Register      Login
Soil Research Soil Research Society
Soil, land care and environmental research
RESEARCH ARTICLE (Open Access)

Feasibility of handheld mid-infrared spectroscopy to predict particle size distribution: influence of soil field condition and utilisation of existing spectral libraries

Leslie J. Janik https://orcid.org/0000-0003-0259-1097 A C , José M. Soriano-Disla A B and Sean T. Forrester A
+ Author Affiliations
- Author Affiliations

A CSIRO Environmental Contaminant Mitigation and Technologies Program, CSIRO Land and Water, Waite Campus, Waite Road, Urrbrae, 5064, South Australia, Australia.

B Present address: Technology Centre for Energy and Environment (CETENMA), Polígono Industrial Cabezo Beaza, C/ Sofía 6–13, 30353, Cartagena, Spain.

C Corresponding author. Email: les.janik@csiro.au

Soil Research 58(6) 528-539 https://doi.org/10.1071/SR20097
Submitted: 6 April 2020  Accepted: 9 June 2020   Published: 29 July 2020

Journal Compilation © CSIRO 2020 Open Access CC BY NC ND

Abstract

Partial least-squares regression (PLSR), using spectra from a handheld mid-infrared instrument (the ExoScan), was tested for the prediction of particle size distribution. Soils were sampled from agricultural sites in the Eyre Peninsula under field conditions and with varying degrees of soil preparation. Issues relevant to field sampling were identified, such as sample heterogeneity, micro-aggregate size and moisture content. The PLSR models for particle size distribution were derived with the varying degrees of preparation. Cross-validation of clay content in the as-received in situ soils resulted in low accuracy: coefficient of determination (R2) = 0.55 and root mean square error (RMSE) = 7%. This was improved by manual mixing, drying, sieving to < 2 mm and fine grinding, resulting in R2 values of 0.64, 0.75 and 0.81, and RMSE of 6%, 5% and 4% respectively; less improvement resulted for sand, with corresponding R2 values of 0.82, 0.88, 0.91 and 0.89, and RMSE of 10%, 8%, 6% and 7%. Predictions for silt remained poor. Where only archival benchtop calibration models were available, predictions of clay contents for spectra scanned with the handheld ExoScan spectrometer resulted in high error because of spectral intensity mismatch between benchtop and handheld spectra (R2 = 0.72, RMSE = 24.2% and bias = 21%). Pre-processing the benchtop spectra by piecewise direct standardisation resulted in more successful predictions (R2 = 0.73, RMSE = 6.7% and bias = –1.5%), confirming the advantage of piecewise direct standardisation for prediction from archival spectral libraries.

Additional keywords: DRIFT, partial least-squares regression, particle size analysis, piecewise direct standardisation.


References

Barthès BG, Brunet D, Ferrer H, Chotte JL, Feller C (2006) Determination of total carbon and nitrogen content in a range of tropical soils using near infrared spectroscopy: Influence of replication and sample grinding and drying. Journal of Near Infrared Spectroscopy 14, 341–348.
Determination of total carbon and nitrogen content in a range of tropical soils using near infrared spectroscopy: Influence of replication and sample grinding and drying.Crossref | GoogleScholarGoogle Scholar |

Bowman G, Hutka J (2002) Particle size analysis. In ‘Soil physical measurement and interpretation for land evaluation’. (Eds N McKenzie, K Coughlan, H Cresswell) pp. 224–239. (CSIRO Publishing: Melbourne, Vic.)

Bricklemyer RS, Brown DJ (2010) On-the-go VisNIR: Potential and limitations for mapping soil clay and organic carbon. Computers and Electronics in Agriculture 70, 209–216.
On-the-go VisNIR: Potential and limitations for mapping soil clay and organic carbon.Crossref | GoogleScholarGoogle Scholar |

Brunet D, Barthès BG, Chotte JL, Feller C (2007) Determination of carbon and nitrogen contents in Alfisols, Oxisols and Ultisols from Africa and Brazil using NIRS analysis: effects of sample grinding and set heterogeneity. Geoderma 139, 106–117.
Determination of carbon and nitrogen contents in Alfisols, Oxisols and Ultisols from Africa and Brazil using NIRS analysis: effects of sample grinding and set heterogeneity.Crossref | GoogleScholarGoogle Scholar |

Fooladmand HR (2008) Estimating cation exchange capacity using soil textural data and soil organic matter content: a case study for the south of Iran. Archives of Agronomy and Soil Science 54, 381–386.
Estimating cation exchange capacity using soil textural data and soil organic matter content: a case study for the south of Iran.Crossref | GoogleScholarGoogle Scholar |

Forrester ST, Janik LJ, Soriano-Disla JM, Mason S, Burkitt L, Moody P, Gourley CJP, McLaughlin MJ (2015) Use of handheld mid-infrared spectroscopy and partial least-squares regression for the prediction of the phosphorus buffering index in Australian soils. Soil Research 53, 67–80.
Use of handheld mid-infrared spectroscopy and partial least-squares regression for the prediction of the phosphorus buffering index in Australian soils.Crossref | GoogleScholarGoogle Scholar |

Fruzangohar M, Janik L, McLaughlin M (2017) Direct comparison between selected field infrared instruments for the prediction of soil properties in grain cropping soils. Final report, GRDC project CSO00045: Soil infrared capability, GRDC.

Geladi P, Kowalski BR (1986) Partial least-squares regression: a tutorial. Analytica Chimica Acta 185, 1–17.
Partial least-squares regression: a tutorial.Crossref | GoogleScholarGoogle Scholar |

Hu HC, Tian FQ, Hu HP (2011) Soil particle size distribution and its relationship with soil water and salt under mulched drip irrigation in Xinjiang of China. Science China. Technological Sciences 54, 1568–1574.
Soil particle size distribution and its relationship with soil water and salt under mulched drip irrigation in Xinjiang of China.Crossref | GoogleScholarGoogle Scholar |

Hutengs C, Ludwig B, Jung A, Eisele A, Vohland M (2018) Comparison of portable and bench-top spectrometers for mid-infrared diffuse reflectance measurements of soils. Sensors 18, 993
Comparison of portable and bench-top spectrometers for mid-infrared diffuse reflectance measurements of soils.Crossref | GoogleScholarGoogle Scholar |

Hutengs C, Seidel M, Oertel F, Ludwig B, Vohland M (2019) In situ and laboratory soil spectroscopy with portable visible-to-near-infrared and mid-infrared instruments for the assessment of organic carbon in soils. Geoderma 355, 113900
In situ and laboratory soil spectroscopy with portable visible-to-near-infrared and mid-infrared instruments for the assessment of organic carbon in soils.Crossref | GoogleScholarGoogle Scholar |

Janik LJ, Merry RH, Skjemstad JO (1998) Can mid infrared diffuse reflectance analysis replace soil extractions? Australian Journal of Experimental Agriculture 38, 681–696.
Can mid infrared diffuse reflectance analysis replace soil extractions?Crossref | GoogleScholarGoogle Scholar |

Janik LJ, Merry RH, Forrester ST, Lanyon DM, Rawson A (2007) Rapid prediction of soil water retention using mid infrared spectroscopy. Soil Science Society of America Journal 71, 507–514.
Rapid prediction of soil water retention using mid infrared spectroscopy.Crossref | GoogleScholarGoogle Scholar |

Janik LJ, Forrester ST, Rawson A (2009) The prediction of soil chemical and physical properties from mid-infrared spectroscopy and combined partial least-squares regression and neural networks (PLS-NN) analysis. Chemometrics and Intelligent Laboratory Systems 97, 179–188.
The prediction of soil chemical and physical properties from mid-infrared spectroscopy and combined partial least-squares regression and neural networks (PLS-NN) analysis.Crossref | GoogleScholarGoogle Scholar |

Janik LJ, Soriano-Disla JM, Forrester ST, McLaughlin MJ (2016a) Moisture effects on diffuse reflection infrared spectra of contrasting minerals and soils: a mechanistic interpretation. Vibrational Spectroscopy 86, 244–252.
Moisture effects on diffuse reflection infrared spectra of contrasting minerals and soils: a mechanistic interpretation.Crossref | GoogleScholarGoogle Scholar |

Janik LJ, Soriano-Disla JM, Forrester ST, McLaughlin MJ (2016b) Effects of soil composition and preparation on the prediction of particle size distribution using mid-infrared spectroscopy and partial least-squares regression. Soil Research 54, 889–904.
Effects of soil composition and preparation on the prediction of particle size distribution using mid-infrared spectroscopy and partial least-squares regression.Crossref | GoogleScholarGoogle Scholar |

Ji W, Viscarra Rossel RA, Shi Z (2015) Improved estimates of organic carbon using proximally sensed vis–NIR spectra corrected by piecewise direct standardization. European Journal of Soil Science 66, 670–678.
Improved estimates of organic carbon using proximally sensed vis–NIR spectra corrected by piecewise direct standardization.Crossref | GoogleScholarGoogle Scholar |

Ji W, Adamchuk VI, Biswas A, Dhawale NM, Sudarsan B, Zhang Y, Viscarra Rossel RA, Shi Z (2016) Assessment of soil properties in situ using a prototype portable MIR spectrometer in two agricultural fields. Biosystems Engineering 152, 14–27.
Assessment of soil properties in situ using a prototype portable MIR spectrometer in two agricultural fields.Crossref | GoogleScholarGoogle Scholar |

Kennard RW, Stone LA (1969) Computer aided design of experiments. Technometrics 11, 137–148.
Computer aided design of experiments.Crossref | GoogleScholarGoogle Scholar |

Knadel M, Stenberg B, Deng F, Thomsen A, Greve MH (2013) Comparing predictive abilities of three visible-near infrared spectrophotometers for soil organic carbon and clay determination. Journal of Near Infrared Spectroscopy 21, 67–80.
Comparing predictive abilities of three visible-near infrared spectrophotometers for soil organic carbon and clay determination.Crossref | GoogleScholarGoogle Scholar |

McKenzie N, Coughlan K, Cresswell H (Eds) (2002) In ‘Soil physical measurement and interpretation for land evaluation.’ pp 224–239. (CSIRO Publishing: Melbourne)

Nguyen TT, Janik LJ, Raupach M (1991) Diffuse reflectance infrared Fourier transform (DRIFT) spectroscopy in soil studies. Australian Journal of Soil Research 29, 49–67.
Diffuse reflectance infrared Fourier transform (DRIFT) spectroscopy in soil studies.Crossref | GoogleScholarGoogle Scholar |

Peng Y, Knadel M, Gislum R, Schelde K, Thomsen A, Greve MH (2014) Quantification of SOC and clay content using visible near-infrared reflectance–mid-infrared reflectance spectroscopy with jack-knifing partial least squares regression. Soil Science 179, 325–332.
Quantification of SOC and clay content using visible near-infrared reflectance–mid-infrared reflectance spectroscopy with jack-knifing partial least squares regression.Crossref | GoogleScholarGoogle Scholar |

Poggio M, Brown DJ, Bricklemyer RS (2017) Comparison of V is–NIR on in situ, intact core and dried, sieved soil to estimate clay content at field to regional scales. European Journal of Soil Science 68, 434–448.
Comparison of V is–NIR on in situ, intact core and dried, sieved soil to estimate clay content at field to regional scales.Crossref | GoogleScholarGoogle Scholar |

Reeves JB, McCarty GW, Reeves VB (2001) Mid-infrared diffuse reflectance spectroscopy for the quantitative analysis of agricultural soils. Journal of Agricultural and Food Chemistry 49, 766–772.
Mid-infrared diffuse reflectance spectroscopy for the quantitative analysis of agricultural soils.Crossref | GoogleScholarGoogle Scholar | 11262026PubMed |

Reeves JB, McCarty GW, Hively WD (2010) Mid-versus near-infrared spectroscopy for on-site analysis of soil. In ‘Proximal soil sensing’. (Eds RA Viscarra-Rossel, AB McBratney, B Minasny) pp. 133–142. (Springer Science+Business Media: New York)

Soriano-Disla JM, Janik LJ, Viscarra Rossel RA, McDonald LM, McLaughlin MJ (2014) The performance of visible, near and mid–infrared spectroscopy for prediction of soil physical, chemical and biological properties. Applied Spectroscopy Reviews 49, 139–186.
The performance of visible, near and mid–infrared spectroscopy for prediction of soil physical, chemical and biological properties.Crossref | GoogleScholarGoogle Scholar |

Soriano-Disla JM, Janik LJ, Allen DJ, McLaughlin MJ (2017) Evaluation of the performance of portable visible-infrared instruments for the prediction of soil properties. Biosystems Engineering 161, 24–36.
Evaluation of the performance of portable visible-infrared instruments for the prediction of soil properties.Crossref | GoogleScholarGoogle Scholar |

Soriano-Disla JM, Janik LJ, McLaughlin MJ (2018) Assessment of cyanide contamination in soils with a handheld mid-infrared spectrometer. Talanta 178, 400–409.
Assessment of cyanide contamination in soils with a handheld mid-infrared spectrometer.Crossref | GoogleScholarGoogle Scholar | 29136840PubMed |

Van der Marel HW, Beutelspacher H (Eds) (1976) Clay and related minerals. In ‘Atlas of infrared spectroscopy of clay minerals and their admixtures’. (Elsevier Scientific: Amsterdam)

Viscarra Rossel RA, Webster R (2012) Predicting soil properties from the Australian soil visible-near infrared spectroscopic database. European Journal of Soil Science 63, 848–860.
Predicting soil properties from the Australian soil visible-near infrared spectroscopic database.Crossref | GoogleScholarGoogle Scholar |

Viscarra Rossel RA, Cattle SR, Ortega A, Fouad Y (2009) In situ measurements of soil colour, mineral composition and clay content by vis–NIR spectroscopy. Geoderma 150, 253–266.
In situ measurements of soil colour, mineral composition and clay content by vis–NIR spectroscopy.Crossref | GoogleScholarGoogle Scholar |

Viscarra Rossel RA, Lobsey CR, Sharman C, Flick P, McLachlan G (2017) Novel proximal sensing for monitoring soil organic C stocks and condition. Environmental Science & Technology 51, 5630–5641.
Novel proximal sensing for monitoring soil organic C stocks and condition.Crossref | GoogleScholarGoogle Scholar |

Wang Y, Kowalski BR (1992) Calibration transfer and measurement stability of near-infrared spectrometers Applied Spectroscopy 46, 764–771.
Calibration transfer and measurement stability of near-infrared spectrometersCrossref | GoogleScholarGoogle Scholar |

Wang Y, Veltkamp DJ, Kowalski BR (1991) Multivariate instrument standardization. Analytical Chemistry 63, 2750–2756.
Multivariate instrument standardization.Crossref | GoogleScholarGoogle Scholar |

Williams PC (1987) Variables affecting near-infrared reflectance spectroscopy. In ‘Near-infrared technology in the agricultural and food industries’. (Eds PC Williams, KH Norris) pp. 143–167. (American Association of Cereal Chemists Inc.: St Paul, MN, USA)

Xue-Ying L, Yan L, Mei-Rong L, Yan Z, Ping-Ping F (2018) Calibration transfer of soil total carbon and total nitrogen between two different types of soils based on visible-near-infrared reflectance spectroscopy. Hindawi Journal of Spectroscopy 2018, 1–10.
Calibration transfer of soil total carbon and total nitrogen between two different types of soils based on visible-near-infrared reflectance spectroscopy.Crossref | GoogleScholarGoogle Scholar |

Zhang Y, Biswas A, Ji W, Adamchuk VI (2017) Depth-specific prediction of soil properties in situ using vis-NIR spectroscopy. Soil Science Society of America Journal 81, 993–1004.
Depth-specific prediction of soil properties in situ using vis-NIR spectroscopy.Crossref | GoogleScholarGoogle Scholar |