Free Standard AU & NZ Shipping For All Book Orders Over $80!
Register      Login
Wildlife Research Wildlife Research Society
Ecology, management and conservation in natural and modified habitats
RESEARCH ARTICLE

Modelling the susceptibility of pine stands to bark stripping by Chacma baboons (Papio ursinus) in the Mpumalanga Province of South Africa

Ilaria Germishuizen A C , Kabir Peerbhay A and Riyad Ismail B
+ Author Affiliations
- Author Affiliations

A Institute for Commercial Forestry Research, PO Box 100281, Scottsville 3209, Pietermaritzburg, South Africa.

B University of KwaZulu-Natal, School of Environmental Sciences, Private Bag X01, Scottsville 3209, Pietermaritzburg, South Africa.

C Corresponding author. Email: ilaria.germishuizen@icfr.ukzn.ac.za

Wildlife Research 44(4) 298-308 https://doi.org/10.1071/WR16170
Submitted: 7 September 2016  Accepted: 29 April 2017   Published: 29 May 2017

Abstract

Context: Commercial pine (Pinus spp.) plantations in southern Africa have been subjected to bark stripping by Chacma baboons (Papio ursinus) for many decades, resulting in severe financial losses to producers. The drivers of this behaviour are not fully understood and have been partially attributed to resource distribution and availability.

Aims: The study sought to develop a spatially explicit ecological-risk model for bark stripping by baboons to understand the environmental factors associated with the presence of damage in the pine plantations of the Mpumalanga province of South Africa.

Methods: The model was developed in Random Forests, a machine learning algorithm. Baboon damage information was collected through systematic surveys of forest plantations conducted annually. Environmental predictors included aspects of climate, topography and compartment-specific attributes. The model was applied to the pine plantations of the study area for risk evaluation.

Key results: The Random Forests classifier was successful in predicting damage occurrence (F1 score = 0.84, area under curve (AUC) = 0.96). Variable predictors that contributed most to the model classification accuracy were related to pine-stand characteristics, with the age of trees being the most important predictor, followed by species, site index and altitude. Variables pertaining to the environment surrounding a pine stand did not contribute substantially to the model performance.

Key conclusions: (1) The study suggests that bark stripping is influenced by compartment attributes; (2) predicted risk of bark stripping is higher in stands above the age of 5 years planted on high-productivity forestry sites, where site index (SI) is above 25; (3) presence of damage is not related to the proximity to natural areas; (4) further studies are required to investigate ecological and behavioural patterns associated with bark stripping.

Implications: The model provides a tool for understanding the potential extent of the risk of bark stripping by baboons within this region and it can be applied to other forestry areas in South Africa for risk evaluation. It contributes towards the assessment of natural hazards potentially affecting pine plantations and supports the development of risk-management strategies by forest managers. The model highlights opportunities for cultural interventions that may be tested for damage control.

Additional keywords: forest pests, GIS, primates, Random Forests, risk modelling.


References

Adam, E., Mutanga, O., and Ismail, R. (2013). Determining the susceptibility of Eucalyptus nitens forests to Coryphodema tristis (cossid moth) occurrence in Mpumalanga, South Africa. International Journal of Geographical Information Science 27, 1924–1938.
Determining the susceptibility of Eucalyptus nitens forests to Coryphodema tristis (cossid moth) occurrence in Mpumalanga, South Africa.Crossref | GoogleScholarGoogle Scholar |

Allouche, O., Tsoar, A., and Kadmon, R. (2006). Assessing the accuracy of species distribution models: prevalence, kappa and the true skill statistic (TSS). Journal of Applied Ecology 43, 1223–1232.
Assessing the accuracy of species distribution models: prevalence, kappa and the true skill statistic (TSS).Crossref | GoogleScholarGoogle Scholar |

Austin, M. (2007). Species distribution models and ecological theory: a critical assessment and some possible new approaches. Ecological Modelling 200, 1–19.
Species distribution models and ecological theory: a critical assessment and some possible new approaches.Crossref | GoogleScholarGoogle Scholar |

Bassa, Z., Bob, U., Szantoi, Z., and Ismail, R. (2016). Land cover and land use mapping of the iSimangaliso Wetland Park, South Africa: comparison of oblique and orthogonal random forest algorithms. Journal of Applied Remote Sensing 10, 015017.
Land cover and land use mapping of the iSimangaliso Wetland Park, South Africa: comparison of oblique and orthogonal random forest algorithms.Crossref | GoogleScholarGoogle Scholar |

Beeson, M. (1987). The origins of bark-stripping by blue monkeys (Cercopithecus mitis): implications for management. Zoological Journal of the Linnean Society 91, 265–291.
The origins of bark-stripping by blue monkeys (Cercopithecus mitis): implications for management.Crossref | GoogleScholarGoogle Scholar |

Bettinger, P., Boston, K., Siry, J. P., and Grebner, D. L. (2016). ‘Forest Management and Planning.’ (Academic Press: New York.)

Bigalke, R. C. (1980). Vertebrate damage to plantation forests in Southern Africa. In ‘IUFRO Division 1 Joint Symposium on Plantation Forests as Wildlife Habitat and Problems of Damage, Athens, Greece’. pp. 5–12. (International Union of Forest Research: Vienna.)

Bigalke, R. C., and van Hensbergen, H. J. (1990). Baboon damage in plantation forestry in South Africa. South African Forestry Journal 152, 26–33.
Baboon damage in plantation forestry in South Africa.Crossref | GoogleScholarGoogle Scholar |

Bradter, U., Kunin, W. E., Altringham, J. D., Thom, T. J., and Benton, T. G. (2013). Identifying appropriate spatial scales of predictors in species distribution models with the random forest algorithm. Methods in Ecology and Evolution 4, 167–174.
Identifying appropriate spatial scales of predictors in species distribution models with the random forest algorithm.Crossref | GoogleScholarGoogle Scholar |

Breiman, L. (2001). Random forests. Machine Learning 45, 15–32.

Ciani, A. C., Martinoli, L., Capiluppi, C., Arahou, M., and Mouna, M. (2001). Effects of water availability and habitat quality on bark-stripping behavior in Barbary macaques. Conservation Biology 15, 259–265.
Effects of water availability and habitat quality on bark-stripping behavior in Barbary macaques.Crossref | GoogleScholarGoogle Scholar |

Cohen, J. (1960). A coefficient of agreement for nominal scales. Educational and Psychological Measurement 20, 37–46.
A coefficient of agreement for nominal scales.Crossref | GoogleScholarGoogle Scholar |

Cutler, D. R., Edwards, T. C., Beard, K. H., Cutler, A., Hess, K. T., Gibson, J., and Lawler, J. J. (2007). Random forests for classification in ecology. Ecology 88, 2783–2792.
Random forests for classification in ecology.Crossref | GoogleScholarGoogle Scholar |

DAFF (2014). Report on commercial timber resources and primary roundwood processing in South Africa. Deptartment of Agriculture, Forestry and Fisheries, Pretoria, South Africa.

DEA (2015). ‘National Land Cover 2013/2014.’ (Department of Environmental Affairs: Pretoria, South Africa.)

du Toit, B. (2012). Matching site, species and silvivulture regime to optimize the productivity of commercial softwood species in southern Africa. In ‘South African Forestry Handbook’. 5th edn. (Eds B. V. Bredenkamp and S. J. Upfold.) pp. 43–50. (The Southern African Institute of Forestry: Pretoria, South Africa.)

du Toit, B., and Norris, C. H. (2012). Elements of silvicultural systems and regimes used in southern African plantations. In ‘South African Forestry Handbook’. 5th edn. (Eds B. V. Bredenkamp and S. J. Upfold.) pp. 21–26. (The Southern African Institute of Forestry: Pretoria, South Africa.)

Dunning, J. B., Danielson, B. J., and Pulliam, H. R. (1992). Ecological processes that affect population in complex landscapes. Oikos 65, 169–175.
Ecological processes that affect population in complex landscapes.Crossref | GoogleScholarGoogle Scholar |

ESRI (2014). ‘ArcGIS Desktop: Release 10.3.’ (Environmental Systems Research Institute: Redlands, CA.)

Farr, T. G., and Kobrick, M. (2000). Shuttle Radar Topography Mission produces a wealth of data. EOS Transactions – American Geophysical Union 81, 583–585.
Shuttle Radar Topography Mission produces a wealth of data.Crossref | GoogleScholarGoogle Scholar |

Fielding, A. H., and Bell, J. F. (1997). A review of methods for the assessment of prediction errors in conservation presence/absence models. Environmental Conservation 24, 38–49.
A review of methods for the assessment of prediction errors in conservation presence/absence models.Crossref | GoogleScholarGoogle Scholar |

Garzón, M. B., Blazek, R., Neteler, M., Sánches de Dios, R., Sainz Ollero, H., and Furlanello, C. (2006). Predicting habitat suitability with machine learning models: the potential area of Pinus sylvestris L. in the Iberian Peninsula. Ecological Modelling 197, 383–393.
Predicting habitat suitability with machine learning models: the potential area of Pinus sylvestris L. in the Iberian Peninsula.Crossref | GoogleScholarGoogle Scholar |

Genuer, R., Pojji, J. M., and Tuleau-Malot, C. (2010). Variable selection using Random Forests. Pattern Recognition Letters 31, 2225–2236.
Variable selection using Random Forests.Crossref | GoogleScholarGoogle Scholar |

Germishuizen, S. (2012). Grassland conservation and management in plantation forestry. In ‘South African Forestry Handbook’. 5th edn. (Eds B. V. Bredenkamp and S. J. Upfold.) pp. 599–608. (The Southern African Institute of Forestry: Pretoria, South Africa.)

Gwenzi, D., Katsvanga, C. A. T., Ngorima, G. T., Mupangwa, J. F., and Valintine, S. (2007). Baboon Papio ursinus ranging patterns and troop size relative to bark stripping in the Chimanimani Pine Plantations of Zimbabwe. Dong Wu Xue Bao 53, 777–782.

Hastie, T., Tibshirani, R., and Friedman, J. (2008). ‘The Elements of Statistical Learning: Data Mining, Inference and Prediction.’ 2nd edn. Springer series in statistics. (Springer Science + Business Media: New York.)

Henzi, S. P., Brown, L. R., Barrett, L., and Marais, A. J. (2011). Troop size, habitat use, and diet of Chacma baboons (Papio hamadryas ursinus) in commercial pine plantations: implications for management. International Journal of Primatology 32, 1020–1032.
Troop size, habitat use, and diet of Chacma baboons (Papio hamadryas ursinus) in commercial pine plantations: implications for management.Crossref | GoogleScholarGoogle Scholar |

Hijmans, R. J., Cameron, S. E., Parra, J. L., Jones, P. G., and Jarvis, A. (2005). Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology 25, 1965–1978.
Very high resolution interpolated climate surfaces for global land areas.Crossref | GoogleScholarGoogle Scholar |

Hinze, W. H. F. (1994). Silviculture of pines. In ‘South African Forestry Handbook’. 3rd edn. (Ed. H. A. van der Sidje.) pp. 161–170. (The Southern African Institute of Forestry: Pretoria, South Africa.)

Ismail, R., Mutanga, O., and Kumar, L. (2010). Modelling the potential distribution of pine forests susceptible to Sirex noctilio infestation in Mpumalanga, South Africa. Transactions in GIS 14, 709–726.
Modelling the potential distribution of pine forests susceptible to Sirex noctilio infestation in Mpumalanga, South Africa.Crossref | GoogleScholarGoogle Scholar |

Jarvis, A., Reuter, H. I., Nelson, A., and Guevara, E. (2008). ‘Hole-filled SRTM for the Globe Version 4.’ Available at http://srtm.csi.cgiar.org [accessed March 2014].

Katsvanga, C. A. T. (2011). Chacma baboon (Papio ursinus) ecology and behavior in relation to bark stripping in Zimbabwe’s commercial pine plantations. Ph.D. Thesis, Bindura University of Science Education, Bindura, Zimbabwe.

Katsvanga, C. A. T., Mudyiwa, S. M., and Gwenzi, D. (2006). Bark stripping and population dynamics of baboon troops after chemical control in pine plantations of Zimbabwe. African Journal of Ecology 44, 413–416.
Bark stripping and population dynamics of baboon troops after chemical control in pine plantations of Zimbabwe.Crossref | GoogleScholarGoogle Scholar |

Katsvanga, C. A. T., Jimu, L., Mupangwa, J. F., and Zinner, D. (2009a). Susceptibility of pine stands to bark stripping by chacma baboons Papio ursinus in the Eastern Highlands of Zimbabwe. Current Zoology 55, 389–395.

Katsvanga, C. A. T., Jimu, L., Zinner, D., and Mupangwa, J. F. (2009b). Diet of pine plantation and non-plantation ranging baboon (Papio ursinus) groups with reference to bark consumption in the eastern highlands of Zimbabwe. Journal of Horticulture and Forestry 1, 168–175.

Kotze, H., and du Toit, B. (2012). Silviculture of industrial pine plantations in South Africa. In ‘South African Forestry Handbook’. 5th edn. (Eds B. V. Bredenkamp and S. J. Upfold.) pp. 123–140. (The Southern African Institute of Forestry: Pretoria, South Africa.)

Kotze, H., Kassier, H. W., Fletcher, Y., and Morley, T. (2012). Growth modelling and yield tables. In ‘South African Forestry Handbook’. 5th edn. (Eds B. V. Bredenkamp and S. J. Upfold.) pp. 175–210. (The Southern African Institute of Forestry: Pretoria, South Africa.)

Louw, J. H., Germishuizen, I., and Smith, C. W. (2011). A stratification of the South African forestry landscape based on climatic parameters. Southern Forests 73, 51–62.
A stratification of the South African forestry landscape based on climatic parameters.Crossref | GoogleScholarGoogle Scholar |

Maganga, S. L. S., and Wright, R. G. (1991). Bark-stripping by blue monkeys in a Tanzanian forest plantation. Tropical Pest Management 37, 169–174.
Bark-stripping by blue monkeys in a Tanzanian forest plantation.Crossref | GoogleScholarGoogle Scholar |

Magness, D. R., Huettmann, F., and Motrin, J. M. (2008). Using Random Forests to provide predicted species distribution maps as a metric for ecological inventory and monitoring programs. In ‘Application of Computational Intelligence in Biology: Current Trends and Open Problems. Vol. 122’. (Eds T. G. Smolinski, M. G. Milanove and A-E. Hassanien.) pp. 209–229. (Springer-Verlag: Berlin.)

Malan, F. S. (2012). Solid wood properties and qualities of South African grown pine and eucalypt species. In ‘South African Forestry Handbook’. 5th edn. (Eds B. V. Bredenkamp and S. J. Upfold.) pp. 621–637. (The Southern African Institute of Forestry: Pretoria, South Africa.)

Mc Namara, L. M. (2005). Nutrient concentration of inner bark tissue in pine trees in Mpumalanga in relation to baboon damage. M.Sc. Thesis, University of the Witwatersrand, Johannesburg, South Africa.

McGarigal, K., and Marks, B. J. (1994). FRAGSTATS: spatial pattern analysis program for quantifying landscape structure. General technical reports, PNW-GTR-351. USDA Forest Service, Pacific Northwest Research Station, Portland, OR. Available at https://www.umass.edu/landeco/pubs/mcgarigal.marks.1995.pdf [accessed 24 February 2016].

Mikich, S. B., and Liebsch, D. (2014a). Damage to forest plantations by tufted capuchins (Sapajus nigritus): too many monkeys or not enough fruits? Forest Ecology and Management 314, 9–16.
Damage to forest plantations by tufted capuchins (Sapajus nigritus): too many monkeys or not enough fruits?Crossref | GoogleScholarGoogle Scholar |

Mikich, S. B., and Liebsch, D. (2014b). Assessment of food supplementation and surveillance as techniques to reduce damage caused by black capuchin monkeys Sapajus nigritus to forest plantations. Current Zoology 60, 581–590.
Assessment of food supplementation and surveillance as techniques to reduce damage caused by black capuchin monkeys Sapajus nigritus to forest plantations.Crossref | GoogleScholarGoogle Scholar |

Nadel, R. L., O’Riain, J. M., and Scotcher, J. S. B. (2012). ‘Causes, Consequences and Solutions to Baboon Induced Damage within Commercial Plantations in Southern Africa.’ ICFR Bulletin Series 08/2012. (Institute for Commercial Forestry Research: Pietermaritzburg, South Africa.)

Ndagurwa, H. G. T. (2007). Bark stripping by chacma baboons (Papio ursinus) in relation to daily patterns of activity, feeding behaviour and home range in a pine plantation in eastern Zimbabwe. M.Sc. Thesis, University of Zimbabwe, Harare, Zimbabwe.

Ndagurwa, H. G. T. (2013). Bark stripping by chacma baboons (Papio hamadryas ursinus) as a possible prophylactic measure in a pine plantation in eastern Zimbabwe. African Journal of Ecology 51, 164–167.
Bark stripping by chacma baboons (Papio hamadryas ursinus) as a possible prophylactic measure in a pine plantation in eastern Zimbabwe.Crossref | GoogleScholarGoogle Scholar |

Pimentel, D., Stachow, U., Takacs, D. A., Brubaker, H. W., Dumas, A. R., Meaney, J. J., O’Neil, A. S., Onsi, D. E., and Corzilius, D. B. (1992). Conserving biological diversity in agricultural/forestry systems. Bioscience 42, 354–362.
Conserving biological diversity in agricultural/forestry systems.Crossref | GoogleScholarGoogle Scholar |

Powers, R. F. (2001). Assessing potential sustainable wood yield. In ‘The Forests Handbook. Vol. 2. Applying Forest Science for Sustainable Management’. (Ed. J. Evans.) pp. 105–128. (Blackwell Science Ltd: Oxford, UK.)

Powers, D. M. W. (2011). Evaluation: from precision, recall and F-measure to ROC, informedness, markedness & correlation. Journal of Machine Learning Technologies 2, 37–63.

R Core Team (2014). ‘R: a Language End Environment for Statistical Computing.’ (R Foundation for Statistical Computing: Vienna, Austria.)

Rogers, M. E., Tutin, C. E. G., Williamson, E. A., Parnell, R. J., Voysey, B. C., and Fernandez, M. (1994). Seasonal feeding on bark by gorillas: an unexpected keystone food? In ‘Current Primatology. Vol. 1’. (Eds B. Thierry, J. R. Anderson, J. J. Roedes and N. Herrenschmidt.) pp. 37–43. (Université Louis Pasteur: Strasbourg, France.)

Seagle, S. W., and Sturtevant, B. R. (2005). Forest productivity predicts invertebrate biomass and ovenbird (Seiurus aurocapillus) reproduction in Appalacchian landscapes. Ecology 86, 1531–1539.
Forest productivity predicts invertebrate biomass and ovenbird (Seiurus aurocapillus) reproduction in Appalacchian landscapes.Crossref | GoogleScholarGoogle Scholar |

Seidl, R., Schelhaas, M. J., and Lexer, M. J. (2011). Unraveling the drivers of intensifying forest disturbance regimes in Europe. Global Change Biology 17, 2842–2852.
Unraveling the drivers of intensifying forest disturbance regimes in Europe.Crossref | GoogleScholarGoogle Scholar |

van Rijsbergen, C. J. (1979). ‘Information Retrieval.’ 2nd edn. (Butterworths: London.)