Validation of an Alt locus for aluminium tolerance scored with eriochrome cyanine R staining method in barley cultivar Honen (Hordeum vulgare L.)
Junping Wang A B , Harsh Raman A C , Barbara Read A , Meixue Zhou B , Neville Mendham B and Shoba Venkatanagappa AA NSW Department of Primary Industries and NSW Agricultural Genomics Centre, Wagga Wagga Agricultural Institute, PMB Wagga Wagga, NSW 2650, Australia.
B Tasmanian Institute of Agricultural Research and School of Agricultural Science, University of Tasmania, Hobart, Tas. 7001, Australia.
C Corresponding author. Email: harsh.raman@dpi.nsw.gov.au
Australian Journal of Agricultural Research 57(1) 113-118 https://doi.org/10.1071/AR05202
Submitted: 3 June 2005 Accepted: 30 August 2005 Published: 30 January 2006
Abstract
Aluminium (Al) phytotoxicity is one of the major constraints for barley (Hordeum vulgare L.) production on acid soils. Genetic variation for Al tolerance is present in barley germplasm. Previous studies have shown that Al tolerance in cv. Dayton and WB229 is controlled by a single locus on 4H. The present study was conducted to investigate the genetic control of Al tolerance in Japanese barley cv. Honen, and validate the linkage relationship between the Al tolerance locus and the molecular markers established previously. An F3 progeny representing 94 F2s from the cross of F6ant28B48-16 (Al sensitive) × Honen (Al tolerant) was evaluated for Al tolerance by staining roots with eriochrome cyanine R. A single Al tolerance locus Alt was validated on the long arm of chromosome 4H in Honen. Single sequence repeat (SSR) markers Bmag353 and HVM68 flanked the Alt locus at a distance of 1.6 ± 0.9 and 5.1 ± 1.7 cM, respectively. Our results have shown that the linkage between SSR markers and the Al tolerance locus can be used to characterise the ‘unknown source’ for Al tolerance.
Additional keywords: acidic soils, root staining, molecular mapping, microsatellite.
Acknowledgments
This is part of a PhD research project by Junping Wang. The authors thank the NSW Agricultural Genomic Centre and the Tasmanian Institute of Agricultural Research, University of Tasmania, for providing financial support for this project.
Baier AC,
Somers DJ, Gustafson JP
(1995) Aluminium tolerance in wheat: correlating hydroponic evaluation with field and soil performances. Plant Breeding 114, 291–296.
Bona LR,
Baligar WV, Matuz J
(1993) Screening wheat and other small grains for acid soil tolerance. Landscape and Urban Planning 27, 175–178.
| Crossref | GoogleScholarGoogle Scholar |
Delhaize E,
Ryan PR,
Hebb DM,
Yamamoto Y,
Sasaki T, Matsumoto H
(2004) Engineering high-level aluminum tolerance in barley with the ALMT1 gene. Proceedings of the National Academy of Sciences of the United States of America 101, 15249–15254.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Echart CL,
Barbosa-Neto JF,
Garvin DF, Cavalli-Molina S
(2002) Aluminum tolerance in barley, methods for screening and genetic analysis. Euphytica 126, 309–313.
| Crossref | GoogleScholarGoogle Scholar |
Foy CD
(1996) Tolerance of barley cultivars to acid aluminum-toxic subsoil related to mineral element concentrations in their shoots. Journal of Plant Nutrition 19, 1361–1380.
Foy CD,
Armiger WH,
Briggle LW, Reid DA
(1965) Differential aluminum tolerance of wheat and barley varieties in acid soils. Agronomy Journal 57, 413–417.
Ishikawa S,
Wagatsuma T,
Sasaki R, Ofei-Manu P
(2000) Comparison of the amount of citric and malic acids in Al media of seven plant species and two cultivars each in five plant species. Soil Science and Plant Nutrition 46, 751–758.
Kosambi DD
(1944) The estimation of map distances from recombination values. Annals of Eugenics 12, 172–175.
Liu ZW,
Biyashev RM, Saghai-Maroof MA
(1996) Development of simple sequence repeat DNA markers and their integration into a barley linkage map. Theoretical and Applied Genetics 93, 869–876.
Ma JF,
Nagao S,
Sato K,
Ito H,
Furukawa J, Tekeda K
(2004) Molecular mapping of a gene responsible for Al–activated secretion of citrate in barley. Journal of Experimental Botany 55, 1335–1341.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Ma JF,
Zheng SJ,
Li XF,
Takeda K, Matsumoto H
(1997) A rapid hydroponic screening for aluminium tolerance in barley. Plant and Soil 191, 133–137.
| Crossref | GoogleScholarGoogle Scholar |
Manly KF,
Cudmore RH, Meer JM
(2001) Map Manager QTX, cross platform software for genetic mapping. Mammalian Genome 12, 930–932.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Minella E, Sorrells ME
(1992) Aluminum tolerance in barley, genetic relationships among genotypes of diverse origin. Crop Science 32, 593–598.
Minella E, Sorrells ME
(1997) Inheritance and chromosome location of Alp a gene controlling aluminium tolerance in ‘Dayton’ barley. Plant Breeding 116, 465–469.
Moroni JS, Sato K, Scott BJ, Read BJ, Conyers M, Cowley R, Fisher R, Poile G
(2002) New and exotic barley germplasm resistant to acidic soil. ‘Proceedings of the 12th Australasian Plant Breeding Conference’. Perth. (The Australasian Plant Breeding Association Inc.: Perth, W. Aust.)
Polle E,
Konzak CF, Kittrick JA
(1978) Visual detection of aluminum tolerance levels in wheat by haematoxylin staining of seedling roots. Crop Science 18, 823–827.
Raman H,
Karakousis A,
Moroni JS,
Raman R,
Read B,
Garvin DF,
Kochian LV, Sorrells ME
(2003) Development and allele diversity of microsatellite markers linked to the aluminium tolerance gene Alp in barley. Australian Journal of Agricultural Research 54, 1315–1321.
| Crossref | GoogleScholarGoogle Scholar |
Raman H, Moroni JS, Raman R, Karakousis A, Read B, Sato K, Scott BJ
(2001) A genomic region associated with aluminium tolerance in Barley. ‘Proceedings of the 10th Australian Barley Technical Symposium’. Canberra.
http://www.regional.org.au/au/abts/2001/t3/raman.htm
Raman H,
Moroni JS,
Sato K,
Read B, Scott BJ
(2002) Identification of AFLP and microsatellite markers linked with an aluminium tolerance gene in barley (Hordeum vulgare L.). Theoretical and Applied Genetics 105, 458–464.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Raman H, Wang J, Read B, Zhou M, Venkataganappa S, Moroni JS, O’Bree B, Mendham N
(2005) Molecular mapping of resistance to aluminium toxicity in barley. ‘Proceedings of Plant and Animal Genome XIII Conference’. San Diego, USA.
http://www.intl-pag.org/13/abstracts/PAG13_P328.htm
Raman H,
Zhang K,
Cakir M,
Appels R, Garvin DF , et al.
(2005b) Molecular mapping and characterization of the ALMT1 gene in bread wheat (Triticum aestivum L.). Genome 48, 781–791.
| PubMed |
Ramsay L,
Macaulay M,
Ivanissevich S,
degli MacLean K,
Cardle L,
Fuller J,
Edwards KJ,
Tuveson S,
Morgante M,
Massari A,
Maestri E,
Marmiroli N,
Sjakste T,
Ganal M,
Powell W, Waugh R
(2000) A simple sequence repeat based linkage map of barley. Genetics 156, 1997–2005.
| PubMed |
Ray DA
(1968) Registration of Dayton barley. Crop Science 8, 776.
Reid DA
(1970) Genetic control of reaction to aluminum in winter barley. ‘Proceedings of the 2nd International Barley Genetics Symposium’. (Ed. RA Nilan )
pp. 409–413. (Washington State University Press: Pullman, WA)
Reid DA,
Jones GD,
Armiger WH,
Foy CD,
Koch EJ, Starling TM
(1969) Differential aluminum tolerance of winter barley varieties and selections in associated greenhouse and field experiments. Agronomy Journal 61, 218–222.
Sasaki T,
Yamamoto Y,
Ezaki B,
Katsuhara M,
Ahn SJ,
Ryan PR,
Delhaize E, Matsumoto H
(2004) A wheat gene encoding an aluminum-activated malate transporter. The Plant Journal
, 645–653.
Stølen O, Anderson S
(1978) Inheritance of tolerance to low soil pH in barley. Hereditas 88, 101–105.
Tang Y,
Sorrells ME,
Kochian LV, Garvin DF
(2000) Identification of RFLP markers linked to the barley aluminum tolerance gene Alp. Crop Science 40, 778–782.
Wang J, Raman H, Read B, Zhou M, Mendham N, Venkatanagappa S
(2004) Comparison of root staining and root elongation in predicting aluminium tolerance using SSR markers in barley. ‘Proceedings of the 4th International Crop Science Congress’. Brisbane.
http://www.cropscience.org.au/icsc2004/poster/3/6/4/1168_wangj.htm
Zhao ZQ,
Ma JF,
Sato K, Takeda K
(2003) Differential Al resistance and citrate secretion in barley (Hordeum vulgare L.). Planta 217, 794–800.
| Crossref | GoogleScholarGoogle Scholar | PubMed |