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Food, fibre and pharmaceuticals from animals
RESEARCH ARTICLE

TMT-based quantitative proteomic analysis of serum from domestic sheep in early pregnancy

Yujun Ren https://orcid.org/0000-0003-1870-9141 A B # , Zhunxuan Wang A B # , Yishan Sun B , Hongbin Gong B , Su Xie B , Ruonan Gao B , Xin Chen B , Qingchun Li B , Shihao Lu B , Tao Huang https://orcid.org/0000-0003-2943-5131 A B * and Min Yang B *
+ Author Affiliations
- Author Affiliations

A State Key Laboratory for Sheep Genetic Improvement and Healthy Production, Xinjiang Academy of Agricultural and Reclamation Science, Xinjiang, China.

B College of Animal Science and Technology, Shihezi University, Shihezi, China.


Handling Editor: Gry Boe-Hansen

Animal Production Science 64, AN22445 https://doi.org/10.1071/AN22445
Submitted: 2 December 2022  Accepted: 8 April 2024  Published: 1 May 2024

© 2024 The Author(s) (or their employer(s)). Published by CSIRO Publishing

Abstract

Context

Timely pregnancy diagnosis is critical for reducing non-production days and improving the reproductive efficiency of sheep flocks.

Aims

The aim of this study was to investigate the serum proteomic profile of ewes in different gestational stages and explore the potential of differentially expressed proteins as biomarkers for early gestation.

Methods

Serum samples were collected from two groups: pregnant sheep (n = 4) and non-pregnant sheep (n = 4) on Day 14 after mating. The differentially expressed proteins were detected using tandem mass-tag (TMT) labelling with liquid chromatography tandem-mass spectrometry. The differentially expressed proteins were confirmed using enzyme-linked immunosorbent assay (ELISA). Furthermore, six selected proteins were evaluated in ewes (n = 35) on Day 14 from mating by using ELISA to assess their potential as biomarkers for early pregnancy. Receiver-operating characteristic (ROC) curves were used to analyse the diagnostic accuracy of these proteins.

Key results

Twenty proteins, of a total of 555 proteins detected, showed differential expression between pregnant and non-pregnant sheep. From the ROC-curve data, CHI3L1 (AUC = 0.992), PSMB4 (AUC = 0.976) and LGALS3BP (AUC = 0.844) had high predictive value in the diagnosis of early pregnancy.

Conclusions

In this study, CHI3L1, PSMB4 and LGALS3BP were found to be differentially expressed proteins in the serum of pregnant sheep. Therefore, these three proteins carry a high probability as candidate biomarkers for early gestational embryo attachment in ewes.

Implications

Early pregnancy diagnosis enables timely identification of non-pregnant ewes, resulting in optimised resource allocation and enhanced economic benefits for farmers by reducing production costs.

Keywords: CHI3L1, early pregnancy, embryo implantation, PSMB4, reproductive, serum, sheep, tandem mass-tag labelling.

References

Bazer FW, Johnson HM (1991) Type I conceptus interferons: maternal recognition of pregnancy signals and potential therapeutic agents. American Journal of Reproductive Immunology 26(1), 19-22.
| Crossref | Google Scholar |

Chermuła B, Brązert M, Iżycki D, Ciesiółka S, Kranc W, Celichowski P, Ożegowska K, Nawrocki MJ, Jankowski M, Jeseta M, Antosik P, Bukowska D, Skowroński MT, Brussow KP, Bruska M, Pawelczyk L, Zabel M, Nowicki M, Kempisty B (2019) New gene markers of angiogenesis and blood vessels development in porcine ovarian granulosa cells during short-term primary culture in vitro. BioMed Research International 2019, 6545210.
| Crossref | Google Scholar | PubMed |

Dagley LF, Emili A, Purcell AW (2013) Application of quantitative proteomics technologies to the biomarker discovery pipeline for multiple sclerosis. Proteomics – Clinical Applications 7(1–2), 91-108.
| Crossref | Google Scholar | PubMed |

Gabriel W, The M, Zolg DP, Bayer FP, Shouman O, Lautenbacher L, Schnatbaum K, Zerweck J, Knaute T, Delanghe B, Huhmer A, Wenschuh H, Reimer U, Médard G, Kuster B, Wilhelm M (2022) Prosit-TMT: deep learning boosts identification of TMT-labeled peptides. Analytical Chemistry 94(20), 7181-7190.
| Crossref | Google Scholar | PubMed |

Gao W, Xu J, Wang F, Zhang L, Peng R, Shu Y, Wu J, Tang Q, Zhu Y (2015) Plasma membrane proteomic analysis of human gastric cancer tissues: revealing flotillin 1 as a marker for gastric cancer. BMC Cancer 15, 367.
| Crossref | Google Scholar | PubMed |

Gerold G, Meissner F, Bruening J, Welsch K, Perin PM, Baumert TF, Vondran FW, Kaderali L, Marcotrigiano J, Khan AG, Mann M, Rice CM, Pietschmann T (2015) Quantitative proteomics identifies serum response factor binding protein 1 as a host factor for hepatitis C virus entry. Cell Reports 12(5), 864-878.
| Crossref | Google Scholar | PubMed |

Horgan RP, Clancy OH, Myers JE, Baker PN (2009) An overview of proteomic and metabolomic technologies and their application to pregnancy research. BJOG: An International Journal of Obstetrics & Gynaecology 116(2), 173-181.
| Crossref | Google Scholar |

Katus HA, Giannitsis E (2018) Biomarker in cardiology: DGK welcomes ESC Munich 2018. Clinical Research in Cardiology 107(Suppl 2), 10-15.
| Crossref | Google Scholar |

Liu R, Lu S, Deng Y, Yang S, He S, Cai J, Qiang F, Chen C, Zhang W, Zhao S, Qian L, Mao G, Wang Y (2016) PSMB4 expression associates with epithelial ovarian cancer growth and poor prognosis. Archives of Gynecology and Obstetrics 293(6), 1297-1307.
| Crossref | Google Scholar | PubMed |

Mairinger FD, Walter RFH, Theegarten D, Hager T, Vollbrecht C, Christoph DC, Worm K, Ting S, Werner R, Stamatis G, Mairinger T, Baba H, Zarogoulidis K, Huang H, Li Q, Tsakiridis K, Zarogoulidis P, Schmid KW, Wohlschlaeger J (2014) Gene Expression analysis of the 26S proteasome subunit PSMB4 reveals significant upregulation, different expression and association with proliferation in human pulmonary neuroendocrine tumours. Journal of Cancer 5(8), 646-654.
| Crossref | Google Scholar | PubMed |

Morton H (1998) Early pregnancy factor: an extracellular chaperonin 10 homologue. Immunology & Cell Biology 76(6), 483-496.
| Crossref | Google Scholar | PubMed |

Morton H, Hegh V, Clunie GJ (1974) Immunosuppression detected in pregnant mice by rosette inhibition test. Nature 249(456), 459-460.
| Crossref | Google Scholar | PubMed |

Moza Jalali B, Likszo P, Skarzynski DJ (2016) Proteomic and network analysis of pregnancy-induced changes in the porcine endometrium on Day 12 of gestation. Molecular Reproduction and Development 83(9), 827-841.
| Crossref | Google Scholar | PubMed |

Park EC, Lee S-Y, Yun SH, Choi C-W, Lee H, Song HS, Jun S, Kim G-H, Lee C-S, Kim SI (2018) Clinical proteomic analysis of scrub typhus infection. Clinical Proteomics 15, 6.
| Crossref | Google Scholar | PubMed |

Robker RL, Hennebold JD, Russell DL (2018) Coordination of ovulation and oocyte maturation: a good egg at the right time. Endocrinology 159(9), 3209-3218.
| Crossref | Google Scholar | PubMed |

Shao R, Hamel K, Petersen L, Cao QJ, Arenas RB, Bigelow C, Bentley B, Yan W (2009) YKL-40, a secreted glycoprotein, promotes tumor angiogenesis. Oncogene 28(50), 4456-4468.
| Crossref | Google Scholar | PubMed |

Sinclair J, Timms JF (2011) Quantitative profiling of serum samples using TMT protein labelling, fractionation and LC-MS/MS. Methods 54(4), 361-369.
| Crossref | Google Scholar | PubMed |

Song SH, Han M, Choi YS, Dan KS, Yang MG, Song J, Park SS, Lee JH (2014) Proteomic profiling of serum from patients with tuberculosis. Annals of Laboratory Medicine 34(5), 345-353.
| Crossref | Google Scholar | PubMed |

Spencer TE, Johnson GA, Bazer FW, Burghardt RC (2007) Fetal-maternal interactions during the establishment of pregnancy in ruminants. Reproduction in Domestic Ruminants 64, 379-396.
| Crossref | Google Scholar | PubMed |

Stepanova E, Gygi SP, Paulo JA (2018) Filter-based protein digestion (FPD): a detergent-free and scaffold-based strategy for TMT workflows. Journal of Proteome Research 17(3), 1227-1234.
| Crossref | Google Scholar | PubMed |

Van Rechem C, Black JC, Abbas T, Allen A, Rinehart CA, Yuan G-C, Dutta A, Whetstine JR (2011) The SKP1-Cul1-F-box and leucine-rich repeat protein 4 (SCF-FbxL4) ubiquitin ligase regulates lysine demethylase 4A (KDM4A)/Jumonji domain-containing 2A (JMJD2A) protein. Journal of Biological Chemistry 286(35), 30462-30470.
| Crossref | Google Scholar | PubMed |

Wei D, Zhang X (2010) Proteomic analysis of interactions between a deep-sea thermophilic bacteriophage and its host at high temperature. Journal of Virology 84(5), 2365-2373.
| Crossref | Google Scholar | PubMed |

Wei D, Li NL, Zeng Y, Liu B, Kumthip K, Wang TT, Huo D, Ingels JF, Lu L, Shang J, Li K (2016) The molecular chaperone GRP78 Contributes to toll-like receptor 3-mediated innate immune response to hepatitis C virus in hepatocytes. Journal of Biological Chemistry 291(23), 12294-12309.
| Crossref | Google Scholar | PubMed |

Zhao C, Wang F, Wang P, Ding H, Huang X, Shi Z (2015) Early second-trimester plasma protein profiling using multiplexed isobaric tandem mass tag (TMT) labeling predicts gestational diabetes mellitus. Acta Diabetologica 52(6), 1103-1112.
| Crossref | Google Scholar | PubMed |

Zhao S-L, Liu X-W, Wu S-W, Zheng Y-Y, Zhang W-Y (2020) Quantitative proteomic analysis of down syndrome biomarkers in maternal serum using isobaric tags for relative and absolute quantification (iTRAQ). Gynecological Endocrinology 36(6), 489-495.
| Crossref | Google Scholar |