A Simple Paper-Based Lab-on-a-Chip for the Detection of a Highly Pathogenic Strain of Porcine Reproductive and Respiratory Syndrome Virus
Piyasak Chaumpluk A C and Annop Suriyasomboon BA Laboratory of Plant Transgenic Technology and Biosensor, Department of Botany, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.
B Department of Animal Husbandry, Faculty of Veterinary Science, Chulalongkorn University, Bangkok 10330, Thailand.
C Corresponding author. Email: piyasakcha@yahoo.com
Australian Journal of Chemistry 67(10) 1434-1440 https://doi.org/10.1071/CH14222
Submitted: 9 April 2014 Accepted: 6 July 2014 Published: 30 July 2014
Abstract
A paper-based laboratory-on-a-chip assay for the rapid detection of a highly pathogenic strain of porcine reproductive and respiratory syndrome virus (HP-PRRSV) was developed for the first time. The single-unit chip was simply fabricated using Whatman filter paper and plastic lamination. The chip measured 2.5 × 3.0 cm2 and was divided into two parts, one for nucleic acid amplification and the other for signal detection. The HP-PRRSV assay was performed by specific ORF I Nsp 2 gene amplification via an isothermal reverse transcription loop-mediated DNA amplification platform, whereas the cDNA signal detection was performed by visual observation of colorimetric changes in blue silver nanoplates (AgNPls). Positive results caused non-aggregation of the blue AgNPls on the detection pad, whereas negative results induced colorimetric changes in the AgNPls from blue to colourless on the pad. The assay had a limit of detection of 100 copies of the target Nsp 2 gene and high specificity for other types of infectious viruses. The assay required only one hour to complete. This work demonstrates a simple and rapid assay for viruses using a simple, low-cost, paper-based chip.
References
[1] S. Banoo, D. Bell, P. Bossuyt, A. Herring, D. Mabey, F. Poole, P. G. Smith, N. Sriram, C. Wongsrichanalai, R. Linke, R. O’Brien, M. Perkins, J. Cunningham, P. Matsoso, C. M. Nathanson, P. Olliaro, R. W. Peeling, A. Ramsay, Nat. Rev. Microbiol. 2010, S16.| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3cXhsVansLbI&md5=56e447bad99c5a1a986a1636245b6125CAS |
[2] G. A. Storch, Essentials of Diagnostic Virology 2000 (Churchill Livingstone Inc.: New York, NY)
[3] R. Kfir, B. Genthe, Water Sci. Technol. 1993, 27, 243.
[4] W. Saitoh-Inagawa, A. Oshima, K. Aoki, N. Itoh, K. Isobe, E. Uchio, S. Ohno, H. Nakajima, K. Hata, H. Ishiko, J. Clin. Microbiol. 1996, 34, 2113.
| 1:CAS:528:DyaK28Xlslynsbc%3D&md5=123a16ce8af321db59109a3b29d71e83CAS | 8862567PubMed |
[5] L. Andreoletti, M. Lesay, A. Deschildre, V. Lambert, A. Dewilde, P. Wattre, J. Med. Virol. 2000, 61, 341.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXktlalsL8%3D&md5=d67be57388576496103cd751e3bcffd5CAS | 10861643PubMed |
[6] L. Liolios, A. Jenney, D. Spelman, T. Kotsimbos, M. Catton, S. Wesselingh, J. Clin. Microbiol. 2001, 39, 2779.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3MXmsVOnu78%3D&md5=fe3f13937038efc202e8ff40067139a9CAS | 11473991PubMed |
[7] A. Martinez, S. T. Phillips, M. Butte, G. M. Whitesides, Angew. Chem. Int. Ed. 2007, 46, 1318.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2sXit1als7s%3D&md5=a7f60bd75a68090e57910dc9297152c8CAS |
[8] D. B. Gazda, J. S. Fritz, M. D. Porter, Anal. Chim. Acta 2004, 508, 53.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2cXhsFektLw%3D&md5=1cd9da373b1689f181e3d8296bfff626CAS |
[9] K. Abe, K. Suzuki, D. Citterio, Anal. Chem. 2008, 80, 6928.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1cXpslentrc%3D&md5=678e3ecc0f5daac2ecce4318cecf3409CAS | 18698798PubMed |
[10] D. A. Bruzewicz, M. Reches, G. M. Whitesides, Anal. Chem. 2008, 80, 3387.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1cXjtVCqt7g%3D&md5=bdebc7b4dc3a98eb2b02ccfd0571758aCAS | 18333627PubMed |
[11] X. Li, J. Tian, G. Garnier, W. Shen, Colloids Surf., B 2010, 76, 564.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3cXhslWrtbw%3D&md5=ca643a893154be63f18f214a47e8f7f0CAS |
[12] W. K. T. Coltro, D. P. de Jesus, J. A. F. da Silva, C. L. do lago, E. Carrilho, Electrophoresis 2010, 31, 2487.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3cXptlGgtrc%3D&md5=9f9f3fcda29aecec1fd99f467295d7c8CAS |
[13] Y. Lu, W. Shi, L. Jiang, J. Qin, B. Lin, Electrophoresis 2009, 30, 1497.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXlslGhu7s%3D&md5=74adef3fc64e73ba462fcbad7e112ad3CAS | 19340829PubMed |
[14] J. Nie, Y. Zhang, L. Lin, C. Zhou, S. Li, L. Zhang, J. Li, Anal. Chem. 2012, 84, 6331.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XhtVOjsrnN&md5=d765aeda32413bea6f4107df13dfea8bCAS | 22881397PubMed |
[15] M. M. Mentele, J. Cunningham, K. Koehler, J. Volckens, C. S. Henry, Anal. Chem. 2012, 84, 4474.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XltlagtL0%3D&md5=3183576b14965c475610c8afefa26e75CAS | 22489881PubMed |
[16] T. Notomi, H. Okayama, H. Masubuchi, T. Yonekawa, K. Watanabe, N. Amino, T. Hase, Nucleic Acids Res. 2000, 28, e63.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXmtlKqsr8%3D&md5=0150893e5bf49f336293345502d4ed1fCAS | 10871386PubMed |
[17] M. Parida, S. Sannarangaiah, D. P. Kumar, P. V. L. Rao, K. Morita, Rev. Med. Virol. 2008, 18, 407.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1cXhsFWrt7jK&md5=e9f2d6ebfb58e9f305366a83d4f6c4faCAS | 18716992PubMed |
[18] T. Nakayama, Y. Kurosawa, S. Furui, K. Kerman, M. Kobayashi, S. R. Rao, Y. Yonezawa, K. Nakano, A. Hino, S. Yamamura, Y. Takamura, E. Tamiya, Anal. Bioanal. Chem. 2006, 386, 1327.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD28XhtFegtL%2FO&md5=1ce9fdca6c127072ca9dc1a4783d479aCAS | 16896609PubMed |
[19] K. Wernike, B. Hoffmann, M. Dauber, E. Lange, H. Schirrmeier, M. Beer, PLoS ONE 2012, 7, e38251.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XpvVyis7c%3D&md5=b0d8ff57b4fef691827585ffd09584c3CAS | 22768042PubMed |
[20] P. Chaumpluk, P. Chaiprasart, Acta Hortic. 2012, 945, 205.
[21] M. Egholm, O. Buchard, L. Christensen, C. Behrens, S. M. Freier, D. A. Driver, R. H. Berg, S. K. Kim, B. Norden, P. E. Nielsen, Nature 1993, 365, 566.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK2cXntFOksQ%3D%3D&md5=4f8e2f8ce08de39e8e9b2ff908dccd3dCAS | 7692304PubMed |
[22] P. E. Nielsen, G. Haaima, Chem. Soc. Rev. 1997, 26, 73.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK2sXivFagt70%3D&md5=a7beeab4c2612fb83b9eda444d5f95f9CAS |
[23] R. Kanjanawarut, X. Su, Anal. Chem. 2009, 81, 6122.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXotVGkur0%3D&md5=b7f1f2b8d0898a38290120f9c2d6fb4dCAS | 20337394PubMed |
[24] S. K. Balasubramanian, L. Yang, L.-Y. L. Yung, C.-N. Ong, W.-Y. Ong, L. E. Yu, Biomaterials 2010, 31, 9023.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3cXht1egsLvN&md5=4f66e2bb4b65beebb71cb4c7feb0da07CAS | 20801502PubMed |
[25] U. Kreibig, L. Genzel, Surf. Sci. 1985, 156, A330.
| Crossref | GoogleScholarGoogle Scholar |
[26] J. Sambrook, E. F. Fritsch, T. Maniatis, Molecular Cloning: A Laboratory Manual 1989 (Cold Spring Harbor Laboratory Press: New York, NY).
[27] H. Kuribara, Y. Shindo, T. Matsuoka, K. Takubo, S. Futo, N. Aoki, T. Hirao, H. Akiyama, Y. Goda, M. Toyoda, A. Hino, J. AOAC Int. 2002, 85, 1077.
| 1:CAS:528:DC%2BD38XnsFekt7k%3D&md5=4faaf34fb5e6249ae6a3579f8d45e51aCAS | 12374407PubMed |
[28] D. A. Braasch, C. J. Nulf, D. R. Corey, Synthesis and Purification of Peptide Nucleic Acids. Current Protocols in Nucleic Acid Chemistry 2002 (Wiley: Hoboken, NJ).
[29] T. Parnklang, C. Lertvachirapaiboon, P. Pienpinijtham, K. Wongravee, C. Thammacharoen, S. Ekgasit, RSC Adv. 2013, 3, 12886.
| Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3sXhtFSitbrP&md5=a5acd6be5dd3c87c24f60521f1e458deCAS |