Impact of young ewe fertility rate on risk and genetic gain in sheep-breeding programs using genomic selection
J. E. Newton A B C E , D. J. Brown B , S. Dominik C and J. H. J. van der Werf A DA School of Environmental and Rural Science, University of New England, Armidale, NSW 2351, Australia.
B Animal Genetics and Breeding Unit, Armidale, NSW 2351, Australia.
C CSIRO Agriculture, FD McMaster Laboratories, Armidale, NSW 2350, Australia.
D Cooperative Research Centre for Sheep Industry Innovation, Armidale, NSW 2341, Australia.
E Corresponding author. Email: jo.newton@ecodev.vic.gov.au
Animal Production Science 57(8) 1653-1664 https://doi.org/10.1071/AN15321
Submitted: 23 June 2015 Accepted: 15 April 2016 Published: 13 July 2016
Abstract
Genomic selection could be useful in sheep-breeding programs, especially if rams and ewes are first mated at an earlier age than is the current industry practice. However, young-ewe (1 year old) fertility rates are known to be lower and more variable than those of mature ewes. The aim of the present study was to evaluate how young-ewe fertility rate affects risk and expected genetic gain in Australian sheep-breeding programs that use genomic information and select ewes and rams at different ages. The study used stochastic simulation to model different flock age structures and young-ewe fertility levels with and without genomic information for Merino and maternal sheep-breeding programs. The results from 10 years of selection were used to compare breeding programs on the basis of the mean and variation in genetic gain. Ram and ewe age, availability of genomic information on males and young-ewe fertility level all significantly (P < 0.05) affected expected genetic gain. Higher young-ewe fertility rates significantly increased expected genetic gain. Low fertility rate of young ewes (10%) resulted in net genetic gain similar to not selecting ewes until they were 19 months old and did not increase breeding-program risk, as the likelihood of genetic gain being lower than the range of possible solutions from a breeding program with late selection of both sexes was zero. Genomic information was of significantly (P < 0.05) more value for 1-year-old rams than for 2-year-old rams. Unless genomic information was available, early mating of rams offered no greater gain in Merino breeding programs and increased breeding-program risk. It is concluded that genomic information decreases the risk associated with selecting replacements at 7 months of age. Genetic progress is unlikely to be adversely affected if fertility levels above 10% can be achieved. Whether the joining of young ewes is a viable management decision for a breeder will depend on the fertility level that can be achieved in their young ewes and on other costs associated with the early mating of ewes.
Additional keywords: maternal, Merino, stochastic simulation.
References
Amer PR, McEwan JC, Dodds KG, Davis GH (1999) Economic values for ewe prolificacy and lamb survival in New Zealand sheep. Livestock Production Science 59, 75–90.Anderson JR (1988) Accounting for risk in livestock improvement programs. Proceedings of the Association Advancement Animal Breeding and Genetics 7, 32–41.
Baker RL, Steine TA, Gjedrem T, Våbenø AW, Bekken A (1978) Effect of mating ewe lambs on lifetime productive performance. Acta Agriculturae Scandinavica 28, 203–217.
Banks RG, van der Werf JHJ, Kinghorn BP (1998) Optimal use of young and old sires in sheep breeding. In ‘Proceedings of the 6th world congress on genetics applied to livestock production’. pp. 15–18. (University of New England: Armidale, NSW)
Brown DJ, Huisman AE, Swan AA, Graser H-U, Woolaston RR, Ball AJ, Atkins KD, Banks RB (2007) Genetic evaluation for the Australian sheep industry. Proceedings of the Association for the Advancement of Animal Breeding and Genetics 17, 187–194.
Bunter KL, Brown DJ (2013) Yearling and adult expressions of reproduction in maternal sheep breeds are genetically different traits. Proceedings of the Association for the Advancement of Animal Breeding and Genetics 20, 82–85.
Bunter KL, Newton JE (2014) ‘B.LSM.0046. More lambs per ewe lifetime through better genetic evaluation systems.’ (Meat and Livestock Australia: Sydney)
Corner RA, Mulvaney FJ, Morris ST, West DM, Morel PCH, Kenyon PR (2013) A comparison of the reproductive performance of ewe lambs and mature ewes. Small Ruminant Research 114, 126–133.
| A comparison of the reproductive performance of ewe lambs and mature ewes.Crossref | GoogleScholarGoogle Scholar |
Curtis K (2014) ‘B.LSM.0055. Stocktake of the Australian sheep flock.’ (Meat and Livestock Australia: Sydney)
Daetwyler HD, Bolormaa S, Kemper KE, Brown D, Swan AA, van der Werf JHJ, Hayes BJ (2014) Using genomics to improve reproduction traits in sheep. In ‘Proceedings of the 10th world congress of genetics applied to livestock production’. (American Society of Animal Science: Vancouver, Canada)
Davies G, Stear MJ, Benothman M, Abuagob O, Kerr A, Mitchell S, Bishop SC (2006) Quantitative trait loci associated with parasitic infection in Scottish blackface sheep. Heredity 96, 252–258.
| Quantitative trait loci associated with parasitic infection in Scottish blackface sheep.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD28Xhs1KisbY%3D&md5=b823c834082790dab4bef85df8c4c11fCAS | 16391549PubMed |
Dekkers JCM (2007) Prediction of response to marker-assisted and genomic selection using selection index theory. Journal of Animal Breeding and Genetics 124, 331–341.
| Prediction of response to marker-assisted and genomic selection using selection index theory.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DC%2BD2sjjvFyiuw%3D%3D&md5=378a6af03399aa4b706b9b267d7ddae0CAS |
Dekkers JCM (2012) Application of genomics tools to animal breeding. Current Genomics 13, 207–212.
| Application of genomics tools to animal breeding.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XnsVWjtbw%3D&md5=e629a6a50808c769450ec8bd3ba619dcCAS |
Dominik S (2012) ‘B.SGN.0133. Modelling the economic benefit of utilising genomic information to the wool and meat sheep industries.’ (Meat and Livestock Australia: Sydney)
Fogarty NM, Ingham VM, Gilmour AR, Cummins LJ, Gaunt GM, Stafford J, Edwards JEH, Banks RG (2005) Genetic evaluation of crossbred lamb production. 1. Breed and fixed effects for birth and weaning weight of first-cross lambs, gestation length, and reproduction of base ewes. Australian Journal of Agricultural Research 56, 443–453.
| Genetic evaluation of crossbred lamb production. 1. Breed and fixed effects for birth and weaning weight of first-cross lambs, gestation length, and reproduction of base ewes.Crossref | GoogleScholarGoogle Scholar |
Fogarty NM, Ingham VM, Gilmour AR, Afolayan RA, Cummins LJ, Edwards JEH, Gaunt GM (2007) Genetic evaluation of crossbred lamb production. 5. Age of puberty and lambing performance of yearling crossbred ewes. Australian Journal of Agricultural Research 58, 928–934.
| Genetic evaluation of crossbred lamb production. 5. Age of puberty and lambing performance of yearling crossbred ewes.Crossref | GoogleScholarGoogle Scholar |
Granleese T, Clark SA, van der Werf JHJ (2014) Increased genetic gains in sheep breeding programs from using female reproductive technologies combined with genomic selection. In ‘Proceedings of the 10th world congress of genetics applied to livestock production’. (American Society of Animal Science: Vancouver, Canada)
Horton BJ, Banks RG, van der Werf JHJ (2015) Industry benefits from using genomic information in two- and three-tier sheep breeding systems. Animal Production Science 55, 437–446.
| Industry benefits from using genomic information in two- and three-tier sheep breeding systems.Crossref | GoogleScholarGoogle Scholar |
Inman HF, Bradley EL (1989) The overlapping coefficient as a measure of agreement between probability distributions and point estimation of the overlap of two normal densities. Communications in Statistics. Theory and Methods 18, 3851–3874.
| The overlapping coefficient as a measure of agreement between probability distributions and point estimation of the overlap of two normal densities.Crossref | GoogleScholarGoogle Scholar |
James JW (1987) Determination of optimal selection policies. Journal of Animal Breeding and Genetics 104, 23–27.
| Determination of optimal selection policies.Crossref | GoogleScholarGoogle Scholar |
Johnston DJ, Tier B, Graser H-U (2012) Beef cattle breeding in Australia with genomics: opportunities and needs. Animal Production Science 52, 100–106.
| Beef cattle breeding in Australia with genomics: opportunities and needs.Crossref | GoogleScholarGoogle Scholar |
Klieve HM, Kinghorn BP, Barwick SA (1993) The value of accuracy in making selection decisions. Journal of Animal Breeding and Genetics 110, 1–12.
| The value of accuracy in making selection decisions.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DC%2BC3M3mtF2jug%3D%3D&md5=166d5832898ba37a5f19c22bf8945fddCAS | 21395699PubMed |
McCall DG, Hight GK (1981) Environmental influences on hogget lambing performance and the relationship between hogget and two-tooth lambing performance. New Zealand Journal of Agricultural Research 24, 145–152.
| Environmental influences on hogget lambing performance and the relationship between hogget and two-tooth lambing performance.Crossref | GoogleScholarGoogle Scholar |
Meuwissen T, Goddard M (1996) The use of marker haplotypes in animal breeding schemes. Genetics, Selection, Evolution 28, 161–176.
| The use of marker haplotypes in animal breeding schemes.Crossref | GoogleScholarGoogle Scholar |
Meuwissen T, Hayes B, Goddard M (2013) Accelerating improvement of livestock with genomic selection. Annual Review of Animal Biosciences 1, 221–237.
| Accelerating improvement of livestock with genomic selection.Crossref | GoogleScholarGoogle Scholar | 25387018PubMed |
Newton JE, Brown DJ, Dominik S, van der Werf JHJ (2014a) Genetic and phenotypic parameters between yearling, hogget and adult reproductive performance and age of first oestrus in sheep. Animal Production Science 54, 753–761.
| Genetic and phenotypic parameters between yearling, hogget and adult reproductive performance and age of first oestrus in sheep.Crossref | GoogleScholarGoogle Scholar |
Newton JE, Brown DJ, Swan AA, Dominik S, van der Werf JHJ (2014b) Effects of selection accuracy, risk and young ewe fertility on breeding program design. In ‘Proceedings of the 10th world congress on genetics applied to livestock production’. (American Society of Animal Science: Vancouver, Canada)
Pickering NK, Dodds KG, Auvray B, McEwan JC (2013) The impact of genomic selection on genetic gain in the New Zealand sheep dual purpose selection index. Proceedings of the Association Advancement Animal Breeding and Genetics 20, 175–178.
R Core Team (2013) ‘R: a language and environment for statistical computing.’ (R Foundation for Statistical Computing: Vienna)
Rogers GW (1990) A utility function for ranking sires that considers production, linear type traits, semen cost, and risk. Journal of Dairy Science 73, 532–538.
| A utility function for ranking sires that considers production, linear type traits, semen cost, and risk.Crossref | GoogleScholarGoogle Scholar |
Rosales Nieto CA, Ferguson MB, Macleay CA, Briegel JR, Wood DA, Martin GB, Thompson AN (2013) Ewe lambs with higher breeding values for growth achieve higher reproductive performance when mated at age 8 months. Theriogenology 80, 427–435.
| Ewe lambs with higher breeding values for growth achieve higher reproductive performance when mated at age 8 months.Crossref | GoogleScholarGoogle Scholar |
Safari E, Fogarty NM, Gilmour AR, Atkins KD, Mortimer SI, Swan AA, Brien FD, Greeff JC, van der Werf JHJ (2007) Across population genetic parameters for wool, growth, and reproduction traits in Australian Merino sheep. 1. Data structure and non-genetic effects. Australian Journal of Agricultural Research 58, 169–175.
| Across population genetic parameters for wool, growth, and reproduction traits in Australian Merino sheep. 1. Data structure and non-genetic effects.Crossref | GoogleScholarGoogle Scholar |
Schneeberger M, Freeman AE (1980) Application of utility functions to results of a crossbreeding experiment. Journal of Animal Science 50, 821–827.
Simm G (2000) ‘Genetic improvement of cattle and sheep.’ (Farming Press, Miller Freeman UK: Tonbridge, UK)
Swan AA, Brown DJ (2013) The impact of measuring adult fleece traits with genomic selection on economic gain in Merino selection indexes. Proceedings of the Association for the Advancement of Animal Breeding and Genetics. 20, 233–236.
Swan AA, Brown DJ, Daetwyler HD, Hayes BJ, Kelly M, Moghaddar N, van der Werf JHJ (2014) Genomic evaluations in the Australian sheep industry. In ‘Proceedings of the 10th world congress on genetics applied to livestock production’. (American Society of Animal Science: Vancouver, Canada)
van der Werf JHJ (2009) Potential benefit of genomic selection in sheep. Proceedings of the Association Advancement Animal Breeding and Genetics 18, 38–41.
van der Werf JHJ, Banks RG, Clark SA, Lee SJ, Daetwyler HD, Hayes BJ, Swan AA (2014) Genomic selection in sheep breeding programs. In ‘Proceedings of the 10th world congress on genetics applied to livestock production’. (American Society of Animal Science: Vancouver, Canada)
Walker S, Kleeman DO, Bawden CS (2002) ‘MS.009 sheep peproduction in Australia. Current status and potential for improvement through flock management and gene discovery.’ (Meat and Livestock Australia: Sydney)
Whale J (2013) The feasibility of adopting 1-year-old lambing systems in commercial Merino flocks of south eastern Australia. M.Sc. Thesis, The University of Melbourne.