Partitioning of total soil respiration into root, rhizosphere and basal-soil CO2 fluxes in contrasting rice production systems
S. Neogi A B , P. K. Dash A , P. Bhattacharyya A D , S. R. Padhy A , K. S. Roy A C and A. K. Nayak AA Division of Crop Production, ICAR-National Rice Research Institute, Cuttack, Odisha, India.
B Global Centre for Environment and Energy, Ahmedabad University, Ahmedabad, Gujarat, India.
C Department of Environmental Science and Engineering, Marwadi University, Rajkot, Gujarat, India.
D Corresponding author. Email: pratap162001@gmail.com
Soil Research 58(6) 592-601 https://doi.org/10.1071/SR20006
Submitted: 7 January 2020 Accepted: 4 June 2020 Published: 23 July 2020
Abstract
Soil respiration contributes significantly to ecosystem respiration and is vital in the context of climate change research. In a season-long experiment we studied total soil respiration (TSR) and its partitioning into root respiration, rhizospheric respiration (RhR) and basal-soil respiration in four contrasting rice production systems: irrigated lowland (IL) (cv. Gayatri); organic nutrient managed irrigated lowland (OIL) (cv. Geetanjali); system of rice intensification (SRI) (cv. Swarna); and aerobic rice system (Aerobic) (cv. APO). We considered TSR to be the sum of root respiration, RhR and basal-soil respiration. Irrespective of the rice production system, TSR was higher at panicle initiation stage. Considering all four systems, the RhR contributed the most (59–83%) and basal-soil respiration the least (10–19%) to the TSR. Mean RhR showed the trend of Aerobic > SRI > IL > OIL across the growing seasons and indicated higher rhizosphere activities in the aerobic system. Mean root respiration showed a trend of IL > OIL > SRI > Aerobic and mean basal-soil respiration had SRI > IL > OIL > Aerobic. Soil labile carbon pools and heterotrophic populations were higher in OIL and dehydrogenase activity was higher in SRI. Microbial biomass carbon, readily mineralisable carbon, dehydrogenase activity and the heterotroph population showed positive correlations with RhR. Hence, regulation of RhR is crucial and can be achieved through rhizosphere modifications linked with labile carbon pools and soil enzymatic activities by plant physiological modification or through soil carbon stabilisation.
Additional keywords: rhizosphere respiration, rice production systems, soil carbon pools, soil respiration partitioning.
References
Anderegg WR, Martinez-Vilalta J, Cailleret M, Camarero JJ, Ewers BE, Galbraith D, Gessler A, Grote R, Huang CY, Levick SR, Powell TL (2016) When a tree dies in the forest: scaling climate-driven tree mortality to ecosystem water and carbon fluxes. Ecosystems 19, 1133–1147.| When a tree dies in the forest: scaling climate-driven tree mortality to ecosystem water and carbon fluxes.Crossref | GoogleScholarGoogle Scholar |
Arora P, Chaudhry S (2017) Dependency of rate of soil respiration on soil parameters and climatic factors in different tree plantations at Kurukshetra, India. Tropical Ecology 58, 573–581.
Bais HP, Weir TL, Perry LG, Gilroy S, Vivanco JM (2006) The role of root exudates in rhizosphere interactions with plants and other organisms. Annual Review of Plant Biology 57, 233–266.
| The role of root exudates in rhizosphere interactions with plants and other organisms.Crossref | GoogleScholarGoogle Scholar | 16669762PubMed |
Bhattacharyya P, Roy KS, Neogi S, Dash PK, Nayak AK, Mohanty S, Rao KS (2013) Impact of elevated CO2 and temperature on soil C and N dynamics in relation to CH4 and N2O emissions from tropical flooded rice (Oryza sativa L.). The Science of the Total Environment 461-462, 601–611.
| Impact of elevated CO2 and temperature on soil C and N dynamics in relation to CH4 and N2O emissions from tropical flooded rice (Oryza sativa L.).Crossref | GoogleScholarGoogle Scholar | 23764672PubMed |
Bhattacharyya P, Neogi S, Roy KS, Dash PK, Nayak AK, Mohapatra T (2014) Tropical low land rice ecosystem is a net carbon sink. Agriculture, Ecosystems & Environment 189, 127–135.
| Tropical low land rice ecosystem is a net carbon sink.Crossref | GoogleScholarGoogle Scholar |
Bhattacharyya P, Roy KS, Das M, Ray S, Balachandar D, Karthikeyan S, Mohapatra T (2016) Elucidation of rice rhizosphere metagenome in relation to methane and nitrogen metabolism under elevated carbon dioxide and temperature using whole genome metagenomic approach. The Science of the Total Environment 542, 886–898.
| Elucidation of rice rhizosphere metagenome in relation to methane and nitrogen metabolism under elevated carbon dioxide and temperature using whole genome metagenomic approach.Crossref | GoogleScholarGoogle Scholar | 26556753PubMed |
Bowden RD, Davidson E, Savage K, Arabia C, Steudler P (2004) Chronic nitrogen additions reduce total soil respiration and microbial respiration in temperate forest soils at the Harvard Forest. Forest Ecology and Management 196, 43–56.
| Chronic nitrogen additions reduce total soil respiration and microbial respiration in temperate forest soils at the Harvard Forest.Crossref | GoogleScholarGoogle Scholar |
Casida LE, Klein DA, Santoro T (1964) Soil dehydrogenase activity. Soil Science 98, 371–376.
| Soil dehydrogenase activity.Crossref | GoogleScholarGoogle Scholar |
Delogu E, Le Dantec V, Mordelet P, Ceschia E, Aubinet M, Buysse P, Pattey E (2017) Improved methodology to quantify the temperature sensitivity of the soil heterotrophic respiration in croplands. Geoderma 296, 18–29.
| Improved methodology to quantify the temperature sensitivity of the soil heterotrophic respiration in croplands.Crossref | GoogleScholarGoogle Scholar |
Dick WA, Tabatabai MA (1992) Potential uses of soil enzymes. In ‘Soil microbial ecology. Applications in agricultural and environmental management’. (Ed. FB Metting) pp. 95–127. (Marcel Dekker: New York)
Dossou-Yovo ER, Brüggemann N, Ampofo E, Igue AM, Jesse N, Huat J, Agbossou EK (2016) Combining no-tillage, rice straw mulch and nitrogen fertilizer application to increase the soil carbon balance of upland rice field in northern Benin. Soil & Tillage Research 163, 152–159.
| Combining no-tillage, rice straw mulch and nitrogen fertilizer application to increase the soil carbon balance of upland rice field in northern Benin.Crossref | GoogleScholarGoogle Scholar |
Douthe C, Gago J, Ribas-Carbó M, Núñez R, Pedrol N, Flexas J (2018) Measuring photosynthesis and respiration with infrared gas analysers. In ‘Advances in plant ecophysiology techniques.’ (Eds. AM Sánchez-Moreiras, MJ Reigosa) pp. 51–75. (Springer, Cham)
Finn D, Page K, Catton K, Strounina E, Kienzle M, Robertson F, Armstrong R, Dalal R (2015) Effect of added nitrogen on plant litter decomposition depends on initial soil carbon and nitrogen stoichiometry. Soil Biology & Biochemistry 91, 160–168.
| Effect of added nitrogen on plant litter decomposition depends on initial soil carbon and nitrogen stoichiometry.Crossref | GoogleScholarGoogle Scholar |
Finzi AC, Abramoff RZ, Spiller KS, Brzostek ER, Darby BA, Kramer MA, Phillips RP (2015) Rhizosphere processes are quantitatively important components of terrestrial carbon and nutrient cycles. Global Change Biology 21, 2082–2094.
| Rhizosphere processes are quantitatively important components of terrestrial carbon and nutrient cycles.Crossref | GoogleScholarGoogle Scholar | 25421798PubMed |
Gallo M, Amonette R, Lauber C, Sinsabaugh RL, Zak DR (2004) Microbial community structure and oxidative enzyme activity in nitrogen-amended north temperate forest soils. Microbial Ecology 48, 218–229.
| Microbial community structure and oxidative enzyme activity in nitrogen-amended north temperate forest soils.Crossref | GoogleScholarGoogle Scholar | 15546042PubMed |
He Y, Siemens J, Amelung W, Goldbach H, Wassmann R, Alberto MCR, Lücke A, Lehndorff E (2015) Carbon release from rice roots under paddy rice and maize–paddy rice cropping. Agriculture, Ecosystems & Environment 210, 15–24.
| Carbon release from rice roots under paddy rice and maize–paddy rice cropping.Crossref | GoogleScholarGoogle Scholar |
Hussain Q, Liu Y, Zhang A, Pan G, Li L, Zhang X, Song X, Cui L, Jin Z (2011) Variation of bacterial and fungal community structures in the rhizosphere of hybrid and standard rice cultivars and linkage to CO2 flux. FEMS Microbiology Ecology 78, 116–128.
| Variation of bacterial and fungal community structures in the rhizosphere of hybrid and standard rice cultivars and linkage to CO2 flux.Crossref | GoogleScholarGoogle Scholar | 21569061PubMed |
Inubushi K, Brookes PC, Jenkinson DS (1991) Soil microbial biomass C, N and ninhydrin-N in aerobic and anaerobic soils measured by the fumigation-extraction method. Soil Biology & Biochemistry 23, 737–741.
| Soil microbial biomass C, N and ninhydrin-N in aerobic and anaerobic soils measured by the fumigation-extraction method.Crossref | GoogleScholarGoogle Scholar |
Jackson O, Quilliam R, Stott A, Grant H, Subke JA (2019) Rhizosphere carbon supply accelerates soil organic matter decomposition in the presence of fresh organic substrates. Plant and Soil 440, 473–490.
| Rhizosphere carbon supply accelerates soil organic matter decomposition in the presence of fresh organic substrates.Crossref | GoogleScholarGoogle Scholar |
Jha DK, Sharma GD, Mishra RR (1992) Soil microbial population numbers and enzyme activities in relation to altitude and forest degradation. Soil Biology & Biochemistry 24, 761–767.
| Soil microbial population numbers and enzyme activities in relation to altitude and forest degradation.Crossref | GoogleScholarGoogle Scholar |
Jiang M, Medlyn BE, Drake JE, Duursma RA, Anderson IC, Barton CVM, Boer MM, Carrillo Y, Castañeda-Gómez L, Collins L, Crous KY, De Kauwe MG, dos Santos BM, Emmerson KM, Facey SL, Gherlenda AN, Gimeno TE, Hasegawa S, Johnson SN, Kännaste A, Macdonald CA, Mahmud K, Moore BD, Nazaries L, Neilson EHJ, Nielsen UN, Niinemets Ü, Noh NJ, Ochoa-Hueso R, Pathare VS, Pendall E, Pihlblad J, Piñeiro J, Powell JR, Power SA, Reich PB, Renchon AA, Riegler M, Rinnan R, Rymer PD, Salomón RL, Singh BK, Smith B, Tjoelker MG, Walker JKM, Wujeska-Klause A, Yang J, Zaehle S, Ellsworth DS (2020) The fate of carbon in a mature forest under carbon dioxide enrichment. Nature 580, 227–231.
| The fate of carbon in a mature forest under carbon dioxide enrichment.Crossref | GoogleScholarGoogle Scholar | 32269351PubMed |
Kelting DL, Burger JA, Edwards GS (1998) Estimating root respiration, microbial respiration in the rhizosphere, and root-free soil respiration in forest soils. Soil Biology & Biochemistry 30, 961–968.
| Estimating root respiration, microbial respiration in the rhizosphere, and root-free soil respiration in forest soils.Crossref | GoogleScholarGoogle Scholar |
Khan MI, Hwang HY, Kim GW, Kim PJ, Das S (2018) Microbial responses to temperature sensitivity of soil respiration in a dry fallow cover cropping and submerged rice mono-cropping system. Applied Soil Ecology 128, 98–108.
| Microbial responses to temperature sensitivity of soil respiration in a dry fallow cover cropping and submerged rice mono-cropping system.Crossref | GoogleScholarGoogle Scholar |
Koçyiğit R, Rice CW (2006) Partitioning CO2 respiration among soil, rhizosphere microorganisms, and roots of wheat under greenhouse conditions. Communications in Soil Science and Plant Analysis 37, 1173–1184.
| Partitioning CO2 respiration among soil, rhizosphere microorganisms, and roots of wheat under greenhouse conditions.Crossref | GoogleScholarGoogle Scholar |
Kumar V, Naresh RK, Satendra Kumar SK, Sunil Kumar V, Singh SP, Mahajan NC (2018) Tillage, crop residue, and nitrogen levels on dynamics of soil labile organic carbon fractions, productivity and grain quality of wheat crop in Typic Ustochrept soil. Journal of Pharmacognosy and Phytochemistry 7, 598–609.
Kuzyakov Y (2006) Sources of CO2 efflux from soil and review of partitioning methods. Soil Biology & Biochemistry 38, 425–448.
| Sources of CO2 efflux from soil and review of partitioning methods.Crossref | GoogleScholarGoogle Scholar |
Kuzyakov Y, Horwath WR, Dorodnikov M, Blagodatskaya E (2019) Review and synthesis of the effects of elevated atmospheric CO2 on soil processes: No changes in pools, but increased fluxes and accelerated cycles. Soil Biology & Biochemistry 128, 66–78.
| Review and synthesis of the effects of elevated atmospheric CO2 on soil processes: No changes in pools, but increased fluxes and accelerated cycles.Crossref | GoogleScholarGoogle Scholar |
Lal R (2004) Soil carbon sequestration to mitigate climate change. Geoderma 123, 1–22.
| Soil carbon sequestration to mitigate climate change.Crossref | GoogleScholarGoogle Scholar |
Lei L, Xiao W, Zeng L, Zhu J, Huang Z, Cheng R, Gao S, Li MH (2018) Thinning but not understory removal increased heterotrophic respiration and total soil respiration in Pinus massoniana stands. The Science of the Total Environment 621, 1360–1369.
| Thinning but not understory removal increased heterotrophic respiration and total soil respiration in Pinus massoniana stands.Crossref | GoogleScholarGoogle Scholar | 29107368PubMed |
Li Y, Li Y, Chang SX, Yang Y, Fu S, Jiang P, Luo Y, Yang M, Chen Z, Hu S, Zhao M (2018) Biochar reduces soil heterotrophic respiration in a subtropical plantation through increasing soil organic carbon recalcitrancy and decreasing carbon-degrading microbial activity. Soil Biology & Biochemistry 122, 173–185.
| Biochar reduces soil heterotrophic respiration in a subtropical plantation through increasing soil organic carbon recalcitrancy and decreasing carbon-degrading microbial activity.Crossref | GoogleScholarGoogle Scholar |
Liu Y, Ge T, Zhu Z, Liu S, Luo Y, Li Y, Wang P, Gavrichkova O, Xu X, Wang J, Wu J (2019) Carbon input and allocation by rice into paddy soils: a review. Soil Biology & Biochemistry 133, 97–107.
| Carbon input and allocation by rice into paddy soils: a review.Crossref | GoogleScholarGoogle Scholar |
Malhi Y, Girardin CA, Goldsmith GR, Doughty CE, Salinas N, Metcalfe DB, Huaraca Huasco W, Silva‐Espejo JE, del Aguila‐Pasquel J, Farfán Amézquita F, Aragão LEOC, Guerrieri R, Ishida FY, Bahar NHA, Farfan‐Rios W, Phillips OL, Meir P, Silman M (2017) The variation of productivity and its allocation along a tropical elevation gradient: a whole carbon budget perspective. New Phytologist 214, 1019–1032.
| The variation of productivity and its allocation along a tropical elevation gradient: a whole carbon budget perspective.Crossref | GoogleScholarGoogle Scholar | 27768811PubMed |
Moinet GY, Cieraad E, Hunt JE, Fraser A, Turnbull MH, Whitehead D (2016) Soil heterotrophic respiration is insensitive to changes in soil water content but related to microbial access to organic matter. Geoderma 274, 68–78.
| Soil heterotrophic respiration is insensitive to changes in soil water content but related to microbial access to organic matter.Crossref | GoogleScholarGoogle Scholar |
Montagne V, Charpentier S, Cannavo P, Capiaux H, Grosbellet C, Lebeau T (2015) Structure and activity of spontaneous fungal communities in organic substrates used for soilless crops. Scientia Horticulturae 192, 148–157.
| Structure and activity of spontaneous fungal communities in organic substrates used for soilless crops.Crossref | GoogleScholarGoogle Scholar |
Nannipieri P, Kandeler E, Ruggiero P (2002) Enzyme activities and microbial and biochemical processes in soil. In ‘Enzymes in the environment: activity, ecology and applications.’ (Eds. RG Burns, RP Dick) pp. 1– 33. (Marcel Dekker: New York)
Neogi S, Bhattacharyya P, Roy KS, Panda BB, Nayak AK, Rao KS, Manna MC (2014) Soil respiration, labile carbon pools, and enzyme activities as affected by tillage practices in a tropical rice–maize–cowpea cropping system. Environmental Monitoring and Assessment 186, 4223–4236.
| Soil respiration, labile carbon pools, and enzyme activities as affected by tillage practices in a tropical rice–maize–cowpea cropping system.Crossref | GoogleScholarGoogle Scholar | 24609455PubMed |
Orwin KH, Dickie IA, Wood JR, Bonner KI, Holdaway RJ (2016) Soil microbial community structure explains the resistance of respiration to a dry–rewet cycle, but not soil functioning under static conditions. Functional Ecology 30, 1430–1439.
| Soil microbial community structure explains the resistance of respiration to a dry–rewet cycle, but not soil functioning under static conditions.Crossref | GoogleScholarGoogle Scholar |
Ouyang W, Struik PC, Yin X, Yang J (2017) Stomatal conductance, mesophyll conductance, and transpiration efficiency in relation to leaf anatomy in rice and wheat genotypes under drought. Journal of Experimental Botany 68, 5191–5205.
| Stomatal conductance, mesophyll conductance, and transpiration efficiency in relation to leaf anatomy in rice and wheat genotypes under drought.Crossref | GoogleScholarGoogle Scholar | 28992130PubMed |
Padhy SR, Nayak S, Dash PK, Das M, Roy KS, Nayak AK, Neogi S, Bhattacharyya P (2018) Elevated carbon dioxide and temperature imparted intrinsic drought tolerance in aerobic rice system through enhanced exopolysaccharide production and rhizospheric activation. Agriculture, Ecosystems & Environment 268, 52–60.
| Elevated carbon dioxide and temperature imparted intrinsic drought tolerance in aerobic rice system through enhanced exopolysaccharide production and rhizospheric activation.Crossref | GoogleScholarGoogle Scholar |
Parkin TB, Kaspar TC (2003) Temperature controls on diurnal carbon dioxide flux. Soil Science Society of America Journal 67, 1763–1772.
| Temperature controls on diurnal carbon dioxide flux.Crossref | GoogleScholarGoogle Scholar |
Pausch J, Kuzyakov Y (2018) Carbon input by roots into the soil: quantification of rhizodeposition from root to ecosystem scale. Global Change Biology 24, 1–12.
| Carbon input by roots into the soil: quantification of rhizodeposition from root to ecosystem scale.Crossref | GoogleScholarGoogle Scholar | 28752603PubMed |
Raich JW, Potter CS, Bhagawati D (2002) Interannual variability in global soil respiration, 1980–94. Global Change Biology 8, 800–812.
| Interannual variability in global soil respiration, 1980–94.Crossref | GoogleScholarGoogle Scholar |
Rand MC, Greenberg AE, Taros MJ (1975) ‘Standard methods for the examination of water and wastewater.’ 14th edn. pp. 496–498. (American Public Health Association: Washington, DC)
Savage KE, Davidson EA, Abramoff RZ, Finzi AC, Giasson MA (2018) Partitioning soil respiration: quantifying the artifacts of the trenching method. Biogeochemistry 140, 53–63.
| Partitioning soil respiration: quantifying the artifacts of the trenching method.Crossref | GoogleScholarGoogle Scholar |
Schlesinger WH, Andrews JA (2000) Soil respiration and the global carbon cycle. Biogeochemistry 48, 7–20.
| Soil respiration and the global carbon cycle.Crossref | GoogleScholarGoogle Scholar |
Song W, Tong X, Zhang J, Meng P (2016) Three-source partitioning of soil respiration by 13C natural abundance and its variation with soil depth in a plantation. Journal of Forestry Research 27, 533–540.
| Three-source partitioning of soil respiration by 13C natural abundance and its variation with soil depth in a plantation.Crossref | GoogleScholarGoogle Scholar |
Tang M, Cheng W, Zeng H, Zhu B (2019) Light intensity controls rhizosphere respiration rate and rhizosphere priming effect of soybean and sunflower. Rhizosphere 9, 97–105.
| Light intensity controls rhizosphere respiration rate and rhizosphere priming effect of soybean and sunflower.Crossref | GoogleScholarGoogle Scholar |
Vance ED, Brookes PC, Jenkinson DS (1987) An extraction method for measuring soil microbial biomass C. Soil Biology & Biochemistry 19, 703–707.
| An extraction method for measuring soil microbial biomass C.Crossref | GoogleScholarGoogle Scholar |
Vineela C, Wani SP, Srinivasarao CH, Padmaja B, Vittal KPR (2008) Microbial properties of soils as affected by cropping and nutrient management practices in several long-term manurial experiments in the semi-arid tropics of India. Applied Soil Ecology 40, 165–173.
| Microbial properties of soils as affected by cropping and nutrient management practices in several long-term manurial experiments in the semi-arid tropics of India.Crossref | GoogleScholarGoogle Scholar |
Wang P, Marsh EL, Ainsworth EA, Leakey AD, Sheflin AM, Schachtman DP (2017) Shifts in microbial communities in soil, rhizosphere and roots of two major crop systems under elevated CO2 and O3. Scientific Reports 7, 15019
| Shifts in microbial communities in soil, rhizosphere and roots of two major crop systems under elevated CO2 and O3.Crossref | GoogleScholarGoogle Scholar | 29101364PubMed |
Wang N, Yu JG, Zhao YH, Chang ZZ, Shi XX, Ma LQ, Li HB (2018) Straw enhanced CO2 and CH4 but decreased N2O emissions from flooded paddy soils: changes in microbial community compositions. Atmospheric Environment 174, 171–179.
| Straw enhanced CO2 and CH4 but decreased N2O emissions from flooded paddy soils: changes in microbial community compositions.Crossref | GoogleScholarGoogle Scholar |
Wang B, Brewer PE, Shugart HH, Lerdau MT, Allison SD (2019) Soil aggregates as biogeochemical reactors and implications for soil–atmosphere exchange of greenhouse gases—a concept. Global Change Biology 25, 373–385.
| Soil aggregates as biogeochemical reactors and implications for soil–atmosphere exchange of greenhouse gases—a concept.Crossref | GoogleScholarGoogle Scholar | 30412646PubMed |
Witt C, Gaunt JL, Galicia CC, Ottow JC, Neue HU (2000) A rapid chloroform-fumigation extraction method for measuring soil microbial biomass carbon and nitrogen in flooded rice soils. Biology and Fertility of Soils 30, 510–519.
| A rapid chloroform-fumigation extraction method for measuring soil microbial biomass carbon and nitrogen in flooded rice soils.Crossref | GoogleScholarGoogle Scholar |
Włodarczyk T, Stępniewski W, Brzezińska M (2002) Dehydrogenase activity, redox potential, and emissions of carbon dioxide and nitrous oxide from Cambisols under flooding conditions. Biology and Fertility of Soils 36, 200–206.
| Dehydrogenase activity, redox potential, and emissions of carbon dioxide and nitrous oxide from Cambisols under flooding conditions.Crossref | GoogleScholarGoogle Scholar |
Zhu Z, Ge T, Liu S, Hu Y, Ye R, Xiao M, Tong C, Kuzyakov Y, Wu J (2018) Rice rhizodeposits affect organic matter priming in paddy soil: the role of N fertilization and plant growth for enzyme activities, CO2 and CH4 emissions. Soil Biology & Biochemistry 116, 369–377.
| Rice rhizodeposits affect organic matter priming in paddy soil: the role of N fertilization and plant growth for enzyme activities, CO2 and CH4 emissions.Crossref | GoogleScholarGoogle Scholar |