Register      Login
Crop and Pasture Science Crop and Pasture Science Society
Plant sciences, sustainable farming systems and food quality
RESEARCH ARTICLE

Genetic diversity and population structure of Eurasian populations of reed canarygrass: cytotypes, cultivars, and interspecific hybrids

Andrew R. Jakubowski A E , Randall D. Jackson A B , R. C. Johnson C , Jinguo Hu C and Michael D. Casler B D
+ Author Affiliations
- Author Affiliations

A Department of Agronomy, University of Wisconsin-Madison, 1575 Linden Dr., Madison, WI 53706, USA.

B DOE-Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, 1575 Linden Drive, Madison, WI 53706, USA.

C USDA-ARS, Western Regional Plant Introduction Station, Washington State University, Pullman, WA 99164, USA.

D USDA-ARS, U.S. Dairy Forage Research Center, 1925 Linden Drive, Madison, WI 53706, USA.

E Corresponding author. Email: Jakubowski@wisc.edu

Crop and Pasture Science 62(11) 982-991 https://doi.org/10.1071/CP11232
Submitted: 25 August 2011  Accepted: 16 November 2011   Published: 16 December 2011

Abstract

Reed canarygrass (Phalaris arundinacea L.) is an important forage crop and potential biofuel feedstock due to its wide environmental adaptation. The P. arundinacea ‘species complex’ is made up of three cytotypes, 2x, 4x, and 6x, with the 4x cytotype (P. arundinacea L.) most common. Active breeding programs have developed cultivars since the early 20th Century, but little is known about the genetics of the species complex. With the aid of DNA markers, we evaluated the population structure of 83 wild accessions collected throughout Eurasia, 24 cultivars, and the genetic relationship between 4x and 6x cytotypes. Seven subpopulations were present in Europe with a high level of admixture, suggesting that reed canarygrass germplasm has spread throughout Eurasia, either naturally or by humans for use in agriculture. Our results indicate that cultivars have incorporated much of the diversity found in wild populations, although modern low-alkaloid cultivars appear to come from a relatively small gene pool. We also found some evidence that the 6x cytotype is made up of three sub-genomes that are a combination of genomes present in 4x P. arundinacea and 4x P. aquatica, although the 6x cytotype does not appear to be a direct hybrid between the species.

Additional keywords: germplasm, Phalaris spp., plant genetic resources, plant breeding, ploidy, population genetics.


References

Adler PR, Del Grosso SJ, Parton WJ (2007) Life-cycle assessment of net greenhouse-gas flux for bioenergy cropping systems. Ecological Applications 17, 675–691.
Life-cycle assessment of net greenhouse-gas flux for bioenergy cropping systems.Crossref | GoogleScholarGoogle Scholar |

Allison DC, Starling JL (1963) Cytogenetic studies of the BC1 and BC2 generations from interspecific hybrids between Phalaris arundinacea and Phalaris tuberosa. Crop Science 3, 154–157.
Cytogenetic studies of the BC1 and BC2 generations from interspecific hybrids between Phalaris arundinacea and Phalaris tuberosa.Crossref | GoogleScholarGoogle Scholar |

Alway FJ (1931) Early trials and use of reed canary grass as a forage plant. Journal - American Society of Agronomy 23, 64–66.
Early trials and use of reed canary grass as a forage plant.Crossref | GoogleScholarGoogle Scholar |

Anderson D (1961) Taxonomy and distribution of the genus Phalaris. Iowa State Journal of Science 36, 1–96.

Anderson EC, Thompson EA (2002) A model-based method for identifying species hybrids using multilocus genetic data. Genetics 160, 1217–1229.

Baldini RM (1993) The genus Phalaris L. (Gramineae) in Italy. Webbia 47, 1–53.

Baldini RM (1995) Revision of the genus Phalaris L. (Gramineae). Webbia 49, 265–329.

Bellstedt DU, Pirie MD, Visser JC, de Villiers MJ, Gehrke B (2010) A rapid and inexpensive method for the direct PCR amplification of DNA from plants. American Journal of Botany 97, e65–e68.

Bhagwat SA, Willis KJ (2008) Species persistence in northerly glacial refugia of Europe: a matter of chance or biogeographical traits? Journal of Biogeography 35, 464–482.
Species persistence in northerly glacial refugia of Europe: a matter of chance or biogeographical traits?Crossref | GoogleScholarGoogle Scholar |

Brownstein M, Carpten J, Smith J (1996) Modulation of non-templated nucleotide addition by TaqDNA polymerase: primer modifications that facilitate genotyping. BioTechniques 20, 1004–1010.

Burvall J (1997) Influence of harvest time and soil type on fuel quality in reed canary grass (Phalaris arundinacea L.). Biomass and Bioenergy 12, 149–154.
Influence of harvest time and soil type on fuel quality in reed canary grass (Phalaris arundinacea L.).Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK2sXjtlWhtrc%3D&md5=294714146fff4fcfb6afc058cd76e9bdCAS |

Carlson IT, Oram RN, Surpenant J (1996) Reed canarygrass and other phalaris species. In ‘Cool-season forage grasses. Vol. 34’. Agronomy Monograph No. 34. (Eds LE Moser, DR Buxton, MD Casler) pp. 569–604. (American Society of Agronomy, Crop Science Society of America, Soil Science Society of America: Madison, WI)

Casler MD (2010) Genetics, breeding, and ecology of reed canarygrass. International Journal of Plant Breeding 4, 30–36.

Casler MD, Pedersen JF, Eizenga GC, Stratton SD (1996) Germplasm and cultivar development. In ‘Cool-season forage grasses. Vol. 34’. Monographs No. 34. (Eds LE Moser, DR Buxton, MD Casler) pp. 413–469. (Agronomy Society of America: Madison, WI)

Casler MD, Phillips MM, Krohn AL (2009a) DNA polymorphisms reveal geographic races of reed canarygrass. Crop Science 49, 2139–2148.
DNA polymorphisms reveal geographic races of reed canarygrass.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXhsFWjsr3K&md5=9e3a52deeca84adbfa411cc9458cbb8bCAS |

Casler MD, Cherney JH, Brummer EC (2009b) Biomass yield of naturalized populations and cultivars of reed canary grass. BioEnergy Research 2, 165–173.
Biomass yield of naturalized populations and cultivars of reed canary grass.Crossref | GoogleScholarGoogle Scholar |

Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14, 2611–2620.
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2MXmvF2qtrg%3D&md5=7c07ad3ce6c4ef672713769a7b535367CAS |

Ferreira V, Reynoso L, Szpiniak B, Grassi E (2002) Cytological analysis of the Phalaris arundinacea (L.) × Phalaris aquatica (L.) amphidiploid. Caryologia 55, 151–160.

Feuillet C, Leach JE, Rogers J, Schnable PS, Eversole K (2011) Crop genome sequencing: lessons and rationales. Trends in Plant Science 16, 77–88.
Crop genome sequencing: lessons and rationales.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3MXhvFKit7w%3D&md5=7d805dbdf0584328f06fb42e6e4d67c4CAS |

Fowler C, Hodgkin T (2004) Plant genetic resources for food and agriculture: assessing global availability. Annual Review of Environment and Resources 29, 143–179.
Plant genetic resources for food and agriculture: assessing global availability.Crossref | GoogleScholarGoogle Scholar |

Gifford ALS, Ferdy JB, Molofsky J (2002) Genetic composition and morphological variation among populations of the invasive grass, Phalaris arundinacea. Canadian Journal of Botany 80, 779–785.
Genetic composition and morphological variation among populations of the invasive grass, Phalaris arundinacea.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD38XntlSrs70%3D&md5=67fb9d1156708588647f4d034f21dec4CAS |

Harlan JR, deWet JMJ (1975) On Ö. Winge and a Prayer: The origins of polyploidy. Botanical Review 41, 361–390.
On Ö. Winge and a Prayer: The origins of polyploidy.Crossref | GoogleScholarGoogle Scholar |

Heuertz M, Fineschi S, Anzidei M, Pastorelli R, Salvini D, Paule L, Frascaria-Lacoste N, Hardy OJ, Vekemans X, Vendramin GG (2004) Chloroplast DNA variation and postglacial recolonization of common ash (Fraxinus excelsior L.) in Europe. Molecular Ecology 13, 3437–3452.
Chloroplast DNA variation and postglacial recolonization of common ash (Fraxinus excelsior L.) in Europe.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2cXhtVWkurjE&md5=468f6996c25fcc0af4a58120e7bbd9a0CAS |

Hewitt GM (1999) Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society. Linnean Society of London 68, 87–112.
Post-glacial re-colonization of European biota.Crossref | GoogleScholarGoogle Scholar |

Hewitt G (2000) The genetic legacy of the Quaternary ice ages. Nature 405, 907–913.
The genetic legacy of the Quaternary ice ages.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXks1Wmu78%3D&md5=3a19aab64b24a42efb9b560d1c2ef37dCAS |

Hoisington D, Khairallah M, Reeves T, Ribaut J-M, Skovmand B, Taba S, Warburton M (1999) Plant genetic resources: what can they contribute toward increased crop productivity? Proceedings of the National Academy of Sciences of the United States of America 96, 5937–5943.
Plant genetic resources: what can they contribute toward increased crop productivity?Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK1MXksFKltbY%3D&md5=420e23beae28e6712cd79f489383bcd3CAS |

Jakubowski AR, Casler MD, Jackson RD (2010) The benefits of harvesting wetland invaders for cellulosic biofuel: an ecosystem services perspective. Restoration Ecology 18, 789–795.
The benefits of harvesting wetland invaders for cellulosic biofuel: an ecosystem services perspective.Crossref | GoogleScholarGoogle Scholar |

Jakubowski AR, Casler MD, Jackson RD (2011) Has selection for improved agronomic traits made reed canarygrass invasive? PLoS ONE 6, e25757
Has selection for improved agronomic traits made reed canarygrass invasive?Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3MXhtlGqsLnN&md5=36f8c02930b9db7209f1fbe11ede6e18CAS |

Jenkin TJ, Sethi BL (1932) Phalaris arundinacea, Ph. tuberosa, their F1 hybrids and hybrid derivatives. Journal of Genetics 26, 1–36.
Phalaris arundinacea, Ph. tuberosa, their F1 hybrids and hybrid derivatives.Crossref | GoogleScholarGoogle Scholar |

Jones K (1959) Pasture grasses. In ‘Reports of the Welsh Plant Breeding Station. 1956–1958’. pp. 69–71. (University College Wales: Aberystwyth)

Lavergne S, Molofsky J (2004) Reed canary grass (Phalaris arundinacea) as a biological model in the study of plant invasions. Critical Reviews in Plant Sciences 23, 415–429.
Reed canary grass (Phalaris arundinacea) as a biological model in the study of plant invasions.Crossref | GoogleScholarGoogle Scholar |

Lavergne S, Molofsky J (2007) Increased genetic variation and evolutionary potential drive the success of an invasive grass. Proceedings of the National Academy of Sciences of the United States of America 104, 3883–3888.
Increased genetic variation and evolutionary potential drive the success of an invasive grass.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2sXjtlaisbo%3D&md5=7478ebd81cebdb8c0dd5080ba4af6eb0CAS |

Maurer DA, Lindig-Cisneros R, Werner KJ, Kercher S, Miller R, Zedler JB (2003) The replacement of wetland vegetation by reed canarygrass (Phalaris arundinacea). Ecological Research 21, 116–119.
The replacement of wetland vegetation by reed canarygrass (Phalaris arundinacea).Crossref | GoogleScholarGoogle Scholar |

McCouch S (2004) Diversifying selection in plant breeding. PLoS Biology 2, e347
Diversifying selection in plant breeding.Crossref | GoogleScholarGoogle Scholar |

McWilliam JR (1962) Interspecific hybridization in phalaris: hybrids between Phalaris tuberosa and the hexaploid race of Phalaris arundinacea. Australian Journal of Agricultural Research 13, 585–598.
Interspecific hybridization in phalaris: hybrids between Phalaris tuberosa and the hexaploid race of Phalaris arundinacea.Crossref | GoogleScholarGoogle Scholar |

McWilliam JR, Neal-Smith CA (1962) Tetraploid and hexaploid chromosome races of Phalaris arundinacea L. Australian Journal of Agricultural Research 13, 1–9.
Tetraploid and hexaploid chromosome races of Phalaris arundinacea L.Crossref | GoogleScholarGoogle Scholar |

Merigliano MF, Lesica P (1998) The native status of reed canarygrass (Phalaris arundinacea L.) in the Inland Northwest, USA. Natural Areas Journal 18, 223–230.

Peakall ROD, Smouse PE (2006) genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6, 288–295.
genalex 6: genetic analysis in Excel. Population genetic software for teaching and research.Crossref | GoogleScholarGoogle Scholar |

Petit RJ, Brewer S, Bordács S, Burg K, Cheddadi R, Coart E, Cottrell J, Csaikl UM, van Dam B, Deans JD, Espinel S, Fineschi S, Finkeldey R, Glaz I, Goicoechea PG, Svejgaard Jensen J, König AO, Lowe AJ, Flemming Madsen S, Mátyás G, Munro RC, Popescu F, Slade D, Tabbener H, de Vries SGM, Ziegenhagen B, de Beaulieu JL, Kremer A (2002) Identification of refugia and post-glacial colonisation routes of European white oaks based on chloroplast DNA and fossil pollen evidence. Forest Ecology and Management 156, 49–74.
Identification of refugia and post-glacial colonisation routes of European white oaks based on chloroplast DNA and fossil pollen evidence.Crossref | GoogleScholarGoogle Scholar |

Piper CV (1914) ‘Forage plants and their culture.’ (The MacMillan Company: New York)

Platt A, Horton M, Huang YS, Li Y, Anastasio AE, Wayan Mulyati N, Ågren J, Bossdorf O, Byers D, Donohue K, Dunning M, Holub EB, Hudson A, Le Corre V, Loudet O, Roux F, Warthmann N, Weigel N, Rivero L, Scholl R, Nordburg M, Bergelson J, Borevitz JO (2010) The scale of population structure in Arabidopsis thaliana. PLOS Genetics 6, e1000843
The scale of population structure in Arabidopsis thaliana.Crossref | GoogleScholarGoogle Scholar |

Porsild AE, Cody WJ (1980) ‘Vascular plants of Continental Northwest Territories, Canada.’ (National Museum of Natural Sciences, National Museums of Canada: Ottawa)

Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155, 945–959.

Quintanar A, Castroviejo S, Catalan P (2007) Phylogeny of the tribe Aveneae (Pooideae, Poaceae) inferred from plastid trnT-F and nuclear ITS sequences. American Journal of Botany 94, 1554–1569.
Phylogeny of the tribe Aveneae (Pooideae, Poaceae) inferred from plastid trnT-F and nuclear ITS sequences.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2sXhtFaksb3P&md5=3b1ea8c044ecf677627e505596613661CAS |

Ramsey J, Schemske DW (1998) Pathways, mechanisms, and rates of polyploid formation in flowering plants. Annual Review of Ecology and Systematics 29, 467–501.
Pathways, mechanisms, and rates of polyploid formation in flowering plants.Crossref | GoogleScholarGoogle Scholar |

Reinhardt Adams C, Galatowitsch SM (2005) Phalaris arundinacea (reed canary grass): Rapid growth and growth pattern in conditions approximating newly restored wetlands. Ecoscience 12, 569–573.
Phalaris arundinacea (reed canary grass): Rapid growth and growth pattern in conditions approximating newly restored wetlands.Crossref | GoogleScholarGoogle Scholar |

Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nature Biotechnology 18, 233–234.
An economic method for the fluorescent labeling of PCR fragments.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXhtVOksbk%3D&md5=28b5c3643a77fb608e12d2b7c5f0527dCAS |

Soltis DE, Soltis PS, Tate JA (2004) Advances in the study of polyploidy since plant speciation. New Phytologist 161, 173–191.
Advances in the study of polyploidy since plant speciation.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2cXmsVWluw%3D%3D&md5=ec4e9e8441c723c73720473631b2472eCAS |

Štorchová H, Hrdlickova R, Chrtek J, Tetera M, Fitze D, Fehrer J (2000) An improved method of DNA isolation from plants collected in the field and conserved in NACL/CTAB solution. Taxon 49, 79–84.
An improved method of DNA isolation from plants collected in the field and conserved in NACL/CTAB solution.Crossref | GoogleScholarGoogle Scholar |

Wilkins PS, Hughes HD (1932) Agronomic trials with reed canary grass. Journal - American Society of Agronomy 24, 18–28.
Agronomic trials with reed canary grass.Crossref | GoogleScholarGoogle Scholar |

Zalapa JE, Price DL, Kaeppler SM, Tobias CM, Okada M, Casler MD (2011) Hierarchical classification of switchgrass genotypes using SSR and chloroplast sequences: ecotypes, ploidies, gene pools, and cultivars. Theoretical and Applied Genetics 122, 805–817.
Hierarchical classification of switchgrass genotypes using SSR and chloroplast sequences: ecotypes, ploidies, gene pools, and cultivars.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3MXhvVCmurw%3D&md5=2f23e21f6e1532f3c8d055aaaee8cb36CAS |

Zamir D (2001) Improving plant breeding with exotic genetic libraries. Nature Reviews. Genetics 2, 983–989.
Improving plant breeding with exotic genetic libraries.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD38Xmt1WgsrY%3D&md5=49b2cd9fb6488d644d501ca218793bdaCAS |

Zedler JB, Kercher S (2004) Causes and consequences of invasive plants in wetlands: opportunities, opportunists, and outcomes. Critical Reviews in Plant Sciences 23, 431–452.
Causes and consequences of invasive plants in wetlands: opportunities, opportunists, and outcomes.Crossref | GoogleScholarGoogle Scholar |