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Australian Journal of Botany Australian Journal of Botany Society
Southern hemisphere botanical ecosystems
RESEARCH ARTICLE

Phylogenetic diversity and conservation of rainforests in the Sunshine Coast region, Queensland, Australia

Liam Scanlan A , William J. F. McDonald B and Alison Shapcott A C
+ Author Affiliations
- Author Affiliations

A GeneCology Research Centre; Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Maroochydore, Qld 4558, Australia.

B Queensland Herbarium, Queensland Department of Environment and Science, Brisbane Botanic Gardens, Mt Coot-tha Road, Toowong, Qld 4066, Australia.

C Corresponding author. Email: ashapcot@usc.edu.au

Australian Journal of Botany 66(7) 518-530 https://doi.org/10.1071/BT18118
Submitted: 8 June 2018  Accepted: 11 October 2018   Published: 1 November 2018

Abstract

The subtropical rainforests of South East Queensland are relatively understudied but their importance for conservation has recently been highlighted, with the Sunshine Coast region identified as an area of high diversity, second to the Border Ranges. We measured phylogenetic diversity at a fine scale to identify areas of high diversity and dissimilarity across the Sunshine Coast, within the Forest of East Australia biodiversity hotspot. Edaphic and climatic influences were incorporated in the analysis to test their relevance to diversity in the region, and to aid the identification of local diversity hotspots. The Sunshine Coast was found to be phylogenetically even overall and had a high proportion of even sites (91 out of 109), consistent with the identification of refugia at a larger scale. The Blackall Range was identified as a local centre of diversity but it has been extensively cleared. Contrary to expectation, coastal lowland sites were phylogenetically even, suggesting potential localised stability or strong connectivity to refugia. These results reiterate the high conservation value of the region in general, particularly for the remnant areas of rainforest on the Blackall Range.

Additional keywords: conservation, diversity, DNA barcoding, geology, refugia, rainforest.


References

Accad A, Neldner VJ (2015) ‘Remnant regional ecosystem vegetation in Queensland, ánalysis 1997–2013.’ (Queensland Department of Science, Information Technology and Innovation: Brisbane)

Ashcroft MB, Chisholm LA, French KO (2008) The effect of exposure on landscape scale soil surface temperatures and species distribution models. Landscape Ecology 23, 211–225.
The effect of exposure on landscape scale soil surface temperatures and species distribution models.Crossref | GoogleScholarGoogle Scholar |

Baltzer JL, Davies SJ, Bunyavejchewin S, Noor NSM (2008) The role of desiccation tolerance in determining tree species distributions along the Malay–Thai Peninsula. Functional Ecology 22, 221–231.
The role of desiccation tolerance in determining tree species distributions along the Malay–Thai Peninsula.Crossref | GoogleScholarGoogle Scholar |

Baur GN (1957) Nature and distribution of rain-forests in New South Wales. Australian Journal of Botany 5, 190–233.
Nature and distribution of rain-forests in New South Wales.Crossref | GoogleScholarGoogle Scholar |

Bellard C, Leclerc C, Hoffmann BD, Courchamp F (2016) Vulnerability to climate change and sea-level rise of the 35th biodiversity hotspot, the Forests of East Australia. Environmental Conservation 43, 79–89.
Vulnerability to climate change and sea-level rise of the 35th biodiversity hotspot, the Forests of East Australia.Crossref | GoogleScholarGoogle Scholar |

Bradshaw CJA (2012) Little left to lose: deforestation and forest degradation in Australia since European colonization. Journal of Plant Ecology 5, 109–120.
Little left to lose: deforestation and forest degradation in Australia since European colonization.Crossref | GoogleScholarGoogle Scholar |

Bray JR, Curtis JT (1957) An ordination of the upland forest communities of southern Wisconsin. Ecological Monographs 27, 325–349.
An ordination of the upland forest communities of southern Wisconsin.Crossref | GoogleScholarGoogle Scholar |

Burbidge NT (1960) The phytogeography of the Australian region. Australian Journal of Botany 8, 75–211.
The phytogeography of the Australian region.Crossref | GoogleScholarGoogle Scholar |

Butler D, Green RJ, Lamb D, McDonald W, Forster P (2007) Biogeography of seed‐dispersal syndromes, life‐forms and seed sizes among woody rain‐forest plants in Australia’s subtropics. Journal of Biogeography 34, 1736–1750.
Biogeography of seed‐dispersal syndromes, life‐forms and seed sizes among woody rain‐forest plants in Australia’s subtropics.Crossref | GoogleScholarGoogle Scholar |

Clarke KR, Gorley RN (2006) ‘PRIMER v6: User manual/tutorial.’ (PRIMER-E: Plymouth, UK)

Cohen BE (2012) The scenic rim of southeastern Queensland, Australia: a history of mid Cenozoic intraplate volcanism. Episodes 35, 103–109.

Costion CM, Edwards W, Ford AJ, Metcalfe DJ, Cross HB, Harrington MG, Richardson JE, Hilbert DW, Lowe AJ, Crayn DM (2015) Using phylogenetic diversity to identify ancient rain forest refugia and diversification zones in a biodiversity hotspot. Diversity & Distributions 21, 279–289.
Using phylogenetic diversity to identify ancient rain forest refugia and diversification zones in a biodiversity hotspot.Crossref | GoogleScholarGoogle Scholar |

Daly C (2006) Guidelines for assessing the suitability of spatial climate data sets. International Journal of Climatology 26, 707–721.
Guidelines for assessing the suitability of spatial climate data sets.Crossref | GoogleScholarGoogle Scholar |

Etherington R, Shapcott A (2014) Do habitat fragmentation and fire influence variation of plant species composition, structure and diversity within three regional ecosystems on the Sunshine Coast, Queensland, Australia? Australian Journal of Botany 62, 36–47.
Do habitat fragmentation and fire influence variation of plant species composition, structure and diversity within three regional ecosystems on the Sunshine Coast, Queensland, Australia?Crossref | GoogleScholarGoogle Scholar |

Faith DP (1992) Conservation evaluation and phylogenetic diversity. Biological Conservation 61, 1–10.
Conservation evaluation and phylogenetic diversity.Crossref | GoogleScholarGoogle Scholar |

Florence RG (1965) Some vegetation-soil relationships in the Blackall Range forests. Australian Forestry 29, 105–118.
Some vegetation-soil relationships in the Blackall Range forests.Crossref | GoogleScholarGoogle Scholar |

Forest F, Grenyer R, Rouget M, Davies TJ, Cowling RM, Faith DP, Balmford A, Manning JC, Procheş S, van der Bank M, Reeves G, Hedderson TAJ, Savolainen V (2007) Preserving the evolutionary potential of floras in biodiversity hotspots. Nature 445, 757–760.
Preserving the evolutionary potential of floras in biodiversity hotspots.Crossref | GoogleScholarGoogle Scholar |

Fridley JD (2009) Downscaling climate over complex terrain: high finescale (<1000 m) spatial variation of near-ground temperatures in a Montane forested landscape (Great Smoky Mountains). Journal of Applied Meteorology and Climatology 48, 1033–1049.
Downscaling climate over complex terrain: high finescale (<1000 m) spatial variation of near-ground temperatures in a Montane forested landscape (Great Smoky Mountains).Crossref | GoogleScholarGoogle Scholar |

Geological Survey of Queensland (2011) ‘Digital geoscience vector data. Queensland geological mapping (polygonised vector) digital data – detailed and regional.’ (Queensland Government: Brisbane)

Geoscience Australia (2015) ‘Digital elevation model (DEM) of Australia derived from LiDAR 5 Metre grid.’ (Commonwealth of Australia and Geoscience Australia: Canberra)

Hampe A, Rodríguez-Sánchez F, Dobrowski S, Hu FS, Gavin DG (2013) Climate refugia: from the Last Glacial Maximum to the twenty-first century. New Phytologist 197, 16–18.
Climate refugia: from the Last Glacial Maximum to the twenty-first century.Crossref | GoogleScholarGoogle Scholar |

Harden G, McDonald B, Williams J (2015a) ‘Rainforest trees and shrubs.’ (Gwen Harden Publishing: Nambucca Heads, NSW)

Harden G, Nicholson H, McDonald B, Nicholson N, Tame T, Williams J (2015b) ‘Rainforest plants of Australia.’ (Gwen Harden Publishing and Terania Rainforest Publishing: Nambucca Heads, NSW)

Hawkins BA, Field R, Cornell HV, Currie DJ, Guégan J-F, Kaufman DM, Kerr JT, Mittelbach GG, Oberdorff T, O’Brien EM, Porter EE, Turner JRG (2003) Energy, water, and broad-scale geographic patterns of species richness. Ecology 84, 3105–3117.
Energy, water, and broad-scale geographic patterns of species richness.Crossref | GoogleScholarGoogle Scholar |

Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A (2005) Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology 25, 1965–1978.
Very high resolution interpolated climate surfaces for global land areas.Crossref | GoogleScholarGoogle Scholar |

Howard MG, McDonald WJF, Forster PI, Kress WJ, Erickson D, Faith DP, Shapcott A (2016) Patterns of phylogenetic diversity of subtropical rainforest of the Great Sandy Region, Australia indicate long term climatic refugia. PLoS One 11, e0153565
Patterns of phylogenetic diversity of subtropical rainforest of the Great Sandy Region, Australia indicate long term climatic refugia.Crossref | GoogleScholarGoogle Scholar |

Hutley LB, Doley D, Yates DJ, Boonsaner A (1997) Water balance of an Australian subtropical rainforest at altitude: the ecological and physiological significance of intercepted cloud and fog. Australian Journal of Botany 45, 311–329.
Water balance of an Australian subtropical rainforest at altitude: the ecological and physiological significance of intercepted cloud and fog.Crossref | GoogleScholarGoogle Scholar |

Kembel SW, Cowan PD, Helmus MR, Cornwell WK, Morlon H, Ackerly DD, Blomberg SP, Webb CO (2010) Picante: R tools for integrating phylogenies and ecology. Bioinformatics 26, 1463–1464.
Picante: R tools for integrating phylogenies and ecology.Crossref | GoogleScholarGoogle Scholar |

Kooyman R, Rossetto M, Cornwell W, Westoby M (2011) Phylogenetic tests of community assembly across regional to continental scales in tropical and subtropical rain forests. Global Ecology and Biogeography 20, 707–716.
Phylogenetic tests of community assembly across regional to continental scales in tropical and subtropical rain forests.Crossref | GoogleScholarGoogle Scholar |

Kooyman R, Rossetto M, Allen C, Cornwell W (2012) Australian tropical and subtropical rain forest community assembly: phylogeny, functional biogeography, and environmental gradients. Biotropica 44, 668–679.
Australian tropical and subtropical rain forest community assembly: phylogeny, functional biogeography, and environmental gradients.Crossref | GoogleScholarGoogle Scholar |

Kooyman RM, Rossetto M, Sauquet H, Laffan SW (2013) Landscape patterns in rainforest phylogenetic signal: Isolated islands of refugia or structured continental distributions. PLoS One 8, e80685
Landscape patterns in rainforest phylogenetic signal: Isolated islands of refugia or structured continental distributions.Crossref | GoogleScholarGoogle Scholar |

Kooyman RM, Wilf P, Barreda VD, Carpenter RJ, Jordan GJ, Sniderman JMK, Allen A, Brodribb TJ, Crayn D, Feild TS, Laffan SW, Lusk CH, Rossetto M, Weston PH (2014) Paleo-Antarctic rainforest into the modern Old World tropics: the rich past and threatened future of the ‘southern wet forest survivors’. American Journal of Botany 101, 2121–2135.
Paleo-Antarctic rainforest into the modern Old World tropics: the rich past and threatened future of the ‘southern wet forest survivors’.Crossref | GoogleScholarGoogle Scholar |

Kreft H, Jetz W (2007) Global patterns and determinants of vascular plant diversity. Proceedings of the National Academy of Sciences of the United States of America 104, 5925–5930.
Global patterns and determinants of vascular plant diversity.Crossref | GoogleScholarGoogle Scholar |

Laidlaw M, McDonald W, Hunter R, Kitching R (2011) Subtropical rainforest turnover along an altitudinal gradient. Memoirs of the Queensland Museum 55, 271–290.

Laidlaw MJ, Richardson KS, Yeates AG, McDonald WJ, Hunter RJ (2016) Modelling the spatial distribution of beta diversity in Australian subtropical rainforest. Austral Ecology 41, 189–196.
Modelling the spatial distribution of beta diversity in Australian subtropical rainforest.Crossref | GoogleScholarGoogle Scholar |

Letunic I, Bork P (2016) Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees. Nucleic Acids Research 44, W242–W245.
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees.Crossref | GoogleScholarGoogle Scholar |

Limm EB, Simonin KA, Bothman AG, Dawson TE (2009) Foliar water uptake: a common water acquisition strategy for plants of the redwood forest. Oecologia 161, 449–459.
Foliar water uptake: a common water acquisition strategy for plants of the redwood forest.Crossref | GoogleScholarGoogle Scholar |

Lookingbill TR, Urban DL (2003) Spatial estimation of air temperature differences for landscape-scale studies in montane environments. Agricultural and Forest Meteorology 114, 141–151.
Spatial estimation of air temperature differences for landscape-scale studies in montane environments.Crossref | GoogleScholarGoogle Scholar |

Mace GM, Balmford A, Boitani L, Cowlishaw G, Dobson AP, Faith DP, Gaston KJ, Humphries CJ, Vane-Wright RI, Williams PH, Lawton JH, Margules CR, May RM, Nicholls AO, Possingham HP, Rahbek C, van Jaarsveld AS (2000) It’s time to work together and stop duplicating conservation efforts.. Nature 405, 393
It’s time to work together and stop duplicating conservation efforts..Crossref | GoogleScholarGoogle Scholar |

Margules CR, Pressey RL (2000) Systematic conservation planning. Nature 405, 243–253.
Systematic conservation planning.Crossref | GoogleScholarGoogle Scholar |

Mayfield MM, Levine JM (2010) Opposing effects of competitive exclusion on the phylogenetic structure of communities. Ecology Letters 13, 1085–1093.
Opposing effects of competitive exclusion on the phylogenetic structure of communities.Crossref | GoogleScholarGoogle Scholar |

Mellick R, Lowe A, Rossetto M (2011) Consequences of long- and short-term fragmentation on the genetic diversity and differentiation of a late successional rainforest conifer. Australian Journal of Botany 59, 351–362.
Consequences of long- and short-term fragmentation on the genetic diversity and differentiation of a late successional rainforest conifer.Crossref | GoogleScholarGoogle Scholar |

Morgan G (2001) ‘Landscape health in Australia: a rapid assessment of the relative condition of Australia’s bioregions and subregions.’ (Environment Australia, Canberra, National Land and Water Resources Audit, Canberra)

Murphy H, Liedloff A, Williams R, Williams K, Dunlop M (2012) Queensland’s biodiversity under climate change: terrestrial ecosystems. CSIRO Climate Adaptation Flagship Working Paper #12C. Available at: https://research.csiro.au/climate/wp-content/uploads/sites/54/2016/03/12C_CAF-Working-Paper-12C.pdf [verified 15 October 2018].

Neldner VJ, Butler DW (2008) Is 500m2 an effective plot size to sample floristic diversity for Queensland’s vegetation? Cunninghamia 10, 513–519.

Neldner VJ, Wilson BA, Thompson EJ, Dillewaard HA (2012) ‘Methodology for survey and mapping of regional ecosystems and vegetation communities in Queensland. Ver. 3.2.’ (Queensland Herbarium, Queensland Department of Science, Information Technology, Innovation and the Arts: Brisbane)

Nipperess DA, Faith DP, Barton K (2010) Resemblance in phylogenetic diversity among ecological assemblages. Journal of Vegetation Science 21, 809–820.
Resemblance in phylogenetic diversity among ecological assemblages.Crossref | GoogleScholarGoogle Scholar |

Parkes T, Delaney M, Dunphy M, Woodford R, Bower H, Bower S, Bailey D, Joseph R, Nagle J, Roberts T, Lymburner S, McDonald T (2012) Big scrub: a cleared landscape in transition back to forest? Ecological Management & Restoration 13, 212–223.
Big scrub: a cleared landscape in transition back to forest?Crossref | GoogleScholarGoogle Scholar |

Peel MC, Finlayson BL, McMahon TA (2007) Updated world map of the Köppen-Geiger climate classification. Hydrology and Earth System Sciences 11, 1633–1644.
Updated world map of the Köppen-Geiger climate classification.Crossref | GoogleScholarGoogle Scholar |

Powell M, Accad A, Shapcott A (2014) Where they are, why they are there, and where they are going: using niche models to assess impacts of disturbance on the distribution of three endemic rare subtropical rainforest trees of Macadamia (Proteaceae) species. Australian Journal of Botany 62, 322–334.

Procheş Ş, Ramdhani S, Perera SJ, Ali JR, Gairola S (2015) Global hotspots in the present-day distribution of ancient animal and plant lineages. Scientific Reports 5, 15457
Global hotspots in the present-day distribution of ancient animal and plant lineages.Crossref | GoogleScholarGoogle Scholar |

Queensland Government (2016a) ‘Protected areas of Queensland – boundaries.’ (Department of National Parks, Sport and Racing: Brisbane)

Queensland Government (2016b) ‘Land for public recreation Queensland.’ (Department of National Parks, Sport and Racing: Brisbane)

Queensland Herbarium (2015) Regional ecosystem description database. Ver. 9.0.’’ (Queensland Department of Science, Information Technology and Innovation: Brisbane)

Rosauer DF, Catullo RA, VanDerWal J, Moussalli A, Moritz C (2015) Lineage range estimation method reveals fine-scale endemism linked to Pleistocene stability in Australian rainforest herpetofauna. PLoS One 10, e0126274
Lineage range estimation method reveals fine-scale endemism linked to Pleistocene stability in Australian rainforest herpetofauna.Crossref | GoogleScholarGoogle Scholar |

Rossetto M, McPherson H, Siow J, Kooyman R, van der Merwe M, Wilson PD (2015) Where did all the trees come from? A novel multispecies approach reveals the impacts of biogeographical history and functional diversity on rain forest assembly. Journal of Biogeography 42, 2172–2186.
Where did all the trees come from? A novel multispecies approach reveals the impacts of biogeographical history and functional diversity on rain forest assembly.Crossref | GoogleScholarGoogle Scholar |

Sechrest W, Brooks TM, da Fonseca GAB, Konstant WR, Mittermeier RA, Purvis A, Rylands AB, Gittleman JL (2002) Hotspots and the conservation of evolutionary history. Proceedings of the National Academy of Sciences of the United States of America 99, 2067–2071.
Hotspots and the conservation of evolutionary history.Crossref | GoogleScholarGoogle Scholar |

Sgrò CM, Lowe AJ, Hoffmann AA (2011) Building evolutionary resilience for conserving biodiversity under climate change. Evolutionary Applications 4, 326–337.
Building evolutionary resilience for conserving biodiversity under climate change.Crossref | GoogleScholarGoogle Scholar |

Shapcott A, Forster PI, Guymer GP, McDonald WJ, Faith DP, Erickson D, Kress WJ (2015) Mapping biodiversity and setting conservation priorities for SE Queensland’s rainforests using DNA barcoding. PLoS One 10, e0122164
Mapping biodiversity and setting conservation priorities for SE Queensland’s rainforests using DNA barcoding.Crossref | GoogleScholarGoogle Scholar |

Shapcott A, Liu Y, Forster PI, Kress WJ, Faith DP, Shimizu-Kimura Y, McDonald WJF (2017) Using DNA barcodes to compare the diversity and conservation of different rainforest ecosystems using the Regional ecosystem classification and mapping of SE Queensland rainforest flora as a case study. International Journal of Plant Sciences 178, 211–229.
Using DNA barcodes to compare the diversity and conservation of different rainforest ecosystems using the Regional ecosystem classification and mapping of SE Queensland rainforest flora as a case study.Crossref | GoogleScholarGoogle Scholar |

Sniderman JMK, Jordan GJ (2011) Extent and timing of floristic exchange between Australian and Asian rain forests. Journal of Biogeography 38, 1445–1455.
Extent and timing of floristic exchange between Australian and Asian rain forests.Crossref | GoogleScholarGoogle Scholar |

Styger J, Kirkpatrick JB, Unwin G (2016) Throughfall and its spatial variability in a temperate rainforest of simple structure. Physical Geography 37, 251–263.
Throughfall and its spatial variability in a temperate rainforest of simple structure.Crossref | GoogleScholarGoogle Scholar |

Swenson NG (2012) Phylogenetic analyses of ecological communities using DNA barcode data. In ‘DNA barcodes methods and protocols’. (Eds WJ Kress, DL Erickson) pp. 409–422. (Springer: New York)

Tracey JG (1969) Edaphic differentiation of some forest types in eastern Australia: I. Soil physical factors. Journal of Ecology 57, 805–816.
Edaphic differentiation of some forest types in eastern Australia: I. Soil physical factors.Crossref | GoogleScholarGoogle Scholar |

Valiente-Banuet A, Verdu M (2007) Facilitation can increase the phylogenetic diversity of plant communities. Ecology Letters 10, 1029–1036.
Facilitation can increase the phylogenetic diversity of plant communities.Crossref | GoogleScholarGoogle Scholar |

Vane-Wright RI, Humphries CJ, Williams PH (1991) What to protect? – Systematics and the agony of choice. Biological Conservation 55, 235–254.
What to protect? – Systematics and the agony of choice.Crossref | GoogleScholarGoogle Scholar |

Webb LJ (1959) A physiognomic classification of Australian rain forests. Journal of Ecology 47, 551–570.
A physiognomic classification of Australian rain forests.Crossref | GoogleScholarGoogle Scholar |

Webb LJ (1968) Environmental relationships of the structural types of Australian rain forest vegetation. Ecology 49, 296–311.
Environmental relationships of the structural types of Australian rain forest vegetation.Crossref | GoogleScholarGoogle Scholar |

Webb CO (2000) Exploring the phylogenetic structure of ecological communities: an example for rain forest trees. American Naturalist 156, 145–155.
Exploring the phylogenetic structure of ecological communities: an example for rain forest trees.Crossref | GoogleScholarGoogle Scholar |

Webb L, Tracey J (1981) Australian rainforests: patterns and change. In ‘Ecological biogeography of Australia’. pp. 605–694. (Dr. W. Junk bv Publishers: The Hague)

Webb CO, Ackerly DD, McPeek MA, Donoghue MJ (2002) Phylogenies and community ecology. Annual Review of Ecology and Systematics 33, 475–505.
Phylogenies and community ecology.Crossref | GoogleScholarGoogle Scholar |

Weber LC, VanDerWal J, Schmidt S, McDonald WJ, Shoo LP (2014) Patterns of rain forest plant endemism in subtropical Australia relate to stable mesic refugia and species dispersal limitations. Journal of Biogeography 41, 222–238.
Patterns of rain forest plant endemism in subtropical Australia relate to stable mesic refugia and species dispersal limitations.Crossref | GoogleScholarGoogle Scholar |

Williams KJ, Ford A, Rosauer DF, Silva N, Mittermeier R, Bruce C, Larsen FW, Margules C (2011) Forests of east Australia: the 35th biodiversity hotspot. In ‘Biodiversity hotspots: distribution and protection of conservation priority areas’. (Eds EF Zachos, CJ Habel) pp. 295–310. (Springer Berlin Heidelberg: Berlin)

Wilson JB, Peet RK, Dengler J, Pärtel M (2012) Plant species richness: the world records. Journal of Vegetation Science 23, 796–802.
Plant species richness: the world records.Crossref | GoogleScholarGoogle Scholar |

Young PAR, McDonald WJF (1987) The distribution, composition and status of the rain forests of southern Queensland. In ‘The rain forest legacy. Australian national rainforests study. Vol. 1’. (Eds GL Werren G, AP Kershaw) pp. 119–141. (Australian Government Publishing Service: Canberra)