The Pythium–Fusarium root disease complex – an emerging constraint to irrigated maize in southern New South Wales
P. R. Harvey A C , R. A. Warren A and S. Wakelin BA CSIRO Entomology, PMB 2, Glen Osmond, SA 5064, Australia.
B CSIRO Land and Water, PMB 2, Glen Osmond, SA 5064, Australia.
C Corresponding author. Email: paul.harvey@csiro.au
Australian Journal of Experimental Agriculture 48(3) 367-374 https://doi.org/10.1071/EA06091
Submitted: 14 March 2006 Accepted: 27 August 2007 Published: 4 February 2008
Abstract
A pathogen-selective fungicide trial was established at a site with a history of continuous maize cultivation with stubble retention to assess the impacts of Pythium, Fusarium and Rhizoctonia root diseases on maize productivity. High soilborne populations of Pythium and Fusarium were detected at sowing, with no significant differences in their distributions across the site. Significant increases in Fusarium and Pythium isolates were recovered from maize rhizosphere soils after the first 12 weeks of crop growth. While no isolates of phytopathogenic Rhizoctonia were recovered from soil or maize roots, 63 and 100% of roots examined were colonised by Pythium and Fusarium spp., respectively. Fungicides were, therefore, ineffective in suppressing rhizosphere fungal populations and inhibiting root infection and disease development. As a result, there were no significant increases in crop establishment, early crop growth (biomass) or grain yields with any of the pathogen-selective treatments. DNA sequencing identified six Pythium and five Fusarium spp. from infected maize roots (internal transcribed spacer 5.8s rDNA) and rhizosphere soils (rDNA and translation elongation factor-1α). These species have previously been reported as saprophytes on crop residues and as components of a root-disease complex contributing to seedling damping-off and root and stem rots of maize. Growth responses of rotation crops grown in natural and sterilised continuous maize soil indicated that soilborne root pathogens significantly reduced biomass production of maize and wheat, but not Adzuki bean and canola. Fungal isolation frequencies from these crops implied host-mediated selection of Pythium but not Fusarium spp., the former showing a preference for and greater pathogenicity towards maize and wheat.
Altschul SF,
Madden TL,
Schäffer AA,
Zhang J,
Zheng Z,
Miller W, Lipman DJ
(1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25, 3389–3402.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
PubMed |
Backhouse D, Burgess LW
(2002) Climatic analysis of the distribution of Fusarium graminearum, F. pseudograminearum and F. culmorum on cereals in Australia. Australasian Plant Pathology 31, 321–327.
| Crossref | GoogleScholarGoogle Scholar |
Cook RJ
(2001) Management of wheat and barley diseases in modern farming systems. Australasian Plant Pathology 30, 119–126.
| Crossref | GoogleScholarGoogle Scholar |
Cother EJ, Gilbert RL
(1992) Distribution of Pythium arrhenomanes in rice growing soils of southern New South Wales. Australasian Plant Pathology 21, 79–82.
| Crossref | GoogleScholarGoogle Scholar |
Dewan MM, Sivasithamparam K
(1988) Pythium species in roots of wheat and rye grass in Western Australia and their effect on root rot caused by Gaeumannomyces graminis var. tritici. Soil Biology & Biochemistry 20, 801–808.
| Crossref | GoogleScholarGoogle Scholar |
Duffy BK,
Ownley BH, Weller DM
(1997) Soil chemical and physical properties associated with suppression of take-all in wheat by Trichoderma koningii. Phytopathology 87, 1118–1124.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
Edel V,
Steinberg C,
Gautheron N, Alabouvette C
(1997) Populations of non-pathogenic Fusarium oxysporum associated with roots of four plant species compared to soil populations. Phytopathology 87, 693–697.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
Harman GE,
Howell CR,
Viterbo A,
Chet I, Lorito M
(2004) Trichoderma species – opportunistic, avirulent plant symbionts. National Review of Microbiology 2, 43–56.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
Harvey PR
(2004) Crop rotation could reduce Pythium root rot. Farming Ahead 154, 38–40.
Harvey PR,
Butterworth PJ,
Hawke BH, Pankhurst CE
(2000) Genetic variation among populations of Pythium irregulare in southern Australia. Plant Pathology 49, 619–627.
| Crossref | GoogleScholarGoogle Scholar |
Harvey PR,
Butterworth PJ,
Hawke BG, Pankhurst CE
(2001a) Genetic and pathogenic variation among cereal, medic and sub-clover isolates of Pythium irregulare. Mycological Research 105, 85–93.
| Crossref | GoogleScholarGoogle Scholar |
Harvey PR,
Langridge P, Marshall DR
(2001b) Genetic drift and host-mediated selection cause genetic differentiation among Gaeumannomyces graminis populations infecting cereals in southern Australia. Mycological Research 105, 927–935.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
Kong P,
Richardson PA,
Moorman GW, Hong C
(2004) Single-strand conformational polymorphism analysis of the ribosomal internal transcribed spacer 1 for rapid species identification within the genus Pythium. FEMS Microbiology Letters 240, 229–236.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
PubMed |
Martin FN, Loper JE
(1999) Soilborne plant diseases caused by Pythium spp. : ecology, epidemiology and prospects for biological control. Critical Reviews in Plant Sciences 18, 111–181.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
O’Donnell K,
Kistler HC,
Cigelnik E, Ploetz RC
(1998) Multiple evolutionary origins of the fungus causing panama-disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies. Proceedings of the National Academy of Sciences of the United States of America 95, 2044–2049.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
PubMed |
Otero JT,
Ackerman JD, Bayman P
(2004) Differences in mycorrhizal preferences between two tropical orchids. Molecular Ecology 13, 2393–2404.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
PubMed |
Pankhurst CE,
McDonald HJ, Hawke BH
(1995) Influence of tillage and crop rotation on the epidemiology of Pythium infections of wheat in a red-brown earth of South Australia. Soil Biology & Biochemistry 27, 1065–1073.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
Pankhurst CE,
Hawke BH, McDonald HJ
(1998) Role of root disease in the poor establishment of Medicago pastures after cereal cropping in South Australia. Plant Pathology 47, 749–758.
Pe ME,
Gianfranceshi L,
Taramino G,
Tarachini R,
Angelini P,
Dani M, Binelli G
(1993) Mapping quantitative trait loci (QTLs) for resistance to Gibberella zeae infection in maize. Molecular & General Genetics 241, 11–16.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
Ryder MH,
Warren RA,
Harvey PR,
Tang W,
Yang H,
Zhang X, Zhang B
(2005) Recent advances in biological control of soil-borne root diseases of wheat, vegetables, and cotton in China and Australia. Shandong Science 18, 1–8.
Ryley MJ,
Obst NR,
Irwin JAG, Drenth A
(1998) Changes in the racial composition of Phytophthora sojae in Australia between 1979 and 1996. Plant Disease 82, 1048–1054.
| Crossref | GoogleScholarGoogle Scholar |
Sewell GWF
(1981) Effects of Pythium species on the growth of apple and their possible role in replant disease. Annals of Applied Biology 97, 31–42.
Stack J
(1999) Common stalk rot disease of corn. Plant Disease 6, 1–8.
Summerell BA, Burgess LW
(1988) Stubble management practices and the survival of Fusarium graminearum group 1 in wheat stubble residues. Australasian Plant Pathology 17, 88–93.
| Crossref | GoogleScholarGoogle Scholar |
Van der Plaats-Niterink AJ
(1981) Monograph of the genus Pythium. Studies in Mycology 21, 1–242.
Wakelin SA,
Warren RA,
Harvey PR, Ryder MH
(2004) Phosphate solubilization by Penicillium spp. closely associated with wheat roots. Biology and Fertility of Soils 40, 36–43.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
Wang B,
Dale ML,
Kochman JK,
Allen SJ, Obst NR
(1999) Variations in soil populations of Fusarium oxysporum f. sp. vasinfectum as influenced by fertiliser application and growth of different crops. Australasian Plant Pathology 28, 174–181.
| Crossref | GoogleScholarGoogle Scholar |
Wang PH,
Wang YT, White JG
(2003) Species-specific PCR primers for Pythium developed from ribosomal ITS1 region. Letters in Applied Microbiology 37, 127–132.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
PubMed |
Yang DE,
Zhang CL, Wang YG
(2002) Review of maize stalk rot in China. Journal of Maize Science 1, 4.
Yang DE,
Zhang CL,
Zhang DS,
Jin DM,
Weng ML,
Chen SJ,
Nguyen H, Wang B
(2004) Genetic analysis and molecular mapping of maize (Zea mays L.) stalk rot resistance gene Rfg1. Theoretical and Applied Genetics 108, 706–711.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
PubMed |
Yergeau E,
Filion M,
Vujanovic V, St-Arnaud M
(2005) A PCR-denaturing gradient gel electrophoresis approach to assess Fusarium diversity in asparagus. Journal of Microbiological Methods 60, 143–154.
| Crossref | GoogleScholarGoogle Scholar |
CAS |
PubMed |
You MP,
Sivasithamparam K,
Riley IT, Barbetti MJ
(2000) The occurrence of root-infecting fungi and parasitic nematodes in annual Medicago species in Western Australian pastures. Australian Journal of Agricultural Research 51, 435–444.
| Crossref | GoogleScholarGoogle Scholar |