Application of tri-axial accelerometer data to the interpretation of movement and behaviour of threatened black cockatoos
Lian Yeap
A D , Kristin S. Warren A , Willem Bouten C , Rebecca Vaughan-Higgins A , Bethany Jackson A , Karen Riley B , Sam Rycken B and Jill M. Shephard A
+ Author Affiliations
- Author Affiliations
A Harry Butler Institute, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia.
B Conservation Medicine Program, School of Veterinary Medicine, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia.
C Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Sciencepark 904, 1098 XH, Amsterdam, The Netherlands.
D Corresponding author. Email: L.Yeap@murdoch.edu.au
Wildlife Research 49(2) 100-110 https://doi.org/10.1071/WR20073
Submitted: 1 May 2020 Accepted: 8 June 2021 Published: 20 August 2021
Journal Compilation © CSIRO 2022 Open Access CC BY-NC
Abstract
Context: Carnaby’s (Calyptorhychus latirostris), Baudin’s (Calyptorhynchus baudinii) and forest red-tailed black cockatoos (Calyptorhynchus banksii naso) are threatened parrot species endemic to south-western Australia. Behavioural monitoring has previously involved direct observation, which has proven challenging because of their cryptic nature, the type of habitat they move through and their speed of movement. The development of a model to accurately classify behaviour from tri-axial accelerometer data will provide greater insight into black cockatoo behaviour and ecology.
Aims: To develop an automated classifier model to classify accelerometer data from released black cockatoos to determine behaviour and activity budgets for three species of black cockatoo.
Methods: In the present study, we attached tri-axial accelerometers, housed in GPS tags, to four Carnaby’s cockatoos, three forest red-tailed black cockatoos and two Baudin’s cockatoos in captive care, undergoing rehabilitation for release back to the wild. Accelerometer data from these birds was coupled with 19 video files of the birds’ behaviour when flying, feeding and resting, to develop an automated behaviour classifier. The classifier was then used to annotate accelerometer data from 15 birds released after successful rehabilitation and to calculate activity budgets for these birds post-release.
Key results: We developed a classifier able to identify resting, flying and foraging behaviours from accelerometer data with 86% accuracy, as determined by the percentage of observed behaviours correctly identified by the classifier. The application of the classifier to accelerometer data from 15 released cockatoos enabled us to determine behaviours and activity budgets for all three species of black cockatoo. Black cockatoos spent most of their time at rest, followed by foraging with a short period of time flying.
Conclusions: Application of the classifier to data from released birds gives researchers the ability to remotely identify patterns of behaviour and calculate activity budgets.
Implications: Combining behaviour and activity budgets with location data provides useful insight into cockatoo movement, distribution, and habitat use. Such information is important for informing conservation efforts and addressing outstanding research objectives. Further studies including larger sample sizes of Baudin’s and forest red-tailed black cockatoos and comparing behaviour and activity between birds in breeding and non-breeding areas are warranted.
Keywords: black cockatoo, Calyptorhynchus spp., machine learning, behaviour, accelerometer, GPS.
References
Altmann, S. A., and Altmann, J. (2003). The transformation of behaviour field studies. Animal Behaviour 65, 413–423.| The transformation of behaviour field studies.Crossref | GoogleScholarGoogle Scholar |
Arai, N., Kuroki, M., Sakamoto, W., and Naito, Y. (2000). Analysis of diving behavior of Adélie penguins using acceleration data logger. Polar Bioscience 13, 95–100.
Argos CLS System (2018). Available at https://argos-system.clsamerica.com/argos-cwi2/login.html [verified 8 May 2018].
Bäckman, J. (2017). Actogram analysis of free-flying migratory birds: new perspectives based on acceleration logging. Journal of Comparative Physiology. A, Neuroethology, Sensory, Neural, and Behavioral Physiology 203, 543–564.
| Actogram analysis of free-flying migratory birds: new perspectives based on acceleration logging.Crossref | GoogleScholarGoogle Scholar | 28343237PubMed |
Bouten, W., Baaij, E., Shamoun-Baranes, J., and Camphuysen, K. J. (2013). A flexible GPS tracking system for studying bird behaviour at multiple scales. Journal of Ornithology 154, 571–580.
| A flexible GPS tracking system for studying bird behaviour at multiple scales.Crossref | GoogleScholarGoogle Scholar |
Brown, D. D., Kays, R., Wikelski, M., Wilson, R., and Klimley, A. P. (2013). Observing the unwatchable through acceleration logging of animal behavior. Animal Biotelemetry 1, 20.
| Observing the unwatchable through acceleration logging of animal behavior.Crossref | GoogleScholarGoogle Scholar |
Cameron, M. (2007). ‘Cockatoos.’ (CSIRO Publishing: Melbourne, Vic., Australia.)
Camphuysen, K., Shamoun-Baranes, J., Bouten, W., and Garthe, S. (2012). Identifying ecologically important marine areas for seabirds using behavioural information in combination with distribution patterns. Biological Conservation 156, 22–29.
| Identifying ecologically important marine areas for seabirds using behavioural information in combination with distribution patterns.Crossref | GoogleScholarGoogle Scholar |
Chapman, T. F. (2007). An endangered species that is also a pest: a case study of Baudin’s Cockatoo Calyptorhynchus baudinii and the pome fruit industry in south-west Western Australia. Journal of the Royal Society of Western Australia 90, 33–40.
Cochran, W. W. (1980). Wildlife telemetry. In ‘Wildlife management techniques manual’. (Ed. S. D. Schemnitz) pp. 507–520. (The Wildlife Society: Washington, DC, USA.)
Cooke, S. J., Hinch, S. G., Wikelski, M., Andrews, R. D., Kuchel, L. J., Wolcott, T. G., and Butler, P. J. (2004). Biotelemetry: a mechanistic approach to ecology. Trends in Ecology & Evolution 19, 334–343.
| Biotelemetry: a mechanistic approach to ecology.Crossref | GoogleScholarGoogle Scholar |
Cooper, C. E., Withers, P. C., Mawson, P., Johnstone, R., Kirkby, T., Prince, J., Bradshaw, S., and Robertson, H. (2003). Characteristics of Marri (Corymbia calophylla) fruits in relation to the foraging behaviour of the Forest Red-tailed Black Cockatoo (Calyptorhynchus banksii naso). Journal of the Royal Society of Western Australia 86, 139–142.
de Bakker, M. (2011). Automatic Classification of Bird Behaviour on the basis of Accelerometer Data. B.Sc. – Artificial Intelligence Thesis. (University of Amsterdam.)
Department of Environment and Conservation (2008). ‘Forest Black Cockatoo (Baudin’s Cockatoo Calyptorrhynchus baudinii and Forest Red-tailed Black Cockatoo Calyptoryhnchus banksii naso) Recovery Plan 2007–2016.’ (Western Australian Government: Perth, WA, Australia.)
Department of Environment and Conservation (2012). ‘Carnaby’s Cockatoo (Calyptorhynchus latirostris) Recovery Plan.’ (Western Australian Government: Perth, WA, Australia.)
EPA (2019). Carnaby’s cockatoo in environmental impact assessment in the Perth and Peel Region. Advice of the Environmental Protection Authority under Section 16(j) of the Environmental Protection Act 1986. EPA Technical report. Government of Western Australia, Perth, WA, Australia. Available at https://www.epa.wa.gov.au/policies-guidance/carnaby%e2%80%99s-cockatoo-environmental-impact-assessment-perth-and-peel-region.
Groom, C. (2015). Roost site fidelity and resource use by Carnaby’s cockatoo, Calyptorhynchus latirostris, on the Swan coastal plain, Western Australia. Ph.D. Thesis, University of Western Australia, Perth, WA, Australia.
Groom, C., Warren, K., Le Souef, A., and Dawson, R. (2014). Attachment and performance of Argos satellite tracking devices fitted to black cockatoos (Calyptorhynchus spp.). Wildlife Research 41, 571–583.
| Attachment and performance of Argos satellite tracking devices fitted to black cockatoos (Calyptorhynchus spp.).Crossref | GoogleScholarGoogle Scholar |
Groom, C., White, N. E., Mitchell, N., Roberts, J. D., and Mawson, P. (2017). Assessing the spatial ecology and resource use of a mobile and endangered species in an urbanized landscape using satellite telemetry and DNA faecal metabarcoding. The Ibis 159, 390–405.
| Assessing the spatial ecology and resource use of a mobile and endangered species in an urbanized landscape using satellite telemetry and DNA faecal metabarcoding.Crossref | GoogleScholarGoogle Scholar |
IUCN (2020). The IUCN Red List of Threatened Species. Version 2020-2. Available at https://www.iucnredlist.org/.
Johnstone, R. E., and Kirkby, T. (1999). Food of the Forest Red-tailed Black Cockatoo Calyptorhynchus banksii naso in south-west Western Australia. Western Australian Naturalist (Perth) 22, 167–177.
Johnstone, R. E., and Kirkby, T. (2008). Distribution, status, social organisation, movements and conservation of Baudin’s Cockatoo (Calyptorhynchus baudinii) in South-west Western Australia. Records of the Western Australian Museum 25, 107–118.
| Distribution, status, social organisation, movements and conservation of Baudin’s Cockatoo (Calyptorhynchus baudinii) in South-west Western Australia.Crossref | GoogleScholarGoogle Scholar |
Johnstone, R. E., and Kirkby, T. (2017). Black Cockatoo Research Project – Progress Report for Housing Authority 2017. Western Australian Museum, Perth, WA, Australia.
Johnstone, R. E., Johnstone, C., and Kirkby, T. (2011). Carnaby’s Cockatoo (Calyptorhynchus latirostris), Baudin’s Cockatoo (Calyptorhynchus baudinii) and the Forest Red-tailed Black Cockatoo (Calyptorhynchus banksii naso) on the Swan Coastal Plain (Lancelin–Dunsborough), Western Australia. Studies on distribution, status, breeding, food, movements and historical changes. Report for Department of Planning, Western Australia.
Johnstone, R. E., Kirkby, T., and Sarti, K. (2013). The breeding biology of the Forest Red-tailed Black Cockatoo Calyptorhynchus banksii naso Gould in south-western Australia. II. Breeding behaviour and diet. Pacific Conservation Biology 19, 143–155.
| The breeding biology of the Forest Red-tailed Black Cockatoo Calyptorhynchus banksii naso Gould in south-western Australia. II. Breeding behaviour and diet.Crossref | GoogleScholarGoogle Scholar |
Johnstone, R. E., Kirkby, T., and Sarti, K. (2017). The distribution, status movements and diet of the forest red-tailed black cockatoo in the south-west with emphasis on the Great Perth region, Western Australia. Western Australian Naturalist (Perth) 30, 193–219.
Kenward, R. (2001). ‘A manual for wildlife radio tagging.’ 2nd edn. (Academic Press: New York, NY, USA.)
Ladds, M. A., Thompson, A. P., Kadar, J.-P., Slip, D. J., Hocking, D. P., and Harcourt, R. G. (2017). Super machine learning: improving accuracy and reducing variance of behaviour classification from accelerometry. Animal Biotelemetry 5, 8.
| Super machine learning: improving accuracy and reducing variance of behaviour classification from accelerometry.Crossref | GoogleScholarGoogle Scholar |
Le Roux, C. (2017). Nocturnal roost tree, roost site and landscape characteristics of Carnaby’s Black-Cockatoo (Calyptorynchus latirostris) on the Swan Coastal Plain. M.Sc. Thesis, Edith Cowan University, Perth, WA, Australia.
Le Souef, A. T., Stojanovic, D., Burbidge, A. H., Vitali, S. D., Heinsohn, R., Dawson, R., and Warren, K. S. (2013). Retention of transmitter attachments on black cockatoos (Calyptorhynchus spp). Pacific Conservation Biology 19, 55–57.
| Retention of transmitter attachments on black cockatoos (Calyptorhynchus spp).Crossref | GoogleScholarGoogle Scholar |
Lendvai, Á. Z., Akçay, Ç., Ouyang, J. Q., Dakin, R., Domalik, A. D., St John, P. S., Stanback, M., Moore, I. T., and Bonier, F. (2015). Analysis of the optimal duration of behavioral observations based on an automated continuous monitoring system in tree swallows (Tachycineta bicolor): is one hour good enough? PLoS One 10, e0141194.
| Analysis of the optimal duration of behavioral observations based on an automated continuous monitoring system in tree swallows (Tachycineta bicolor): is one hour good enough?Crossref | GoogleScholarGoogle Scholar | 26559407PubMed |
Meijer, C., Verhoeven, S., Ranguelova, E., Camphuysen, C. J., Shamoun-Baranes, J., and Bouten, W. (2016). ‘Visually supported annotation of bird tracking data and subsequent classification of behaviour using machine learning. 2016, Helsinki, Finland.’ (Commission on Visual Analytics of the International Cartographic Association.)
Mittermeier, R., Gil, P., Hoffmann, M., Pilgrim, J., Brooks, T., Mittermeier, C., Lamoreux, J., and Fonseca, G. (2004). ‘Hotspots Revisited. Earth’s Biologically Richest and Most Endangered Terrestrial Ecoregions.’ (CEMEX: Monterrey, Mexico.)
Nathan, R., Spiegel, O., Fortmann-Roe, S., Harel, R., Wikelski, M., and Getz, W. M. (2012). Using tri-axial acceleration data to identify behavioral modes of free-ranging animals: general concepts and tools illustrated for griffon vultures. Journal of Experimental Biology 215, .
| Using tri-axial acceleration data to identify behavioral modes of free-ranging animals: general concepts and tools illustrated for griffon vultures.Crossref | GoogleScholarGoogle Scholar |
Pepper, J. W. (1996). ‘The Behavioral Ecology of the Glossy Black-Cockatoo Calyptorhynchus lathami halmaturinus.’ Order No. 9712059. (University of Michigan: Ann Arbor, MI, USA.)
Rycken, S., Warren, K., Yeap, L., Jackson, B., Riley, K., Page, M., Dawson, R., Smith, K., Mawson, P., and Shephard, J. M. (2019). Assessing integration of GPS-tagged black cockatoos using behavioural change point analysis. The Journal of Wildlife Management , .
| Assessing integration of GPS-tagged black cockatoos using behavioural change point analysis.Crossref | GoogleScholarGoogle Scholar |
Saunders, D. A. (1977). The effect of agricultural clearing on the breeding success of the White-tailed Black Cockatoo. Emu – Austral Ornithology 77, 180–184.
| The effect of agricultural clearing on the breeding success of the White-tailed Black Cockatoo.Crossref | GoogleScholarGoogle Scholar |
Saunders, D. (1980). Food and movements of the short-billed form of the White-tailed Black Cockatoo. Wildlife Research 7, 257–269.
| Food and movements of the short-billed form of the White-tailed Black Cockatoo.Crossref | GoogleScholarGoogle Scholar |
Saunders, D. A. (1982). The breeding behaviour and biology of the short-billed form of the White-tailed Black Cockatoo Calyptorhynchus funereus. The Ibis 124, 422–455.
| The breeding behaviour and biology of the short-billed form of the White-tailed Black Cockatoo Calyptorhynchus funereus.Crossref | GoogleScholarGoogle Scholar |
Saunders, D. A. (1990). Problems of survival in an extensively cultivated landscape: the case of Carnaby’s Cockatoo Calyptorhynchus funereus latirostris. Biological Conservation 54, 277–290.
| Problems of survival in an extensively cultivated landscape: the case of Carnaby’s Cockatoo Calyptorhynchus funereus latirostris.Crossref | GoogleScholarGoogle Scholar |
Saunders, D. A., and Dawson, R. (2018). Cumulative learnings and conservation implications of a long-term study of the endangered Carnaby’s Cockatoo Calyptorhynchus latirostris. Australian Zoologist 39, 591–609.
| Cumulative learnings and conservation implications of a long-term study of the endangered Carnaby’s Cockatoo Calyptorhynchus latirostris.Crossref | GoogleScholarGoogle Scholar |
Saunders, D. A., and Ingram, J. A. (1998). Twenty-eight years of monitoring a breeding population of Carnaby’s Cockatoo. Pacific Conservation Biology 4, 261–270.
| Twenty-eight years of monitoring a breeding population of Carnaby’s Cockatoo.Crossref | GoogleScholarGoogle Scholar |
Saunders, D., Rowley, I., and Smith, G. (1985). The effects of clearing for agriculture on the distribution of cockatoos in the south west of Western Australia. In ‘Birds of Eucalypt Forests and Woodlands: Ecology, Conservation, Management’. (Eds A. Keast, H. F. Recher, H. Ford, and D. Saunders.) pp. 309–321. (Royal Australasian Ornithologists Union & Surrey Beatty: Sydney, NSW, Australia.)
Saunders, D. A., Mawson, P., and Dawson, R. (2011). The impact of two extreme weather events and other causes of death on Carnaby’s black cockatoo: a promise of things to come for a threatened species? Pacific Conservation Biology 17, 141–148.
| The impact of two extreme weather events and other causes of death on Carnaby’s black cockatoo: a promise of things to come for a threatened species?Crossref | GoogleScholarGoogle Scholar |
Shaffer, S. A. (2014). As the egg turns: monitoring egg attendance behavior in wild birds using novel data logging technology. PLoS One 9, e97898.
| As the egg turns: monitoring egg attendance behavior in wild birds using novel data logging technology.Crossref | GoogleScholarGoogle Scholar | 24887441PubMed |
Shamoun-Baranes, J., Bom, R., van Loon, E. E., Ens, B. J., Oosterbeek, K., and Bouten, W. (2012). From sensor data to animal behaviour: an oystercatcher example. PLoS One 7, e37997.
| From sensor data to animal behaviour: an oystercatcher example.Crossref | GoogleScholarGoogle Scholar | 22693586PubMed |
Shamoun-Baranes, J., Bouten, W., van Loon, E. E., Meijer, C., and Camphuysen, C. J. (2016). Flap or soar? How a flight generalist responds to its aerial environment. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 371, 20150395.
| Flap or soar? How a flight generalist responds to its aerial environment.Crossref | GoogleScholarGoogle Scholar | 27528785PubMed |
Shepard, E. L. C., Wilson, R. P., Quintana, F., Gómez Laich, A., Liebsch, N., Albareda, D. A., Halsey, L. G., Gleiss, A., Morgan, D. T., Myers, A. E., Newman, C., and Macdonald, D. W. (2008). Identification of animal movement patterns using tri-axial accelerometry. Endangered Species Research 10, 47–60.
| Identification of animal movement patterns using tri-axial accelerometry.Crossref | GoogleScholarGoogle Scholar |
Shephard, J. M., and Warren, K. (2019). Conservation management of forest red-tailed black cockatoos associated with the Maddington-Kenwick Strategic Employment Area Precinct 3 (MKSEA P3) industrial development. Report for MKSEA Pty Ltd, Western Australia. Available at blackcockatooconservationwa.com.
Stock, W. D., Finn, H., Parker, J., and Dods, K. (2013). Pine as fast food: foraging ecology of an endangered cockatoo in a forestry landscape. PLoS One 8, e61145.
| Pine as fast food: foraging ecology of an endangered cockatoo in a forestry landscape.Crossref | GoogleScholarGoogle Scholar | 23593413PubMed |
Sur, M., Suffredini, T., Wessells, S. M., Bloom, P. H., Lanzone, M., Blackshire, S., Sridhar, S., and Katzner, T. (2017). Improved supervised classification of accelerometry data to distinguish behaviors of soaring birds. PLoS One 12, e0174785.
| Improved supervised classification of accelerometry data to distinguish behaviors of soaring birds.Crossref | GoogleScholarGoogle Scholar | 28403159PubMed |
Tatler, J., Cassey, P., and Prowse, T. A. A. (2018). High accuracy at low frequency: detailed behavioural classification from accelerometer data. The Journal of Experimental Biology 221, jeb184085.
| High accuracy at low frequency: detailed behavioural classification from accelerometer data.Crossref | GoogleScholarGoogle Scholar | 30322979PubMed |
Tucker, M. A., Alexandrou, O., Bierregaard Jr, R. O., Bildstein, K. L., Böhning-Gaese, K., Bracis, C., Brzorad, J. N., Buechley, E. R., Cabot, D., Calabrese, J. M., Carrapato, C., Chiaradia, A., Davenport, L. C., Davidson, S. C., Desholm, M., DeSorbo, C. R., Domenech, R., Enggist, P., Fagan, W. F., Farwig, N., Fiedler, W., Fleming, C. H., Franke, A., Fryxell, J. M., García-Ripollés, C., Grémillet, D., Griffin, L. R., Harel, R., Kane, A., Kays, R., Kleyheeg, E., Lacy, A. E., LaPoint, S., Limiñana, R., López-López, P., Maccarone, A. D., Mellone, U., Mojica, E. K., Nathan, R., Newman, S. H., Noonan, M. J., Oppel, S., Prostor, M., Rees, E. C., Ropert-Coudert, Y., Rösner, S., Sapir, N., Schabo, D., Schmidt, M., Schulz, H., Shariati, M., Shreading, A., Paulo Silva, J., Skov, H., Spiegel, O., Takekawa, J. Y., Teitelbaum, C. S., van Toor, M. L., Urios, V., Vidal-Mateo, J., Wang, Q., Watts, B. D., Wikelski, M., Wolter, K., Žydelis, R., and Mueller, T. (2019). Large birds travel farther in homogeneous environments. Global Ecology and Biogeography 28, 576–587.
| Large birds travel farther in homogeneous environments.Crossref | GoogleScholarGoogle Scholar |
Vansteelant, W., Lameris, T., and Bouten, W. (2016). Classification tool manual. Available at http://nlesc.github.io/eEcology-Classification/.
Westcott, D., and Cockburn, A. (1988). Flock Size and Vigilance in Parrots. Australian Journal of Zoology 36, 335–349.
| Flock Size and Vigilance in Parrots.Crossref | GoogleScholarGoogle Scholar |
Williams, M. R., Yates, C. J., Saunders, D. A., Dawson, R., and Barrett, G. W. (2017). Combined demographic and resource models quantify the effects of potential land-use change on the endangered Carnaby’s cockatoo (Calyptorhynchus latirostris). Biological Conservation 210, 8–15.
| Combined demographic and resource models quantify the effects of potential land-use change on the endangered Carnaby’s cockatoo (Calyptorhynchus latirostris).Crossref | GoogleScholarGoogle Scholar |
Yeap, L., Shephard, J. M., Bouten, W., Jackson, B., Vaughan-Higgins, R., and Warren, K. (2017). Development of a tag-attachment method to enable capture of fine- and landscape-scale movement in black-cockatoos. Australian Field Ornithology 34, 49–55.
| Development of a tag-attachment method to enable capture of fine- and landscape-scale movement in black-cockatoos.Crossref | GoogleScholarGoogle Scholar |
