Selecting soil properties for assessment of soil aggregation using principal component and clustering analyses
Pelin Alaboz
+ Author Affiliations
- Author Affiliations
Isparta University of Applied Sciences, Department of Soil Science and Plant Nutrition, Isparta, Turkey. Email: pelinalaboz@isparta.edu.tr
Soil Research - https://doi.org/10.1071/SR20031
Submitted: 29 January 2020 Accepted: 22 September 2020 Published online: 5 November 2020
Abstract
Aggregation is an important factor among physical soil parameters and affects soil quality. In this study, some soil physical (field capacity, wilting point and sand, silt and clay contents), chemical (pH, electrical conductivity, CaCO3, organic matter and exchangeable Na, Ca, Mg and K) and biological properties (CO2 from respiration and urease, dehydrogenase, β-glucosidase, alkaline phosphatase and acid phosphatase activities) were examined. Some of these properties were eliminated by principal component and clustering analyses to create a minimum dataset. Correlations were evaluated between selected properties and the percentage aggregation of micro (<0.25 mm) and macro aggregates (0.25–4 mm). Sand, Mg, pH, organic matter, urease, dehydrogenase, alkaline phosphatase and β-glucosidase properties were selected after principal component and clustering analyses. The highest correlation was between the percentage of micro aggregation and urease activity (0.545, P < 0.01). For macro aggregates, the highest correlation was with organic material (0.560, P < 0.01). A negative correlation was observed between macro aggregation percentage and sand content (−0.410, P < 0.01), with a similar relationship for micro aggregation and sand content (–0.450, P < 0.01), but there were positive relationships with other properties. The exchangeable magnesium content showed similar relationships for both aggregate sizes (0.430 and 0.440, P < 0.01). The correlations of aggregation with other enzymes and pH were nonsignificant (P > 0.05). In general, the highest correlation for micro aggregation was with enzyme activity.
Keywords: aggregation, clustering analysis, enzyme activity, principal component analysis, soil properties.
References
Alaboz P, Demir S, Başayiğit L, Işildar AA (2019) Determination of some properties of cereal cultivated soils based on great soil groups in Isparta province. Journal of Central Research Institute for Field Crops 28, 67–79.Arcak S, Kütük AC, Haktanir K, Çayci G (1997) The effects of tea wastes on soil enzyme activity and nitrification. Journal of Engineering Sciences 3, 261–266.
Beyer L, Waehendorf C, Elsner DC, Knabe R (1993) Suitability of dehydrogenase activity assay as an index of soil biological activity. Biology and Fertility of Soils 16, 52–56.
| Suitability of dehydrogenase activity assay as an index of soil biological activity.Crossref | GoogleScholarGoogle Scholar |
Błońska E, Lasota J, Zwydak M (2017) The relationship between soil properties, enzyme activity and land use. Forest Research Papers 78, 39–44.
| The relationship between soil properties, enzyme activity and land use.Crossref | GoogleScholarGoogle Scholar |
Bouyoucos GJ (1962) Hydrometer method improved for making particle size analyses of soils. Agronomy Journal 54, 464–465.
| Hydrometer method improved for making particle size analyses of soils.Crossref | GoogleScholarGoogle Scholar |
Bronick CJ, Lal R (2005) Soil structure and management: a review. Geoderma 124, 3–22.
| Soil structure and management: a review.Crossref | GoogleScholarGoogle Scholar |
Çepel N (1988) ‘Soil science textbook; characteristics of forest soils, formation, properties and soil evaluation of soils.’ (Istanbul University Faculty of Forestry: Istanbul)
Chan KY, Heenan DP (1999) Lime-induced loss of soil organic carbon and effect on aggregate stability. Soil Science Society of America Journal 63, 1841–1844.
| Lime-induced loss of soil organic carbon and effect on aggregate stability.Crossref | GoogleScholarGoogle Scholar |
Christensen BT, Sorensen LH (1985) The distribution of native and labelled carbon between soil particle size fractions isolated from longterm incubation experiments. Journal of Soil Science 36, 219–229.
| The distribution of native and labelled carbon between soil particle size fractions isolated from longterm incubation experiments.Crossref | GoogleScholarGoogle Scholar |
Das SK, Varma A (2010) ‘Role of enzymes in maintaining soil health. Soil enzymology.’ (Springer)
Demiralay İ (1993) ‘Soil physical analysis.’ (Atatürk University Faculty of Agriculture: Erzurum)
Demirtok M, Kiliç Ş, Doğan K (2015) Mapping of microbial activities in the widespread soil series of Amik Plain. Soil-Water Journal 4, 14–20.
Dengiz O, Kizilkaya R, Erkocak A, Durmus M (2013) Variables of microbial response in natural soil aggregates for soil characterization in different fluvial land shapes. Geomicrobiology Journal 30, 100–107.
| Variables of microbial response in natural soil aggregates for soil characterization in different fluvial land shapes.Crossref | GoogleScholarGoogle Scholar |
DEV (Deutsche Einheitsverfahren) (1983) Deutsche einheitsverfahren zur wasser-, abwasser und schlammuntersuchung (standard methods for water, wastewater and sludge analysis). (Ed. Fachgruppe wasserchemie in der gesellschaft deutscher chemiker). (Verlag Chemie: Weinheim/Bergstrasse)
Doran JW, Parkin TB (1994) Defining and assessing soil quality. In ‘Defining soil quality for a sustainable environment’. SSSA Special Publication 35. (Eds JW Doran, DC Coleman, DF Bezdicek, BA Stewart) pp. 1–21. (SSSA ASA: Madison, WI)
Dorodnikov M, Blagodatskaya E, Blagodatsky S, Marhan S, Fangmeier A, Kuzyakov Y (2009) Stimulation of microbial extracellular enzyme activities by elevated CO2 depends on soil aggregate size. Global Change Biology 15, 1603–1614.
| Stimulation of microbial extracellular enzyme activities by elevated CO2 depends on soil aggregate size.Crossref | GoogleScholarGoogle Scholar |
Ebrahimi A, Schwartzman J, Cordero OX (2019) Multicellular behavior enables cooperation in microbial cell aggregates. Philosophical Transactions of the Royal Society B 374, 20190077
| Multicellular behavior enables cooperation in microbial cell aggregates.Crossref | GoogleScholarGoogle Scholar |
Edwards AP, Bremner JM (1967) Microaggregates in soils. Journal of Soil Science 18, 64–73.
| Microaggregates in soils.Crossref | GoogleScholarGoogle Scholar |
Erkocak A, Dengiz O (2019a) Variation of β-glucosidase enzyme activity and soil development with different slope and land cover under semi moist humid climate conditions. Journal of Soil Science and Plant Nutrition 7, 21–27.
Erkocak A, Dengiz O (2019b) Phosphatase enzyme activity in different soils formed on basaltic parent material under semi humid climate conditions. International Journal of Agriculture Environment and Food Sciences 3, 28–36.
FAO (1990) ‘Micronutrient assessment at the country level’. FAO Soil Bulletin 63. (Ed. M Sillanpa) (FAO: Rome)
Gülser C (2004) Determination of field capacity and permanent wilting point with pedotransfer functions related to soil physical and chemical properties. Journal of Faculty of Agriculture OMU 19, 19–23.
Gupta VVSR, Germida JJ (1988) Distribution of microbial biomass and its activity in different soil aggregate size classes as affected by cultivation. Soil Biology & Biochemistry 20, 777–786.
| Distribution of microbial biomass and its activity in different soil aggregate size classes as affected by cultivation.Crossref | GoogleScholarGoogle Scholar |
Helgason BL, Walley FL, Germida JJ (2010) No-till soil management increases microbial biomass and alters community profiles in soil aggregates. Applied Soil Ecology 46, 390–397.
| No-till soil management increases microbial biomass and alters community profiles in soil aggregates.Crossref | GoogleScholarGoogle Scholar |
Isermayer H (1952) Eine einfache methode zur bestimmung der bodenatmung und der karbonate im böden z. pflanzenaehr Bodenkd 5, 56–60.
Kacar B (2009) ‘Soil analysis’. (Nobel Publisher: Ankara). [in Turkish].
Karaca A, Cetin SC, Turgay OC, Kizilkaya R (2010) Soil enzymes as indication of soil quality. In ‘Soil enzymology’. (Eds G Shukla, A Varma) pp. 119–148. (Springer: Berlin Heidelberg)
Karaman MR, Brohi AR, Müftüoğlu NM, Öztaş T, Zengin M (2007) ‘Sustainable soil fertility.’ (Detay Publishing: Ankara). [in Turkish]
Kucuk C, Cevheri C (2018) Some microbiological properties in soil samples taken from maize grown fields in Sanliurfa. Aksaray University Journal of Science and Engineering 2, 28–40.
| Some microbiological properties in soil samples taken from maize grown fields in Sanliurfa.Crossref | GoogleScholarGoogle Scholar |
Li Y, Lindstrom M (2001) Evaluating soil quality–soil redistribution relationship on terraces and steep hillslope. Soil Science Society of America Journal 65, 1500–1508.
| Evaluating soil quality–soil redistribution relationship on terraces and steep hillslope.Crossref | GoogleScholarGoogle Scholar |
Li P, Zhang T, Wang X, Yu D (2013) Development of biological soil quality indicator system for subtropical China. Soil & Tillage Research 126, 112–118.
| Development of biological soil quality indicator system for subtropical China.Crossref | GoogleScholarGoogle Scholar |
Lin Y, Ye G, Kuzyakov Y, Liu D, Fan J, Ding W (2019) Long-term manure application increases soil organic matter and aggregation and alters microbial community structure and keystone taxa. Soil Biology & Biochemistry 134, 187–196.
| Long-term manure application increases soil organic matter and aggregation and alters microbial community structure and keystone taxa.Crossref | GoogleScholarGoogle Scholar |
Liu YR, Li X, Shen QR, Xu YC (2013) Enzyme activity in water-stable soil aggregates as affected by long-term application of organic manure and chemical fertiliser. Pedosphere 23, 111–119.
| Enzyme activity in water-stable soil aggregates as affected by long-term application of organic manure and chemical fertiliser.Crossref | GoogleScholarGoogle Scholar |
Martens DA (2000) Plant residue biochemistry regulates soil carbon cycling and carbon sequestration. Soil Biology & Biochemistry 32, 361–369.
| Plant residue biochemistry regulates soil carbon cycling and carbon sequestration.Crossref | GoogleScholarGoogle Scholar |
Nannipieri P (1994) The potential use of soil enzymes as indicators of productivity, sustainability and pollution. In ‘Soil biota: management in sustainable farming systems’. (Eds CE Pankhurst, BM Doube, VVSR Gupta, PR Grace) pp. 238–244. (CSIRO: Melbourne)
Nyamadzawo G, Nyamangara J, Nyamungafata P, Muzulu A (2009) Soil microbial biomass and mineralization of aggregate protected carbon in fallow-maize systems under conventional no tillage in Central Zimbabwe Soil & Tillage Research 102, 151–157.
| Soil microbial biomass and mineralization of aggregate protected carbon in fallow-maize systems under conventional no tillage in Central ZimbabweCrossref | GoogleScholarGoogle Scholar |
Özdemir N, Gülser C, Kizilkaya R, Durmuş ÖTK, Ekberli İ (2017) Effects of organic conditioner applications on dehydrogenase activity in soils having different pH levels. Atatürk Univ. Journal of the Agricultural Faculty 49, 21–27.
Phillips CL, Nickerson N (2015) ‘Soil respiration. Reference module in earth systems and environmental sciences’. (Elsevier)
RStudio (2019) Programs download. Available at https://rstudio.com/products/rstudio/download/ [verified 11 November 2019].
Sağlam M, Dengiz O, Saygin F (2015) Assessment of horizontal and vertical variabilities of soil quality using multivariate statistics and geostatistical methods. Communications in Soil Science and Plant Analysis 46, 1677–1697.
| Assessment of horizontal and vertical variabilities of soil quality using multivariate statistics and geostatistical methods.Crossref | GoogleScholarGoogle Scholar |
Sahin HC, Dogan K (2016) Determination of microbial activity and interaction of this activation and some soil properties in some widespread Amik Plain soil series. Journal of Agricultural Faculty of Mustafa Kemal University 21, 92–102.
Schachtschabel P, Blume HP, Brummer G, Hartge KH, Schwertmann U (1995) Soil science. (Translators H Ozbek, Z Kaya, M Gok, H Kaptan) (Faculty of Agriculture: Adana)
Schlüter S, Henjes S, Zawallich J, Bergaust L, Horn M, Ippisch O, Vogel H-J, Dörsch P (2018) Denitrification in soil aggregate analogues-effect of aggregate size and oxygen diffusion. Frontiers in Environmental Science 6, 17
| Denitrification in soil aggregate analogues-effect of aggregate size and oxygen diffusion.Crossref | GoogleScholarGoogle Scholar |
Şeker C, Özaytekin HH, Negiş H, Gümüş İ, Dedeoğlu M, Atmaca E, Karaca Ü (2017) Identification of regional soil quality factors and indicators: a case study on an alluvial plain (central Turkey). Solid Earth 8, 583–595.
| Identification of regional soil quality factors and indicators: a case study on an alluvial plain (central Turkey).Crossref | GoogleScholarGoogle Scholar |
Sharma S (1996) ‘Applied multivariate techniques’. (John Wiley and Sons Inc.: New York)
Sharma KL, Mandal UK, Srinivas K, Vittal KPR, Mandal B, Grace JK, Ramesh V (2005) Long-term soil management effects on crop yields and soil quality in a dryland Alfisol. Soil & Tillage Research 83, 246–259.
| Long-term soil management effects on crop yields and soil quality in a dryland Alfisol.Crossref | GoogleScholarGoogle Scholar |
Six J, Elliott ET, Paustian K (2000) Soil structure and soil organic matter: II. a normalized stability index and the effect of mineralogy. Soil Science Society of America Journal 64, 1042–1049.
| Soil structure and soil organic matter: II. a normalized stability index and the effect of mineralogy.Crossref | GoogleScholarGoogle Scholar |
Six J, Bossuyt H, Degryze S, Denef K (2004) A history of research on the link between (micro) aggregates, soil biota, and soil organic matter dynamics. Soil & Tillage Research 79, 7–31.
| A history of research on the link between (micro) aggregates, soil biota, and soil organic matter dynamics.Crossref | GoogleScholarGoogle Scholar |
Stine MA, Weil RR (2002) The relationship between soil quality and crop productivity across three tillage systems in south central Honduras. American Journal of Alternative Agriculture 17, 2–8.
Tabatabai MA, Bremner JM (1972) Assay of urease activity in soils. Soil Biology & Biochemistry 4, 479–487.
| Assay of urease activity in soils.Crossref | GoogleScholarGoogle Scholar |
Tarafdar JC, Marschner H (1994) Phosphatase activity in the rhizosphere and hyphosphere of VA mycorrhizal wheat supplied with inorganic and organic phosphorus. Soil Biology & Biochemistry 26, 387–395.
| Phosphatase activity in the rhizosphere and hyphosphere of VA mycorrhizal wheat supplied with inorganic and organic phosphorus.Crossref | GoogleScholarGoogle Scholar |
Tatlidil H (2002) ‘Applied multivariate statistical analysis’. (Academy Printing House: Ankara)
Thalmann A (1967) Über die mikrobielle aktivitaet und ihre beziehungen zur fruchtbarkeitsmerkmalen einiger ackerböden unter besonderer berücksichtigung der dehydrogenase aktivitaet (TTC-Reduktion). Diss. Giessen (FRG).
Tisdall JM, Oades J (1982) Organic matter and water‐stable aggregates in soils. Journal of Soil Science 33, 141–163.
| Organic matter and water‐stable aggregates in soils.Crossref | GoogleScholarGoogle Scholar |
Totsche KU, Amelung W, Gerzabek MH, Guggenberger G, Klumpp E, Knief C, Ray N (2018) Microaggregates in soils. Journal of Plant Nutrition and Soil Science 181, 104–136.
| Microaggregates in soils.Crossref | GoogleScholarGoogle Scholar |
TSMS (2018) Turkish State Meteorological Service. Turkey Ankara. Available at http://www.mgm.gov.tr/veridegerlendirme/yillik-toplam-yagis-verileri.aspx [verified 11 August 2018].
Umer MI, Rajab SM (2012) Correlation between aggregate stability and microbiological activity in two Russian soil types. Eurasian Journal of Soil Science 1, 45–50.
US Salinity Laboratory Staff (1954) Diagnosis and improvement of salina and alkali soils. Agricultural Handbook 60. (Ed. LA Richards) USDA. Available at https://www.ars.usda.gov/ARSUserFiles/20360500/hb60_pdf/hb60complete.pdf [verified 12 October 2020].
USDA (2020) Soil respiration. Soil quality kit. Available at https://www.nrcs.usda.gov/Internet/FSE_DOCUMENTS/nrcs142p2_053267.pdf [verified 1 June 2020].
Walkley A, Black IA (1934) An examination of Degtjareff method for determining soil organic matter and a proposed modification of the chromic acid titration method. Soil Science 37, 29–38.
| An examination of Degtjareff method for determining soil organic matter and a proposed modification of the chromic acid titration method.Crossref | GoogleScholarGoogle Scholar |
Wang R, Dorodnikov M, Yang S, Zhang Y, Filley TR, Turco RF, Zhang Y, Xu Z, Li H, Jiang Y (2015) Responses of enzymatic activities within soil aggregates to 9-year nitrogen and water addition in a semi-arid grassland. Soil Biology & Biochemistry 81, 159–167.
| Responses of enzymatic activities within soil aggregates to 9-year nitrogen and water addition in a semi-arid grassland.Crossref | GoogleScholarGoogle Scholar |
Wilding LP (1985) Spatial variability: Its documentation, accommodation and implication to soil surveys,. In ‘Soil spatial variability’ (Eds DR Nielsen, J Bouma) pp. 166–194. (Pudoc: Wageningen, Netherlands)
Wolińska A, Stępniewska Z (2012) Dehydrogenase activity in the soil environment. In ‘Dehydrogenases.’ (Ed RA Canuto). pp. 183–210. (Intech Open)
