Analytical pitfalls when using inhibitors in specific nitrification assays
Guillaume Humbert A B D , Mathieu Sebilo A C , Marion Chorin B , Véronique Vaury A and Anniet M. Laverman BA Sorbonne Université, CNRS, INRAE, IRD, UPD, UPEC, Institute of Ecology and Environmental Sciences – Paris, iEES, 75005 Paris, France.
B Université de Rennes 1, Centre National de la Recherche Scientifique (CNRS), ECOBIO – UMR 6553, Université de Rennes, 35042 Rennes, France.
C Université de Pau et des Pays de l’Adour, E2S UPPA, IPREM (Institut des Sciences Analytiques et de Physico-Chimie pour l’Environnement et les Matériaux), 64000 Pau, France.
D Corresponding author. Email: g.humbert86@gmail.com
Environmental Chemistry 18(7) 295-299 https://doi.org/10.1071/EN21118
Submitted: 7 September 2021 Accepted: 13 October 2021 Published: 18 November 2021
Journal Compilation © CSIRO 2021 Open Access CC BY-NC-ND
Environmental context. Specific inhibitors of biological reactions in the nitrogen cycle can be used to determine the origin of reactive nitrogen species; these nitrogen species potentially degrade water quality or influence climate. However, inhibitors can potentially interfere with methods for the analysis of stable isotope ratios and concentrations of ammonium, nitrite and nitrate. The effect of this interference on several commonly used methods was investigated. These findings should help avoid the use of inappropriate analytical methods and improve data quality in studies of the nitrogen cycle.
Abstract. Characterisation of the reaction steps involved in nitrification can help determine the processes that produce potentially harmful environmental pollutants such as nitrite, nitrate and nitrous oxide (N2O). The use of nitrification inhibitors can uncouple the reactions and therefore assist in their mechanistic and isotopic characterisation. However, nitrification inhibitors can interfere with the methods for determining the concentrations and stable isotope ratios of ammonium, nitrite and nitrate. The interference of allylthiourea, hydrazine or sodium chlorate in colorimetric methods and stable isotope measurements were assessed. Ammonium concentrations were measured with the salicylate method. Nitrite and nitrate were measured with the Griess reaction, with nitrate first being reduced to nitrite with vanadium (III) chloride. For the stable isotope analysis, nitrite was reduced to N2O in a 1 : 1 sodium azide and acetic acid buffer solution; preceded, when necessary, by ammonium oxidation to nitrite by hypobromite or nitrate reduction to nitrite on an activated cadmium column. Sodium chlorate did not interfere with any of the analyses and none of the inhibitors interfered with the stable isotope ratios determination of nitrate. Allylthiourea interfered with ammonium and nitrate quantification. Both allylthiourea and hydrazine also clearly interfered in the determination of the nitrogen stable isotope ratio of ammonium, while only allylthiourea interfered in the determination of nitrogen and oxygen stable isotope ratios of nitrite. Although we suggest methods to overcome some of these interferences, our study demonstrated that the analytical methods used in combination with allylthiourea or hydrazine as nitrification inhibitors should be considered with caution when designing experiments.
Keywords: colorimetry, stable isotope, ammonium, nitrite, nitrate, allylthiourea, hydrazine, sodium chlorate.
References
Bédard C, Knowles R (1989). Physiology, biochemistry, and specific inhibitors of CH4, NH4+, and CO oxidation by methanotrophs and nitrifiers. Microbiological Reviews 53, 68–84.| Physiology, biochemistry, and specific inhibitors of CH4, NH4+, and CO oxidation by methanotrophs and nitrifiers.Crossref | GoogleScholarGoogle Scholar | 2496288PubMed |
Belser LW, Mays EL (1980). Specific inhibition of nitrite oxidation by chlorate and its use in assessing nitrification in soils and sediments. Applied and Environmental Microbiology 39, 505–510.
| Specific inhibition of nitrite oxidation by chlorate and its use in assessing nitrification in soils and sediments.Crossref | GoogleScholarGoogle Scholar | 16345525PubMed |
Bothe H, Ferguson SJ, Newton WE (2007). ‘Biology of the nitrogen cycle.’ (Elsevier: Amsterdam)
Caranto JD, Vilbert AC, Lancaster KM (2016). Nitrosomonas europaea cytochrome P460 is a direct link between nitrification and nitrous oxide emission. Proceedings of the National Academy of Sciences of the United States of America 113, 14704–14709.
| Nitrosomonas europaea cytochrome P460 is a direct link between nitrification and nitrous oxide emission.Crossref | GoogleScholarGoogle Scholar | 27856762PubMed |
Heil J, Liu S, Vereecken H, Brüggemann N (2015). Abiotic nitrous oxide production from hydroxylamine in soils and their dependence on soil properties. Soil Biology & Biochemistry 84, 107–115.
| Abiotic nitrous oxide production from hydroxylamine in soils and their dependence on soil properties.Crossref | GoogleScholarGoogle Scholar |
Hooper AB, Terry KR (1973). Specific inhibitors of ammonia oxidation in Nitrosomonas. Journal of Bacteriology 115, 480–485.
| Specific inhibitors of ammonia oxidation in Nitrosomonas.Crossref | GoogleScholarGoogle Scholar | 4725614PubMed |
Hynes RK, Knowles R (1983). Inhibition of chemoautotrophic nitrification by sodium chlorate and sodium chlorite: a reexamination. Applied and Environmental Microbiology 45, 1178–1182.
| Inhibition of chemoautotrophic nitrification by sodium chlorate and sodium chlorite: a reexamination.Crossref | GoogleScholarGoogle Scholar | 16346262PubMed |
Lam P, Lavik G, Jensen MM, van de Vossenberg J, Schmid M, Woebken D, Gutiérrez D, Amann R, Jetten MSM, Kuypers MMM (2009). Revising the nitrogen cycle in the Peruvian oxygen minimum zone. Proceedings of the National Academy of Sciences of the United States of America 106, 4752–4757.
| Revising the nitrogen cycle in the Peruvian oxygen minimum zone.Crossref | GoogleScholarGoogle Scholar | 19255441PubMed |
Lees H, Simpson JR (1957). The biochemistry of the nitrifying organisms. V. Nitrite oxidation by Nitrobacter. The Biochemical Journal 65, 297–305.
| The biochemistry of the nitrifying organisms. V. Nitrite oxidation by Nitrobacter.Crossref | GoogleScholarGoogle Scholar | 13403908PubMed |
McIlvin MR, Altabet MA (2005). Chemical conversion of nitrate and nitrite to nitrous oxide for nitrogen and oxygen isotopic analysis in freshwater and seawater. Analytical Chemistry 77, 5589–5595.
| Chemical conversion of nitrate and nitrite to nitrous oxide for nitrogen and oxygen isotopic analysis in freshwater and seawater.Crossref | GoogleScholarGoogle Scholar | 16131070PubMed |
Ngo TT, Phan APH, Yam CF, Lenhoff HM (1982). Interference in determination of ammonia with the hypochlorite-alkaline phenol method of Berthelot. Analytical Chemistry 54, 46–49.
| Interference in determination of ammonia with the hypochlorite-alkaline phenol method of Berthelot.Crossref | GoogleScholarGoogle Scholar |
Nicholas DJD, Jones OTGJ (1960). Oxidation of hydroxylamine in cell-free extracts of Nitrosomonas europaea. Nature 185, 512–514.
| Oxidation of hydroxylamine in cell-free extracts of Nitrosomonas europaea.Crossref | GoogleScholarGoogle Scholar |
Santoro AE, Casciotti KL (2011). Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and stable isotope fractionation. The ISME Journal 5, 1796–1808.
| Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and stable isotope fractionation.Crossref | GoogleScholarGoogle Scholar | 21562601PubMed |
Sebilo M, Mayer B, Nicolardot B, Pinay G, Mariotti A (2013). Long-term fate of nitrate fertilizer in agricultural soils. Proceedings of the National Academy of Sciences of the United States of America 110, 18185–18189.
| Long-term fate of nitrate fertilizer in agricultural soils.Crossref | GoogleScholarGoogle Scholar | 24145428PubMed |
Semaoune P, Sebilo M, Templier J, Derenne S (2012). Is there any isotopic fractionation of nitrate associated with diffusion and advection?. Environmental Chemistry 9, 158–162.
| Is there any isotopic fractionation of nitrate associated with diffusion and advection?.Crossref | GoogleScholarGoogle Scholar |
Tatari K, Gülay A, Thamdrup B, Albrechtsen H-J, Smets BF (2017). Challenges in using allylthiourea and chlorate as specific nitrification inhibitors. Chemosphere 182, 301–305.
| Challenges in using allylthiourea and chlorate as specific nitrification inhibitors.Crossref | GoogleScholarGoogle Scholar | 28505572PubMed |
Taylor AE, Zeglin LH, Dooley S, Myrold DD, Bottomley PJ (2010). Evidence for different contributions of archaea and bacteria to the ammonia-oxidizing potential of diverse Oregon soils. Applied and Environmental Microbiology 76, 7691–7698.
| Evidence for different contributions of archaea and bacteria to the ammonia-oxidizing potential of diverse Oregon soils.Crossref | GoogleScholarGoogle Scholar | 20889792PubMed |
Terada A, Sugawara S, Hojo K, Takeuchi Y, Riya S, Harper WF, Yamamoto T, Kuroiwa M, Isobe K, Katsuyama C, Suwa Y, Koba K, Hosomi M (2017). Hybrid nitrous oxide production from a partial nitrifying bioreactor: hydroxylamine interactions with nitrite. Environmental Science & Technology 51, 2748–2756.
| Hybrid nitrous oxide production from a partial nitrifying bioreactor: hydroxylamine interactions with nitrite.Crossref | GoogleScholarGoogle Scholar |
Tsikas D (2007). Analysis of nitrite and nitrate in biological fluids by assays based on the Griess reaction: Appraisal of the Griess reaction in the l-arginine/nitric oxide area of research. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences 851, 51–70.
| Analysis of nitrite and nitrate in biological fluids by assays based on the Griess reaction: Appraisal of the Griess reaction in the l-arginine/nitric oxide area of research.Crossref | GoogleScholarGoogle Scholar | 16950667PubMed |
Vitòria L, Otero N, Soler A, Canals A (2004). Fertilizer characterization: Isotopic data (N, S, O, C, and Sr). Environmental Science & Technology 38, 3254–3262.
| Fertilizer characterization: Isotopic data (N, S, O, C, and Sr).Crossref | GoogleScholarGoogle Scholar |
Xue D, Botte J, De Baets B, Accoe F, Nestler A, Taylor P, Van Cleemput O, Berglund M, Boeckx P (2009). Present limitations and future prospects of stable isotope methods for nitrate source identification in surface- and groundwater. Water Research 43, 1159–1170.
| Present limitations and future prospects of stable isotope methods for nitrate source identification in surface- and groundwater.Crossref | GoogleScholarGoogle Scholar | 19157489PubMed |
Zhang L, Altabet MA, Wu TX, Hadas O (2007). Sensitive measurement of NH4+ 15N/14N (δ15NH4+) at natural abundance levels in fresh and saltwaters. Analytical Chemistry 79, 5297–5303.
| Sensitive measurement of NH4+ 15N/14N (δ15NH4+) at natural abundance levels in fresh and saltwaters.Crossref | GoogleScholarGoogle Scholar | 17567102PubMed |