2690.
| RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD28XhtFKlsbfI&md5=df50a1f20f2be0cbcb0dff3c135f1b17CAS | 16928733PubMed |
Thienemann, A. (1937). Podonominae, eine neue unterfamilie der chironomiden (Chironomiden aus Lappland I). Mit einem beitrag: Edwards, F.W.: On the European Podonominae (adult stage). Internationale Revue der Gesamten Hydrobiologie und Hydrographie 35, 65–112.
| Podonominae, eine neue unterfamilie der chironomiden (Chironomiden aus Lappland I). Mit einem beitrag: Edwards, F.W.: On the European Podonominae (adult stage).Crossref | GoogleScholarGoogle Scholar |
Yang, Z. (1996). Maximum-likelihood models for combined analyses of multiple sequence data. Journal of Molecular Evolution 42, 587–596.
| Maximum-likelihood models for combined analyses of multiple sequence data.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK28XjvVajsL0%3D&md5=fc431b6eccf9bbb7d165c2f5225679ceCAS | 8662011PubMed |