Genetic diversity and population genetic structure in fragmented Allocasuarina verticillata (Allocasuarinaceae) – implications for restoration
Linda M. BroadhurstCSIRO Plant Industry, PO Box 1600, Canberra, ACT 2600, Australia. Email: Linda.Broadhurst@csiro.au
Australian Journal of Botany 59(8) 770-780 https://doi.org/10.1071/BT11253
Submitted: 5 October 2011 Accepted: 6 December 2011 Published: 23 January 2012
Abstract
Vegetation restoration in fragmented regions is constrained by limited supplies of high quality seed and an understanding of the scale over which seed can be moved without causing negative outcomes. ‘Local’ seed is often prescribed for restoration but in fragmented landscapes this restricts collecting to small, inbred populations. Six polymorphic microsatellites were used to examine genetic diversity and population genetic structure in seed collected from 18 fragmented natural populations and three restored populations of the wind-pollinated and dispersed tree Allocasuarina verticillata, a key restoration species. Smaller populations produced seed crops with significantly fewer alleles, lower allelic richness and less gene diversity. Most of the populations assessed, including the restored sites, produce genetically diverse seed crops suitable for restoration but smaller populations (<30 plants) should be augmented with seed from larger populations. Principal coordinate analysis, graph-theory and Bayesian analyses found little evidence of spatially predictable genetic structure across the study region, which probably reflects long distance gene dispersal preventing the development of strong spatial structure. The absence of strong spatial patterns suggests that seed can be moved beyond current 5–50-km limits while being mindful of strong selection gradients or conditions that might indicate locally adapted populations.
References
Agren J (1996) Population size, pollinator limitation, and seed set in the self-incompatible herb Lythrum salicaria. Ecology 77, 1779–1790.| Population size, pollinator limitation, and seed set in the self-incompatible herb Lythrum salicaria.Crossref | GoogleScholarGoogle Scholar |
Aguilar R, Ashworth L, Galetto L, Aizen MA (2006) Plant reproduction susceptibility to habitat fragmentation: review and synthesis through a meta-analysis. Ecology Letters 9, 968–980.
| Plant reproduction susceptibility to habitat fragmentation: review and synthesis through a meta-analysis.Crossref | GoogleScholarGoogle Scholar |
Aguilar R, Quesada M, Ashworth L, Herrerias-Diego Y, Lobo J (2008) Genetic consequences of habitat fragmentation in plant populations: susceptible signals in plant traits and methodological approaches. Molecular Ecology 17, 5177–5188.
| Genetic consequences of habitat fragmentation in plant populations: susceptible signals in plant traits and methodological approaches.Crossref | GoogleScholarGoogle Scholar |
Bacles CEF, Jump AS (2011) Taking a tree’s perspective on forest fragmentation genetics. Trends in Plant Science 16, 13–18.
| Taking a tree’s perspective on forest fragmentation genetics.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3MXjvFOhsQ%3D%3D&md5=9640f19fd50fb82ab6a1684bf3f84ad5CAS |
Bacles CFE, Lowe AJ, Ennos RA (2006) Seed dispersal across a fragmented landscape. Science 311, 628
| Seed dispersal across a fragmented landscape.Crossref | GoogleScholarGoogle Scholar |
Barrett LG, Brubaker CL (2006) Isolation and characterization of microsatellite loci from the rust pathogen, Melampsora lini. Molecular Ecology Notes 6, 930–932.
| Isolation and characterization of microsatellite loci from the rust pathogen, Melampsora lini.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD28XhtVGmsrjJ&md5=b42fcd7b429991f30bcb9583b61a5716CAS |
Bittencourt JVM, Sebbenn AM (2007) Patterns of pollen and seed dispersal in a small, fragmented population of the wind-pollinated tree Araucaria angustifolia in southern Brazil. Heredity 99, 580–591.
| Patterns of pollen and seed dispersal in a small, fragmented population of the wind-pollinated tree Araucaria angustifolia in southern Brazil.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DC%2BD2snptFChtg%3D%3D&md5=0766389ea7833fb533ec4fd149341220CAS |
Bizoux JP, Dainou K, Bourland N, Hardy OJ, Heuertz M, Mahy G, Doucet JL (2009) Spatial genetic structure in Milicia excelsa (Moraceae) indicates extensive gene dispersal in a low-density wind-pollinated tropical tree. Molecular Ecology 18, 4398–4408.
| Spatial genetic structure in Milicia excelsa (Moraceae) indicates extensive gene dispersal in a low-density wind-pollinated tropical tree.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXhsFaitrbK&md5=c18ac431ad3dd2e1fd7ae19083e53b02CAS |
Broadhurst LM, Young AG (2006) Reproductive constraints to the long-term persistence of fragmented Acacia dealbata (Mimosaceae) populations in southeast Australia. Biological Conservation 133, 512–526.
| Reproductive constraints to the long-term persistence of fragmented Acacia dealbata (Mimosaceae) populations in southeast Australia.Crossref | GoogleScholarGoogle Scholar |
Broadhurst LM, Young AG, Thrall PH, Murray BG (2006) Sourcing seed for Acacia acinacea, a key revegetation species in south-eastern Australia. Conservation Genetics 7, 49–63.
| Sourcing seed for Acacia acinacea, a key revegetation species in south-eastern Australia.Crossref | GoogleScholarGoogle Scholar |
Broadhurst LM, Lowe A, Coates DJ, Cunningham SA, McDonald M, Vesk PA, Yates C (2008) Seed supply for broadscale restoration: maximising evolutionary potential. Evolutionary Applications 1, 587–597.
Buza L, Young A, Thrall P (2000) Genetic erosion, inbreeding and reduced fitness in fragmented populations of the endangered tetraploid pea Swainsona recta. Biological Conservation 93, 177–186.
| Genetic erosion, inbreeding and reduced fitness in fragmented populations of the endangered tetraploid pea Swainsona recta.Crossref | GoogleScholarGoogle Scholar |
CCMA (2003) ‘Corangamite Regional Catchment Strategy 2003–2008.’ (Corangamite Catchment Management Authority: Colac, Vic.)
Craft KJ, Ashley MV (2007) Landscape genetic structure of bur oak (Quercus macrocarpa) savannas in Illinois. Forest Ecology and Management 239, 13–20.
| Landscape genetic structure of bur oak (Quercus macrocarpa) savannas in Illinois.Crossref | GoogleScholarGoogle Scholar |
Crowley GM, Garnett ST (2001) Food value and tree selection by glossy black-cockatoos (Calyptorhynchus lathami). Austral Ecology 26, 116–126.
Dyer RJ (2009) GeneticStudio: a suite of programs for spatial analysis of genetic-marker. Molecular Ecology Resources 9, 110–113.
| GeneticStudio: a suite of programs for spatial analysis of genetic-marker.Crossref | GoogleScholarGoogle Scholar |
Dyer RJ, Nason JD (2004) Population graphs: the graph theoretic shape of genetic structure. Molecular Ecology 13, 1713–1727.
| Population graphs: the graph theoretic shape of genetic structure.Crossref | GoogleScholarGoogle Scholar |
Earl DA (2011) Structure harvester version 0.6.1. Available at http://taylor0.biology.ucla.edu/struct_harvest/ (accessed 29 March 2011).
Edmands S (2007) Between a rock and a hard place: evaluating the relative risks on inbreeding and outbreeding for conservation and management. Molecular Ecology 16, 463–475.
| Between a rock and a hard place: evaluating the relative risks on inbreeding and outbreeding for conservation and management.Crossref | GoogleScholarGoogle Scholar |
Ennos RA, Worrell R, Malcolm DC (1998) The genetic management of native species in Scotland. Forestry 71, 1–23.
| The genetic management of native species in Scotland.Crossref | GoogleScholarGoogle Scholar |
Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14, 2611–2620.
| Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2MXmvF2qtrg%3D&md5=9581780a5535e80afa336fc8b092ac91CAS |
Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131, 479–491.
Garrick RC, Nason JD, Meadows CA, Dyer RJ (2009) Not just vicariance: phylogeography of a Sonoran Desert euphorb indicates a major role of range expansion along the Baja peninsula. Molecular Ecology 18, 1916–1931.
| Not just vicariance: phylogeography of a Sonoran Desert euphorb indicates a major role of range expansion along the Baja peninsula.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXmsVekt7g%3D&md5=3bee12d13d7e623f38259bc357c0969aCAS |
Gonzalo-Turpin H, Hazard L (2009) Local adaptation occurs along altitudinal gradient despite the existence of gene flow in the alpine species Festuca eskia. Journal of Ecology 97, 742–751.
| Local adaptation occurs along altitudinal gradient despite the existence of gene flow in the alpine species Festuca eskia.Crossref | GoogleScholarGoogle Scholar |
Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available at http://www2.unil.ch/popgene/softwares/fstat.html.
Hamrick JL (2004) Response of forest trees to global environmental changes. Forest Ecology and Management 197, 323–335.
| Response of forest trees to global environmental changes.Crossref | GoogleScholarGoogle Scholar |
Helenurm K (1998) Outplanting and differential source population success in Lupinus guadalupensis. Conservation Biology 12, 118–127.
| Outplanting and differential source population success in Lupinus guadalupensis.Crossref | GoogleScholarGoogle Scholar |
Hubisz M, Falush D, Stephens M, Pritchard J (2009) Inferring weak population structure with the assistance of sample group information. Molecular Ecology Resources 9, 1322–1332.
| Inferring weak population structure with the assistance of sample group information.Crossref | GoogleScholarGoogle Scholar |
Hufford KM, Mazer SJ (2003) Plant ecotypes: genetic differentiation in the age of ecological genetics. Trends in Ecology & Evolution 18, 147–155.
| Plant ecotypes: genetic differentiation in the age of ecological genetics.Crossref | GoogleScholarGoogle Scholar |
Joshi J, Schmid B, Caldeira MC, Dimitrakopoulos PG, Good J, Harris R, Hector A, Huss-Danell K, Jumpponen A, Minns A, Mulder CPH, Pereira JS, Prinz A, Scherer-Lorenzen M, Siamantziouras A-SD, Terry AC, Troumbis AY, Lawton JH (2001) Local adaptation enhances performance of common plant species. Ecology Letters 4, 536–544.
| Local adaptation enhances performance of common plant species.Crossref | GoogleScholarGoogle Scholar |
Jump AS, Penuelas J (2006) Genetic effects of chronic habitat fragmentation in a wind-pollinated tree. Proceedings of the National Academy of Sciences of the United States of America 103, 8096–8100.
| Genetic effects of chronic habitat fragmentation in a wind-pollinated tree.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD28Xlt1Cht78%3D&md5=e171e7d0cc62f08391e7549b49b5e57aCAS |
Kolb A (2005) Reduced reproductive success and offspring survival in fragmented populations of the forest herb Phyteuma spicatum. Journal of Ecology 93, 1226–1237.
| Reduced reproductive success and offspring survival in fragmented populations of the forest herb Phyteuma spicatum.Crossref | GoogleScholarGoogle Scholar |
Kramer AT, Ison JL, Ashley MV, Howe HF (2008) The paradox of forest fragmentation genetics. Conservation Biology 22, 878–885.
| The paradox of forest fragmentation genetics.Crossref | GoogleScholarGoogle Scholar |
Krauss SL, He TH (2006) Rapid genetic identification of local provenance seed collection zones for ecological restoration and bloodier conservation. Journal for Nature Conservation 14, 190–199.
| Rapid genetic identification of local provenance seed collection zones for ecological restoration and bloodier conservation.Crossref | GoogleScholarGoogle Scholar |
Krauss SL, Koch JM (2004) Rapid genetic delineation of provenance for plant community restoration. Journal of Applied Ecology 41, 1162–1173.
| Rapid genetic delineation of provenance for plant community restoration.Crossref | GoogleScholarGoogle Scholar |
Leimu R, Fischer M (2008) A meta-analysis of local adaptation in plants. PLoS ONE 3, e4010
| A meta-analysis of local adaptation in plants.Crossref | GoogleScholarGoogle Scholar |
Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Research 27, 209–220.
Marcar NE, Crawford DF (2004) ‘Trees for saline landscapes.’ (RIRDC: Canberra)
Mathiasen P, Rovere AE, Premoli AC (2007) Genetic structure and early effects of inbreeding in fragmented temperate forests of a self-incompatible tree, Embothrium coccineum. Conservation Biology 21, 232–240.
| Genetic structure and early effects of inbreeding in fragmented temperate forests of a self-incompatible tree, Embothrium coccineum.Crossref | GoogleScholarGoogle Scholar |
Mehes M, Nkongolo KK, Michael P (2009) Assessing genetic diversity and structure of fragmented populations of eastern white pine (Pinus strobus) and western white pine (P. monticola) for conservation management. Journal of Plant Ecology-Uk 2, 143–151.
| Assessing genetic diversity and structure of fragmented populations of eastern white pine (Pinus strobus) and western white pine (P. monticola) for conservation management.Crossref | GoogleScholarGoogle Scholar |
Montalvo AM, Ellstrand NC (2000) Transplantation of the subshrub Lotus scoparius: testing the home-site advantage hypothesis. Conservation Biology 14, 1034–1045.
| Transplantation of the subshrub Lotus scoparius: testing the home-site advantage hypothesis.Crossref | GoogleScholarGoogle Scholar |
Nei M (1972) Genetic distance between populations. American Naturalist 106, 283–292.
| Genetic distance between populations.Crossref | GoogleScholarGoogle Scholar |
Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89, 583–590.
O’Connell LM, Mosseler A, Rajora OP (2006) Impacts of forest fragmentation on the reproductive success of white spruce. Canadian Journal of Botany 84, 956–965.
| Impacts of forest fragmentation on the reproductive success of white spruce.Crossref | GoogleScholarGoogle Scholar |
O’Connell LM, Mosseler A, Rajora OP (2007) Extensive long-distance pollen dispersal in a fragmented landscape maintains genetic diversity in white spruce. The Journal of Heredity 98, 640–645.
| Extensive long-distance pollen dispersal in a fragmented landscape maintains genetic diversity in white spruce.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1cXht1SjtQ%3D%3D&md5=d22f25ebe7462583b0480fc5fa0a8abbCAS |
Oostermeijer JGB, de Knegt B (2004) Genetic population structure of the wind-pollinated, dioecious shrub Juniperus communis in fragmented Dutch heathlands. Plant Species Biology 19, 175–184.
| Genetic population structure of the wind-pollinated, dioecious shrub Juniperus communis in fragmented Dutch heathlands.Crossref | GoogleScholarGoogle Scholar |
Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6, 288–295.
| GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research.Crossref | GoogleScholarGoogle Scholar |
Pepper JW, Male TD, Roberts GE (2000) Foraging ecology of the South Australian glossy black-cockatoo (Calyptorhynchus lathami halmaturinus). Austral Ecology 25, 16–24.
| Foraging ecology of the South Australian glossy black-cockatoo (Calyptorhynchus lathami halmaturinus).Crossref | GoogleScholarGoogle Scholar |
Petit RJ, Latouche-Halle C, Pemonge M-H, Kremer A (2002) Chloroplast DNA variation of oaks in France and the influence of forest fragmentation on genetic diversity. Forest Ecology and Management 156, 115–129.
| Chloroplast DNA variation of oaks in France and the influence of forest fragmentation on genetic diversity.Crossref | GoogleScholarGoogle Scholar |
Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155, 945–959.
Raymond M, Rousset F (1995) GENEPOP: population genetics software for exact tests and ecumenicism. The Journal of Heredity 96, 248–249.
Reed DH, Frankham R (2003) Correlation between fitness and genetic diversity. Conservation Biology 17, 230–237.
| Correlation between fitness and genetic diversity.Crossref | GoogleScholarGoogle Scholar |
Seltmann P, Renison D, Cocucci A, Hensen I, Jung K (2007) Fragment size, pollination efficiency and reproductive success in natural populations of wind-pollinated Polylepis australis (Rosaceae) trees. Flora 202, 547–554.
| Fragment size, pollination efficiency and reproductive success in natural populations of wind-pollinated Polylepis australis (Rosaceae) trees.Crossref | GoogleScholarGoogle Scholar |
Seltmann P, Hensen I, Renison D, Wesche K, Ploch S, Duenas JR, Cocucci A, Jung K (2009) Biparental inbreeding depression, genetic relatedness and progeny vigour in a wind-pollinated treeline species in Argentina. Plant Ecology 205, 155–164.
| Biparental inbreeding depression, genetic relatedness and progeny vigour in a wind-pollinated treeline species in Argentina.Crossref | GoogleScholarGoogle Scholar |
Smith SL, Sher AA, Grant TA (2007) Genetic diversity in restoration materials and impacts of seed collection in Colorado’s restoration plant production industry. Restoration Ecology 15, 369–374.
| Genetic diversity in restoration materials and impacts of seed collection in Colorado’s restoration plant production industry.Crossref | GoogleScholarGoogle Scholar |
Steven JC, Waller DM (2007) Isolation affects reproductive success in low-density but not high-density populations of two wind-pollinated Thalictrum species. Plant Ecology 190, 131–141.
Vander Mijnsbrugge K, Bischoff A, Smith B (2010) A question of origin: where and how to collect seed for ecological restoration. Basic and Applied Ecology 11, 300–311.
| A question of origin: where and how to collect seed for ecological restoration.Crossref | GoogleScholarGoogle Scholar |
Ward M, Johnson SD (2005) Pollen limitation and demographic structure in small fragmented populations of Brunsvigia radulosa (Amaryllidaceae). Oikos 108, 253–262.
| Pollen limitation and demographic structure in small fragmented populations of Brunsvigia radulosa (Amaryllidaceae).Crossref | GoogleScholarGoogle Scholar |
Wheeler MA, Byrne MM, McComb JA (2003) Little genetic differentiation within the dominant forest tree, Eucalytpus marginata (Mrtaceae) of south-western Australia. Silvae Genetica 52, 254–259.