Phylogeographic patterns of the Australian grass trees (Xanthorrhoea Asphodelaceae) shown using targeted amplicon sequencing
Todd G. B. McLay
A B E F , Pauline Y. Ladiges B , Stephen R. Doyle C D and Michael J. Bayly B
+ Author Affiliations
- Author Affiliations
A Royal Botanic Gardens Melbourne, Birdwood Avenue, South Yarra, Vic. 3141, Australia.
B School of Biosciences, The University of Melbourne, Vic. 3010, Australia.
C Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
D Department of Animal, Plant and Soil Sciences, La Trobe University, Bundoora, Vic. 3086, Australia.
E Centre for Australian Biodiversity Research, CSIRO, Clunies Ross Street, Canberra, ACT 2602, Australia.
F Corresponding author. Email: todd.mclay@rbg.vic.gov.au
Australian Systematic Botany 34(2) 206-225 https://doi.org/10.1071/SB20013
Submitted: 22 May 2020 Accepted: 16 January 2021 Published: 17 March 2021
Abstract
Despite the prevalence of sclerophyllous vegetation in Australia, there are few phylogeographic studies with continent-wide sampling addressing questions about the expansion of this vegetation post-aridification, and what physical barriers are associated with breaks in distribution or patterns of genetic structure. We used amplicon sequencing of plastid and nuclear DNA to investigate phylogeography of Xanthorrhoea. Despite extremely low genetic variation and widespread sharing of identical DNA sequence among multiple species and across significant geographic distance, haplotype analyses showed phylogeographic structure. Network analysis of six plastid loci and 137 samples identified 54 haplotypes (two common, 35 unique to single samples) in three geographic groups, south west and central Australia, northern–eastern Australia, and southern–eastern Australia, indicating restricted gene flow among regions. A nrDNA haplotype network of 152 samples showed less variation, with one haplotype being widespread, found in all three plastid geographic groups and 70% of species. nrDNA indicated four groups in a pattern, suggestive of at least two east–west divergences. A geographic area of a high haplotype diversity and divergence was identified in southern New South Wales, near the Southern Transition Zone. Our results showed the value of targeted amplicon sequencing and using multiple samples per species to identify both broad-scale and fine-scale biogeographic patterns.
References
Ariati SR, Murphy DJ, Udovicic F, Ladiges PY (2006) Molecular phylogeny of three groups of acacias (Acacia subgenus Phyllodineae) in arid Australia based on the internal and external transcribed spacer regions of nrDNA. Systematics and Biodiversity 4, 417–426.| Molecular phylogeny of three groups of acacias (Acacia subgenus Phyllodineae) in arid Australia based on the internal and external transcribed spacer regions of nrDNA.Crossref | GoogleScholarGoogle Scholar |
Baack E, Melo MC, Rieseberg LH, Ortiz-Barrientos D (2015) The origins of reproductive isolation in plants. New Phytologist 207, 968–984.
| The origins of reproductive isolation in plants.Crossref | GoogleScholarGoogle Scholar |
Baker WJ, Norup MV, Clarkson JJ, Couvreur TLP, Dowe JL, Lewis CE, Pintaud JC, Savolainen V, Wilmot T, Chase MW (2011) Phylogenetic relationships among arecoid palms (Arecaceae: Arecoideae). Annals of Botany 108, 1417–1432.
| Phylogenetic relationships among arecoid palms (Arecaceae: Arecoideae).Crossref | GoogleScholarGoogle Scholar | 21325340PubMed |
Barlow BA, Clifford HT, George AS, Kanis A, McCusker A (1981) Introduction. In ‘Flora of Australia. Vol. 1’ (Ed. AS George) pp. 25–75 (AGPS Press: Canberra, ACT, Australia)
Barrett RA, Bayly MJ, Duretto MF, Forster PI, Ladiges PY, Cantrill DJ (2018) Phylogenetic analysis of Zieria (Rutaceae) in Australia and New Caledonia based on nuclear ribosomal DNA shows species polyphyly, divergent paralogues and incongruence with chloroplast DNA. Australian Systematic Botany 31, 16–47.
| Phylogenetic analysis of Zieria (Rutaceae) in Australia and New Caledonia based on nuclear ribosomal DNA shows species polyphyly, divergent paralogues and incongruence with chloroplast DNA.Crossref | GoogleScholarGoogle Scholar |
Bayly MJ, Rigault P, Spokevicius A, Ladiges PY, Ades PK, Anderson C, Bossinger G, Merchant A, Udovicic F, Woodrow IE, Tibbits J (2013) Chloroplast genome analysis of Australian eucalypts: Eucalyptus, Corymbia, Angophora, Allosyncarpia and Stockwellia (Myrtaceae). Molecular Phylogenetics and Evolution 69, 704–716.
| Chloroplast genome analysis of Australian eucalypts: Eucalyptus, Corymbia, Angophora, Allosyncarpia and Stockwellia (Myrtaceae).Crossref | GoogleScholarGoogle Scholar | 23876290PubMed |
Bayly MJ, Duretto MF, Holmes GD, Forster PI, Cantrill DJ, Ladiges PY (2015) Transfer of the New Caledonian genus Boronella to Boronia (Rutaceae) based on analyses of cpDNA and nrDNA. Australian Systematic Botany 28, 111–123.
| Transfer of the New Caledonian genus Boronella to Boronia (Rutaceae) based on analyses of cpDNA and nrDNA.Crossref | GoogleScholarGoogle Scholar |
Bayly MJ, Holmes GD, Forster PI, Munzinger J, Cantrill DJ, Ladiges PY (2016) Phylogeny, classification and biogeography of Halfordia (Rutaceae) in Australia and New Caledonia. Plant Systematics and Evolution 302, 1457–1470.
| Phylogeny, classification and biogeography of Halfordia (Rutaceae) in Australia and New Caledonia.Crossref | GoogleScholarGoogle Scholar |
Beard JS (1981) The history of the phytogeographic region concept in Australia. In ‘Ecological Biogeography of Australia’. (Ed. A Keast) pp. 335–375. (Kluwer: Boston, MA, USA)
Bedford DJ (1986) Xanthorrhoea. ‘Flora of Australia. Vol. 46’. (Ed. AS George) pp. 148–169. (Australian Government Publishing Service: Canberra, ACT, Australia)
Bedford DJ (1988) Towards a natural classification: the taxonomy and evolution of Xanthorrhoea. PhD Thesis, University of Sydney, NSW, Australia.
Berger BA, Han J, Sessa EB, Gardner AG, Shepherd KA, Ricigliano VA, Jabaily RS, Howarth DG (2017) The unexpected depths of genome-skimming data: a case study examining Goodeniaceae floral symmetry genes. Applications in Plant Sciences 5, 1700042.
| The unexpected depths of genome-skimming data: a case study examining Goodeniaceae floral symmetry genes.Crossref | GoogleScholarGoogle Scholar | 29109919PubMed |
Brown GK, Udovicic F, Ladiges PY (2001) Molecular phylogeny and biogeography of Melaleuca, Callistemon and related genera (Myrtaceae). Australian Systematic Botany 14, 565–585.
| Molecular phylogeny and biogeography of Melaleuca, Callistemon and related genera (Myrtaceae).Crossref | GoogleScholarGoogle Scholar |
Bryant LM, Krosch MN (2016) Lines in the land: a review of evidence for eastern Australia’s major biogeographical barriers to closed forest taxa. Biological Journal of the Linnean Society. Linnean Society of London
| Lines in the land: a review of evidence for eastern Australia’s major biogeographical barriers to closed forest taxa.Crossref | GoogleScholarGoogle Scholar |
Burbidge N (1960) The phytogeography of the Australian region. Australian Journal of Botany 8, 75–211.
| The phytogeography of the Australian region.Crossref | GoogleScholarGoogle Scholar |
Burke JM, Ladiges PY, Batty EL, Adams PB, Bayly MJ (2013) Divergent lineages in two species of Dendrobium orchids (D. speciosum and D. tetragonum) correspond to major geographical breaks in eastern Australia. Journal of Biogeography 40, 2071–2081.
| Divergent lineages in two species of Dendrobium orchids (D. speciosum and D. tetragonum) correspond to major geographical breaks in eastern Australia.Crossref | GoogleScholarGoogle Scholar |
Bybee SM, Bracken-Grissom H, Haynes BD, Hermansen RA, Byers RL, Clement MJ, Udall JA, Wilcox ER, Crandall KA (2011) Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics. Genome Biology and Evolution 3, 1312–1323.
| Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics.Crossref | GoogleScholarGoogle Scholar | 22002916PubMed |
Byrne M (2007) Phylogeography provides an evolutionary context for the conservation of a diverse and ancient flora. Australian Journal of Botany 55, 316–325.
| Phylogeography provides an evolutionary context for the conservation of a diverse and ancient flora.Crossref | GoogleScholarGoogle Scholar |
Byrne M (2008) Evidence for multiple refugia at different time scales during Pleistocene climatic oscillations in southern Australia inferred from phylogeography. Quaternary Science Reviews 27, 2576–2585.
| Evidence for multiple refugia at different time scales during Pleistocene climatic oscillations in southern Australia inferred from phylogeography.Crossref | GoogleScholarGoogle Scholar |
Byrne M, Hines B (2004) Phylogeographical analysis of cpDNA variation in Eucalyptus loxophleba (Myrtaceae). Australian Journal of Botany 52, 459–470.
| Phylogeographical analysis of cpDNA variation in Eucalyptus loxophleba (Myrtaceae).Crossref | GoogleScholarGoogle Scholar |
Byrne M, Hopper SD (2008) Granite outcrops as ancient islands in old landscapes: evidence from the phylogeography and population genetics of Eucalyptus caesia (Myrtaceae) in Western Australia. Biological Journal of the Linnean Society. Linnean Society of London 93, 177–188.
| Granite outcrops as ancient islands in old landscapes: evidence from the phylogeography and population genetics of Eucalyptus caesia (Myrtaceae) in Western Australia.Crossref | GoogleScholarGoogle Scholar |
Byrne M, Macdonald B, Brand J (2003) Phylogeography and divergence in the chloroplast genome of Western Australian sandalwood (Santalum spicatum). Heredity 91, 389–395.
| Phylogeography and divergence in the chloroplast genome of Western Australian sandalwood (Santalum spicatum).Crossref | GoogleScholarGoogle Scholar | 14512954PubMed |
Byrne M, Steane DA, Joseph L, Yeates DK, Jordan GJ, Crayn D, Aplin K, Cantrill DJ, Cook LG, Crisp MD, Keogh JS, Melville J, Moritz C, Porch N, Sniderman JMK, Sunnucks P, Weston PH (2011) Decline of a biome: evolution, contraction, fragmentation, extinction and invasion of the Australian mesic zone biota. Journal of Biogeography 38, 1635–1656.
| Decline of a biome: evolution, contraction, fragmentation, extinction and invasion of the Australian mesic zone biota.Crossref | GoogleScholarGoogle Scholar |
Cardillo M, Pratt R (2013) Evolution of a hotspot genus: geographic variation in speciation and extinction rates in Banksia (Proteaceae). BMC Evolutionary Biology 13, 155
| Evolution of a hotspot genus: geographic variation in speciation and extinction rates in Banksia (Proteaceae).Crossref | GoogleScholarGoogle Scholar | 23957450PubMed |
Chapple DG, Chapple SNJ, Thompson MB (2011) Biogeographic barriers in south-eastern Australia drive phylogeographic divergence in the garden skink, Lampropholis guichenoti. Journal of Biogeography 38, 1761–1775.
| Biogeographic barriers in south-eastern Australia drive phylogeographic divergence in the garden skink, Lampropholis guichenoti.Crossref | GoogleScholarGoogle Scholar |
Crayn DM, Rossetto M, Maynard DJ (2006) Molecular phylogeny and dating reveals an Oligo–Miocene radiation of dry-adapted shrubs (former Tremandraceae) from rainforest tree progenitors (Elaeocarpaceae) in Australia. American Journal of Botany 93, 1328–1342.
| Molecular phylogeny and dating reveals an Oligo–Miocene radiation of dry-adapted shrubs (former Tremandraceae) from rainforest tree progenitors (Elaeocarpaceae) in Australia.Crossref | GoogleScholarGoogle Scholar | 21642198PubMed |
Crisp MD, Cook LG (2007) A congruent molecular signature of vicariance across multiple plant lineages. Molecular Phylogenetics and Evolution 43, 1106–1117.
| A congruent molecular signature of vicariance across multiple plant lineages.Crossref | GoogleScholarGoogle Scholar | 17434758PubMed |
Crisp MD, Cook LG (2013) How was the Australian flora assembled over the last 65 million years? A molecular phylogenetic perspective. Annual Review of Ecology, Evolution, and Systematics 44, 303–324.
| How was the Australian flora assembled over the last 65 million years? A molecular phylogenetic perspective.Crossref | GoogleScholarGoogle Scholar |
Crisp MD, Laffan S, Linder HP, Monro A (2001) Endemism in the Australian flora. Journal of Biogeography 28, 183–198.
| Endemism in the Australian flora.Crossref | GoogleScholarGoogle Scholar |
Crisp M, Cook L, Steane D (2004) Radiation of the Australian flora: what can comparisons of molecular phylogenies across multiple taxa tell us about the evolution of diversity in present-day communities? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 359, 1551–1571.
| Radiation of the Australian flora: what can comparisons of molecular phylogenies across multiple taxa tell us about the evolution of diversity in present-day communities?Crossref | GoogleScholarGoogle Scholar | 15519972PubMed |
Crisp MD, Hardy NB, Cook LG (2014) Clock model makes a large difference to age estimates of long-stemmed clades with no internal calibration: a test using Australian grasstrees. BMC Evolutionary Biology 14, 263
| Clock model makes a large difference to age estimates of long-stemmed clades with no internal calibration: a test using Australian grasstrees.Crossref | GoogleScholarGoogle Scholar | 25523814PubMed |
Currat M, Ruedi M, Petit RJ, Excoffier L (2008) The hidden side of invasions: massive introgression by local genes. Evolution 62, 1908–1920.
| The hidden side of invasions: massive introgression by local genes.Crossref | GoogleScholarGoogle Scholar | 18452573PubMed |
D’Costa DM, Grinrod J, Ogden R (1993) Preliminary environmental reconstructions from late Quaternary pollen and mollusc assemblages at Egg Lagoon, King Island, Bass Strait. Australian Journal of Ecology 18, 351–366.
| Preliminary environmental reconstructions from late Quaternary pollen and mollusc assemblages at Egg Lagoon, King Island, Bass Strait.Crossref | GoogleScholarGoogle Scholar |
De Barba M, Miquel C, Lobréaux S, Quenette PY, Swenson JE, Taberlet P (2017) High-throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low-quantity and degraded DNA. Molecular Ecology Resources 17, 492–507.
| High-throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low-quantity and degraded DNA.Crossref | GoogleScholarGoogle Scholar | 27505280PubMed |
Degnan JH, Rosenberg NA (2009) Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends in Ecology & Evolution 24, 332–340.
| Gene tree discordance, phylogenetic inference and the multispecies coalescent.Crossref | GoogleScholarGoogle Scholar |
Di Virgilio G, Laffan SW, Ebach MC (2012) Fine‐scale quantification of floral and faunal breaks and their geographic correlates, with an example from south‐eastern Australia. Journal of Biogeography 39, 1862–1876.
| Fine‐scale quantification of floral and faunal breaks and their geographic correlates, with an example from south‐eastern Australia.Crossref | GoogleScholarGoogle Scholar |
Donders TH, Wagner F, Visscher H (2006) Late Pleistocene and Holocene subtropical vegetation dynamics recorded in perched lake deposits on Fraser Island, Queensland, Australia. Palaeogeography, Palaeoclimatology, Palaeoecology 241, 417–439.
| Late Pleistocene and Holocene subtropical vegetation dynamics recorded in perched lake deposits on Fraser Island, Queensland, Australia.Crossref | GoogleScholarGoogle Scholar |
Dupuis JR, Pillon Y, Sakishima T, Gemmill CEC, Chamala S, Barbazuk WB, Geib SM, Stacy EA (2019) Targeted amplicon sequencing of 40 nuclear genes supports a single introduction and rapid radiation of Hawaiian Metrosideros (Myrtaceae). Plant Systematics and Evolution 305, 961–974.
| Targeted amplicon sequencing of 40 nuclear genes supports a single introduction and rapid radiation of Hawaiian Metrosideros (Myrtaceae).Crossref | GoogleScholarGoogle Scholar |
Duretto MF, Heslewood MA, Bayly MJ (2020) Boronia (Rutaceae) is polyphyletic: reinstating Cyanothamnus and the problems associated with inappropriately defined outgroups. Taxon 69, 481–499.
| Boronia (Rutaceae) is polyphyletic: reinstating Cyanothamnus and the problems associated with inappropriately defined outgroups.Crossref | GoogleScholarGoogle Scholar |
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32, 1792–1797.
| MUSCLE: multiple sequence alignment with high accuracy and high throughput.Crossref | GoogleScholarGoogle Scholar | 15034147PubMed |
Emerson BC, Hewitt GM (2005) Phylogeography. Current Biology 15, R367–R371.
| Phylogeography.Crossref | GoogleScholarGoogle Scholar | 15916934PubMed |
Fior S, Li M, Oxelman B, Viola R, Hodges SA, Ometto L, Varotto C (2013) Spatiotemporal reconstruction of the Aquilegia rapid radiation through next-generation sequencing of rapidly evolving cpDNA regions. New Phytologist 198, 579–592.
| Spatiotemporal reconstruction of the Aquilegia rapid radiation through next-generation sequencing of rapidly evolving cpDNA regions.Crossref | GoogleScholarGoogle Scholar |
Ford KA, Ward JM, Smissen RD, Wagstaff SJ, Breitwieser I (2007) Origin and biogeography of New Zealand Craspedia (Compositae : Gnaphalieae) based on ITS, ETS, and psbA–trnH sequence data. New Zealand Journal of Botany 45, 296
Foster CSP, Ho SYW, Conn BJ, Henwood MJ (2014) Molecular systematics and biogeography of Logania R.Br. (Loganiaceae). Molecular Phylogenetics and Evolution 78, 324–333.
| Molecular systematics and biogeography of Logania R.Br. (Loganiaceae).Crossref | GoogleScholarGoogle Scholar |
Frankham GJ, Handasyde KA, Eldridge MDB (2016) Evolutionary and contemporary responses to habitat fragmentation detected in a mesic zone marsupial, the long-nosed potoroo (Potorous tridactylus) in south-eastern Australia. Journal of Biogeography 43, 653–665.
| Evolutionary and contemporary responses to habitat fragmentation detected in a mesic zone marsupial, the long-nosed potoroo (Potorous tridactylus) in south-eastern Australia.Crossref | GoogleScholarGoogle Scholar |
Freeman JS, Jackson HD, Steane DA, McKinnon GE, Dutkowski GW, Potts BM, Vaillancourt RE (2001) Chloroplast DNA phylogeography of Eucalyptus globulus. Australian Journal of Botany 49, 585–596.
| Chloroplast DNA phylogeography of Eucalyptus globulus.Crossref | GoogleScholarGoogle Scholar |
French PA, Brown GK, Bayly MJ (2016) Incongruent patterns of nuclear and chloroplast variation in Correa (Rutaceae): introgression and biogeography in south-eastern Australia. Plant Systematics and Evolution 302, 447–468.
| Incongruent patterns of nuclear and chloroplast variation in Correa (Rutaceae): introgression and biogeography in south-eastern Australia.Crossref | GoogleScholarGoogle Scholar |
Fu Y-X (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147, 915–925.
| Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection.Crossref | GoogleScholarGoogle Scholar | 9335623PubMed |
Garrick RC, Bonatelli IAS, Hyseni C, Morales A, Pelletier TA, Perez MF, Rice E, Satler JD, Symula RE, Thomé MTC, Carstens BC (2015) The evolution of phylogeographic data sets. Molecular Ecology 24, 1164–1171.
| The evolution of phylogeographic data sets.Crossref | GoogleScholarGoogle Scholar | 25678037PubMed |
Gill AM, Ingwersen F (1976) Growth of Xanthorrhoea australis R.Br. in Relation to Fire. Journal of Applied Ecology 13, 195
| Growth of Xanthorrhoea australis R.Br. in Relation to Fire.Crossref | GoogleScholarGoogle Scholar |
Greenwood DR, Christophel DC, Bermingham E, Dick CW, Moritz C (2005) The origins and tertiary history of Australian ‘tropical’ rainforests. In ‘Tropical Rainforests: Past, Present and Future’. pp. 336–373. (University of Chicago Press: Chicago, IL, USA)
Griffin PC, Robin C, Hoffmann AA (2011) A next-generation sequencing method for overcoming the multiple gene copy problem in polyploid phylogenetics, applied to Poa grasses. BMC Biology 9, 19
| A next-generation sequencing method for overcoming the multiple gene copy problem in polyploid phylogenetics, applied to Poa grasses.Crossref | GoogleScholarGoogle Scholar | 21429199PubMed |
Herbert D (1967) Ecological segregation and Australian phytogeographic elements. Proceedings of the Royal Society of Queensland 78, 101–111.
Hewitt GM (2004) The structure of biodiversity: insights from molecular phylogeography. Frontiers in Zoology 1, 4
| The structure of biodiversity: insights from molecular phylogeography.Crossref | GoogleScholarGoogle Scholar | 15679920PubMed |
Hill RS, Truswell E, McLoughlin S, Dettman M (1999) The evolution of the Australian flora: fossil evidence. ‘Flora of Australia. Vol. 1’, 2nd edn. (Ed. A Orchard) pp. 251–320. (ABRS/CSIRO: Canberra, ACT, Australia)
Holmes GD, Weston PH, Murphy DJ, Connelly C, Cantrill DJ (2018) The genealogy of geebungs: phylogenetic analysis of Persoonia (Proteaceae) and related genera in subfamily Persoonioideae. Australian Systematic Botany 31, 166–189.
| The genealogy of geebungs: phylogenetic analysis of Persoonia (Proteaceae) and related genera in subfamily Persoonioideae.Crossref | GoogleScholarGoogle Scholar |
Hope GS (1978) The late Pleistocene and Holocene vegetational history of hunter island, north-western Tasmania. Australian Journal of Botany 26, 493–514.
| The late Pleistocene and Holocene vegetational history of hunter island, north-western Tasmania.Crossref | GoogleScholarGoogle Scholar |
Hope G, Kershaw AP, van der Kaars S, Xiangjun S, Liew PM, Heusser LE, Takahara H, McGlone M, Miyoshi N, Moss PT (2004) History of vegetation and habitat change in the Austral–Asian region. Quaternary International 118–119, 103–126.
| History of vegetation and habitat change in the Austral–Asian region.Crossref | GoogleScholarGoogle Scholar |
Hopper SD (2009) OCBIL theory: towards an integrated understanding of the evolution, ecology and conservation of biodiversity on old, climatically buffered, infertile landscapes. Plant and Soil 322, 49–86.
| OCBIL theory: towards an integrated understanding of the evolution, ecology and conservation of biodiversity on old, climatically buffered, infertile landscapes.Crossref | GoogleScholarGoogle Scholar |
Hopper SD, Gioia P (2004) The Southwest Australian Floristic Region: evolution and conservation of a global hot spot of biodiversity. Annual Review of Ecology, Evolution, and Systematics 35, 623–650.
| The Southwest Australian Floristic Region: evolution and conservation of a global hot spot of biodiversity.Crossref | GoogleScholarGoogle Scholar |
Hopper S, Harvey MS, Chappill JA, Main AR, Main BY (1999) The western Australian biota as Gondwanan heritage: a review. In ‘Gondwanan Heritage: Past, Present and Future of the Western Australian Biota’. (Eds SD Hopper, JA Chappill, MS Harvey, AS George) pp. 1–46. (Surrey Beatty: Sydney, NSW, Australia)
Howarth DG, Baum DA (2005) Genealogical evidence of homoploid hybrid speciation in an adaptive radiation of Scaevola (Goodeniaceae) in the Hawaiian islands. Evolution 59, 948–961.
| Genealogical evidence of homoploid hybrid speciation in an adaptive radiation of Scaevola (Goodeniaceae) in the Hawaiian islands.Crossref | GoogleScholarGoogle Scholar | 16136795PubMed |
Huson D, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23, 254–267.
| Application of phylogenetic networks in evolutionary studies.Crossref | GoogleScholarGoogle Scholar | 16221896PubMed |
Jabaily RS, Shepherd KA, Gardner AG, Gustafsson MHG, Howarth DG, Motley TJ (2014) Historical biogeography of the predominantly Australian plant family Goodeniaceae. Journal of Biogeography 41, 2057–2067.
| Historical biogeography of the predominantly Australian plant family Goodeniaceae.Crossref | GoogleScholarGoogle Scholar |
Jeanson ML, Labat J-N, Little DP (2011) DNA barcoding: a new tool for palm taxonomists? Annals of Botany 108, 1445–1451.
| DNA barcoding: a new tool for palm taxonomists?Crossref | GoogleScholarGoogle Scholar | 21757475PubMed |
Joly S, Stevens MI, van Vuuren BJ (2007) Haplotype networks can be misleading in the presence of missing data. Systematic Biology 56, 857–862.
| Haplotype networks can be misleading in the presence of missing data.Crossref | GoogleScholarGoogle Scholar | 17957580PubMed |
Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30, 772–780.
| MAFFT multiple sequence alignment software version 7: improvements in performance and usability.Crossref | GoogleScholarGoogle Scholar | 23329690PubMed |
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28, 1647–1649.
| Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.Crossref | GoogleScholarGoogle Scholar | 22543367PubMed |
Kooyman R, Rossetto M, Allen C, Cornwell W (2012) Australian tropical and subtropical rain forest community assembly: phylogeny, functional biogeography, and environmental gradients. Biotropica 44, 668–679.
| Australian tropical and subtropical rain forest community assembly: phylogeny, functional biogeography, and environmental gradients.Crossref | GoogleScholarGoogle Scholar |
Ladiges PY, Kellermann J, Nelson G, Humphries CJ, Udovicic F (2005) Historical biogeography of Australian Rhamnaceae, tribe Pomaderreae. Journal of Biogeography 32, 1909–1919.
| Historical biogeography of Australian Rhamnaceae, tribe Pomaderreae.Crossref | GoogleScholarGoogle Scholar |
Ladiges P, Parra-O C, Gibbs A, Udovicic F, Nelson G, Bayly M (2011) Historical biogeographical patterns in continental Australia: congruence among areas of endemism of two major clades of eucalypts. Cladistics 27, 29–41.
| Historical biogeographical patterns in continental Australia: congruence among areas of endemism of two major clades of eucalypts.Crossref | GoogleScholarGoogle Scholar |
Ladiges PY, Bayly MJ, Nelson G (2012) Searching for ancestral areas and artifactual centers of origin in biogeography: with comment on east-west patterns across Southern Australia. Systematic Biology 61, 703–708.
| Searching for ancestral areas and artifactual centers of origin in biogeography: with comment on east-west patterns across Southern Australia.Crossref | GoogleScholarGoogle Scholar | 22234419PubMed |
Lamont BB, Wittkuhn R, Korczynskyj D (2004) Ecology and ecophysiology of grasstrees. Australian Journal of Botany 52, 561–582.
| Ecology and ecophysiology of grasstrees.Crossref | GoogleScholarGoogle Scholar |
Lamont BB, He T, Lim SL (2016) Hakea, the world’s most sclerophyllous genus, arose in southwestern Australian heathland and diversified throughout Australia over the past 12 million years. Australian Journal of Botany 64, 77–88.
| Hakea, the world’s most sclerophyllous genus, arose in southwestern Australian heathland and diversified throughout Australia over the past 12 million years.Crossref | GoogleScholarGoogle Scholar |
Lanfear R, Kokko H, Eyre-Walker A (2014) Population size and the rate of evolution. Trends in Ecology & Evolution 29, 33–41.
| Population size and the rate of evolution.Crossref | GoogleScholarGoogle Scholar |
Larcombe MJ, McKinnon GE, Vaillancourt RE (2011) Genetic evidence for the origins of range disjunctions in the Australian dry sclerophyll plant Hardenbergia violacea. Journal of Biogeography 38, 125–136.
| Genetic evidence for the origins of range disjunctions in the Australian dry sclerophyll plant Hardenbergia violacea.Crossref | GoogleScholarGoogle Scholar |
Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25, 1451–1452.
| DnaSP v5: a software for comprehensive analysis of DNA polymorphism data.Crossref | GoogleScholarGoogle Scholar | 19346325PubMed |
Loo AHB, Dransfield J, Chase MW, Baker WJ (2006) Low-copy nuclear DNA, phylogeny and the evolution of dichogamy in the betel nut palms and their relatives (Arecinae; Arecaceae). Molecular Phylogenetics and Evolution 39, 598–618.
| Low-copy nuclear DNA, phylogeny and the evolution of dichogamy in the betel nut palms and their relatives (Arecinae; Arecaceae).Crossref | GoogleScholarGoogle Scholar |
Maddison WP, Knowles LL (2006) Inferring phylogeny despite incomplete lineage sorting. Systematic Biology 55, 21–30.
| Inferring phylogeny despite incomplete lineage sorting.Crossref | GoogleScholarGoogle Scholar | 16507521PubMed |
Magoc T, Salzberg S (2011) FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27, 2957–2963.
| FLASH: fast length adjustment of short reads to improve genome assemblies.Crossref | GoogleScholarGoogle Scholar | 21903629PubMed |
Martin HA (1998) Tertiary climatic evolution and the development of aridity in Australia. Proceedings of the Linnean Society of New South Wales 119, 115–136.
Martin HA (2006) Cenozoic climatic change and the development of the arid vegetation in Australia. Journal of Arid Environments 66, 533–563.
| Cenozoic climatic change and the development of the arid vegetation in Australia.Crossref | GoogleScholarGoogle Scholar |
Mast AR, Givnish TJ (2002) Historical biogeography and the origin of stomatal distributions in Banksia and Dryandra (Proteaceae) based on their cpDNA phylogeny. American Journal of Botany 89, 1311–1323.
| Historical biogeography and the origin of stomatal distributions in Banksia and Dryandra (Proteaceae) based on their cpDNA phylogeny.Crossref | GoogleScholarGoogle Scholar | 21665734PubMed |
McLay TGB, Bayly MJ, Ladiges PY (2016) Is south-western Western Australia a centre of origin for eastern Australian taxa or is the centre an artefact of a method of analysis? A comment on Hakea and its supposed divergence over the past 12 million years. Australian Systematic Botany 29, 87–94.
| Is south-western Western Australia a centre of origin for eastern Australian taxa or is the centre an artefact of a method of analysis? A comment on Hakea and its supposed divergence over the past 12 million years.Crossref | GoogleScholarGoogle Scholar |
McLay T, Holmes GD, Forster PI, Hoebee SE, Fernando DR (2018) Phylogeny, biogeography and foliar manganese accumulation of Gossia (Myrtaceae). Australian Systematic Botany 31, 374–388.
| Phylogeny, biogeography and foliar manganese accumulation of Gossia (Myrtaceae).Crossref | GoogleScholarGoogle Scholar |
McPherson H, van der Merwe M, Delaney SK, Edwards MA, Henry RJ, McIntosh E, Rymer PD, Milner ML, Siow J, Rossetto M (2013) Capturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree. BMC Ecology 13, 8
| Capturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree.Crossref | GoogleScholarGoogle Scholar | 23497206PubMed |
Mellick R, Lowe A, Rossetto M (2011) Consequences of long- and short-term fragmentation on the genetic diversity and differentiation of a late successional rainforest conifer. Australian Journal of Botany 59, 351–362.
| Consequences of long- and short-term fragmentation on the genetic diversity and differentiation of a late successional rainforest conifer.Crossref | GoogleScholarGoogle Scholar |
Milner ML, Rossetto M, Crisp MD, Weston PH (2012) The impact of multiple biogeographic barriers and hybridization on species-level differentiation. American Journal of Botany 99, 2045–2057.
| The impact of multiple biogeographic barriers and hybridization on species-level differentiation.Crossref | GoogleScholarGoogle Scholar | 23221499PubMed |
Mirarab S, Bayzid MS, Warnow T (2016) Evaluating summary methods for multilocus species tree estimation in the presence of incomplete lineage sorting. Systematic Biology 65, 366–380.
| Evaluating summary methods for multilocus species tree estimation in the presence of incomplete lineage sorting.Crossref | GoogleScholarGoogle Scholar | 25164915PubMed |
Mole BJ, Udovicic F, Ladiges PY, Duretto MF (2004) Molecular phylogeny of Phebalium (Rutaceae: Boronieae) and related genera based on the nrDNA regions ITS 1+2. Plant Systematics and Evolution 249, 197–212.
| Molecular phylogeny of Phebalium (Rutaceae: Boronieae) and related genera based on the nrDNA regions ITS 1+2.Crossref | GoogleScholarGoogle Scholar |
Morales HE, Sunnucks P, Joseph L, Pavlova A (2017) Perpendicular axes of differentiation generated by mitochondrial introgression. Molecular Ecology 26, 3241–3255.
| Perpendicular axes of differentiation generated by mitochondrial introgression.Crossref | GoogleScholarGoogle Scholar | 28329425PubMed |
Moriguchi N, Uchiyama K, Miyagi R, Moritsuka E, Takahashi A, Tamura K, Tsumura Y, Teshima KM, Tachida H, Kusumi J (2019) Inferring the demographic history of Japanese cedar, Cryptomeria japonica, using amplicon sequencing. Heredity 123, 371–383.
| Inferring the demographic history of Japanese cedar, Cryptomeria japonica, using amplicon sequencing.Crossref | GoogleScholarGoogle Scholar | 30809077PubMed |
Moussalli A, Hugall AF, Moritz C (2005) A mitochondrial phylogeny of the rainforest skink genus Saproscincus, Wells and Wellington (1984). Molecular Phylogenetics and Evolution 34, 190–202.
| A mitochondrial phylogeny of the rainforest skink genus Saproscincus, Wells and Wellington (1984).Crossref | GoogleScholarGoogle Scholar | 15579392PubMed |
Murphy DJ, Ebach MC, Miller JT, Laffan SW, Cassis G, Ung V, Thornhill AH, Kerr N, Tursky ML (2019) Do phytogeographic patterns reveal biomes or biotic regions? Cladistics 35, 654–670.
| Do phytogeographic patterns reveal biomes or biotic regions?Crossref | GoogleScholarGoogle Scholar |
Neal WC, James EA, Bayly MJ (2019) Phylogeography, classification and conservation of pink zieria (Zieria veronicea; Rutaceae): influence of changes in climate, geology and sea level in south-eastern Australia. Plant Systematics and Evolution 305, 503–520.
| Phylogeography, classification and conservation of pink zieria (Zieria veronicea; Rutaceae): influence of changes in climate, geology and sea level in south-eastern Australia.Crossref | GoogleScholarGoogle Scholar |
Nevill PG, Bossinger G, Ades PK (2010) Phylogeography of the world’s tallest angiosperm, Eucalyptus regnans: evidence for multiple isolated Quaternary refugia. Journal of Biogeography 37, 179–192.
| Phylogeography of the world’s tallest angiosperm, Eucalyptus regnans: evidence for multiple isolated Quaternary refugia.Crossref | GoogleScholarGoogle Scholar |
Nge FJ, Biffin E, Thiele KR, Waycott M (2020) Extinction pulse at Eocene–Oligocene boundary drives diversification dynamics of two Australian temperate floras. Proceedings of the Royal Society of London – B. Biological Sciences 287, 20192546.
| Extinction pulse at Eocene–Oligocene boundary drives diversification dynamics of two Australian temperate floras.Crossref | GoogleScholarGoogle Scholar |
Nicholls JA, Austin JJ (2005) Phylogeography of an east Australian wet-forest bird, the satin bowerbird (Ptilonorhynchus violaceus), derived from mtDNA, and its relationship to morphology. Molecular Ecology 14, 1485–1496.
| Phylogeography of an east Australian wet-forest bird, the satin bowerbird (Ptilonorhynchus violaceus), derived from mtDNA, and its relationship to morphology.Crossref | GoogleScholarGoogle Scholar | 15813786PubMed |
Nistelberger H, Gibson N, Macdonald B, Tapper S-L, Byrne M (2014) Phylogeographic evidence for two mesic refugia in a biodiversity hotspot. Heredity 113, 454–463.
| Phylogeographic evidence for two mesic refugia in a biodiversity hotspot.Crossref | GoogleScholarGoogle Scholar | 24984607PubMed |
O’Neill EM, Schwartz R, Bullock CT, Williams JS, Shaffer HB, Aguilar-Miguel X, Parra-Olea G, Weisrock DW (2013) Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex. Molecular Ecology 22, 111–129.
| Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex.Crossref | GoogleScholarGoogle Scholar | 23062080PubMed |
Parra-O C, Bayly MJ, Drinnan A, Udovicic F, Ladiges P (2009) Phylogeny, major clades and infrageneric classification of Corymbia (Myrtaceae), based on nuclear ribosomal DNA and morphology. Australian Systematic Botany 22, 384–399.
| Phylogeny, major clades and infrageneric classification of Corymbia (Myrtaceae), based on nuclear ribosomal DNA and morphology.Crossref | GoogleScholarGoogle Scholar |
Playford J, Bell J, Moran G (1993) A major disjunction in genetic diversity over the geographic range of Acacia melanoxylon R.Br. Australian Journal of Botany 41, 355–368.
| A major disjunction in genetic diversity over the geographic range of Acacia melanoxylon R.Br.Crossref | GoogleScholarGoogle Scholar |
Pons O, Petit RJ (1996) Measwring and testing genetic differentiation with ordered versus unordered alleles. Genetics 144, 1237–1245.
| Measwring and testing genetic differentiation with ordered versus unordered alleles.Crossref | GoogleScholarGoogle Scholar | 8913764PubMed |
Puritz JB, Addison JA, Toonen RJ (2012) Next-generation phylogeography: a targeted approach for multilocus sequencing of non-model organisms. PLoS One 7, e34241.
| Next-generation phylogeography: a targeted approach for multilocus sequencing of non-model organisms.Crossref | GoogleScholarGoogle Scholar | 22470543PubMed |
Ramírez-Soriano A, Ramos-Onsins SE, Rozas J, Calafell F, Navarro A (2008) Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination. Genetics 179, 555–567.
| Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination.Crossref | GoogleScholarGoogle Scholar | 18493071PubMed |
Ramos-Onsins SE, Rozas J (2002) Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution 19, 2092–2100.
| Statistical properties of new neutrality tests against population growth.Crossref | GoogleScholarGoogle Scholar | 12446801PubMed |
Rix MG, Harvey MS (2012) Phylogeny and historical biogeography of ancient assassin spiders (Araneae: Archaeidae) in the Australian mesic zone: evidence for Miocene speciation within Tertiary refugia. Molecular Phylogenetics and Evolution 62, 375–396.
| Phylogeny and historical biogeography of ancient assassin spiders (Araneae: Archaeidae) in the Australian mesic zone: evidence for Miocene speciation within Tertiary refugia.Crossref | GoogleScholarGoogle Scholar | 22040763PubMed |
Rohland N, Reich D (2012) Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture. Genome Research 22, 939–946.
| Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture.Crossref | GoogleScholarGoogle Scholar | 22267522PubMed |
Rossetto M, Allen CB, Thurlby KAG, Weston PH, Milner ML (2012) Genetic structure and bio-climatic modeling support allopatric over parapatric speciation along a latitudinal gradient. BMC Evolutionary Biology 12, 149
| Genetic structure and bio-climatic modeling support allopatric over parapatric speciation along a latitudinal gradient.Crossref | GoogleScholarGoogle Scholar | 22906180PubMed |
Salzburger W, Ewing G, Von Haeseler A (2011) The performance of phylogenetic algorithms in estimating haplotype genealogies with migration. Molecular Ecology 20, 1952–1963.
| The performance of phylogenetic algorithms in estimating haplotype genealogies with migration.Crossref | GoogleScholarGoogle Scholar | 21457168PubMed |
Schodde R (1989) Origins, radiations and sifting in the Australian biota: changing concepts from new data and old. Australian Systematic Botany Society Newsletter 60, 2–11.
Seehausen O (2004) Hybridization and adaptive radiation. Trends in Ecology & Evolution 19, 198–207.
| Hybridization and adaptive radiation.Crossref | GoogleScholarGoogle Scholar |
Shepherd LD, McLay TGB (2011) Two micro-scale protocols for the isolation of DNA from polysaccharide-rich plant tissue. Journal of Plant Research 124, 311–314.
| Two micro-scale protocols for the isolation of DNA from polysaccharide-rich plant tissue.Crossref | GoogleScholarGoogle Scholar | 20927638PubMed |
Simmons MP, Ochoterena H (2000) Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49, 369–381.
| Gaps as characters in sequence-based phylogenetic analyses.Crossref | GoogleScholarGoogle Scholar | 12118412PubMed |
Simpson L, Clements MA, Crayn DM, Nargar K (2018) Evolution in Australia’s mesic biome under past and future climates: insights from a phylogenetic study of the Australian rock orchids (Dendrobium speciosum complex, Orchidaceae). Molecular Phylogenetics and Evolution 118, 32–46.
| Evolution in Australia’s mesic biome under past and future climates: insights from a phylogenetic study of the Australian rock orchids (Dendrobium speciosum complex, Orchidaceae).Crossref | GoogleScholarGoogle Scholar | 28888790PubMed |
Soltis PS, Soltis DE (2009) The role of hybridization in plant speciation. Annual Review of Plant Biology 60, 561–588.
| The role of hybridization in plant speciation.Crossref | GoogleScholarGoogle Scholar | 19575590PubMed |
Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312–1313.
| RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.Crossref | GoogleScholarGoogle Scholar | 24451623PubMed |
Steane DA, Nicolle D, McKinnon GE, Vaillancourt RE, Potts BM, Steane DA, Nicolle D, McKinnon GE, Vaillancourt RE, Potts BM (2002) Higher-level relationships among the eucalypts are resolved by ITS-sequence data. Australian Systematic Botany 15, 49–62.
| Higher-level relationships among the eucalypts are resolved by ITS-sequence data.Crossref | GoogleScholarGoogle Scholar |
Steele PR, Hertweck KL, Mayfield D, McKain MR, Leebens-Mack J, Pires JC (2012) Quality and quantity of data recovered from massively parallel sequencing: examples in Asparagales and Poaceae. American Journal of Botany 99, 330–348.
| Quality and quantity of data recovered from massively parallel sequencing: examples in Asparagales and Poaceae.Crossref | GoogleScholarGoogle Scholar | 22291168PubMed |
Symula R, Keogh JS, Cannatella DC (2008) Ancient phylogeographic divergence in southeastern Australia among populations of the widespread common froglet, Crinia signifera. Molecular Phylogenetics and Evolution 47, 569–580.
| Ancient phylogeographic divergence in southeastern Australia among populations of the widespread common froglet, Crinia signifera.Crossref | GoogleScholarGoogle Scholar | 18348908PubMed |
Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF (1998) Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology 7, 453–464.
| Comparative phylogeography and postglacial colonization routes in Europe.Crossref | GoogleScholarGoogle Scholar | 9628000PubMed |
Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585–595.
| Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.Crossref | GoogleScholarGoogle Scholar | 2513255PubMed |
Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132, 619–633.
| A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation.Crossref | GoogleScholarGoogle Scholar | 1385266PubMed |
Thackway R, Cresswell I (1995) ‘An interim biogeographic regionalisation for Australia: a framework for setting priorities in the National Reserves System Cooperative Program.’ (Australian Nature Conservation Agency, Reserve Systems Unit: Canberra, ACT, Australia)
Uribe-Convers S, Settles ML, Tank DC (2016) A phylogenomic approach based on PCR target enrichment and high throughput sequencing: resolving the diversity within the south American species of Bartsia L. (Orobanchaceae). PLoS One 11, e0148203.
| A phylogenomic approach based on PCR target enrichment and high throughput sequencing: resolving the diversity within the south American species of Bartsia L. (Orobanchaceae).Crossref | GoogleScholarGoogle Scholar | 26828929PubMed |
Vachon N, Freeland JR (2011) Phylogeographic inferences from chloroplast DNA: quantifying the effects of mutations in repetitive and non-repetitive sequences. Molecular Ecology Resources 11, 279–285.
| Phylogeographic inferences from chloroplast DNA: quantifying the effects of mutations in repetitive and non-repetitive sequences.Crossref | GoogleScholarGoogle Scholar | 21429134PubMed |
van der Merwe M, Crayn DM, Ford AJ, Weston PH, Rossetto M (2016) Evolution of Australian Cryptocarya (Lauraceae) based on nuclear and plastid phylogenetic trees: evidence of recent landscape-level disjunctions. Australian Systematic Botany 29, 157–166.
| Evolution of Australian Cryptocarya (Lauraceae) based on nuclear and plastid phylogenetic trees: evidence of recent landscape-level disjunctions.Crossref | GoogleScholarGoogle Scholar |
Walter R, Epperson BK (2001) Geographic pattern of genetic variation in Pinus resinosa: area of greatest diversity is not the origin of postglacial populations. Molecular Ecology 10, 103–111.
| Geographic pattern of genetic variation in Pinus resinosa: area of greatest diversity is not the origin of postglacial populations.Crossref | GoogleScholarGoogle Scholar | 11251791PubMed |
Wan JN, Guo YP, Rao GY (2020) Unraveling independent origins of two tetraploid Achillea species by amplicon sequencing. Journal of Systematics and Evolution 58, 913–924.
| Unraveling independent origins of two tetraploid Achillea species by amplicon sequencing.Crossref | GoogleScholarGoogle Scholar |
Webb JA, James JM (2006) Special paper 404: perspectives on Karst geomorphology, hydrology, and geochemistry – a tribute volume to Derek C. Ford and William B. White. Geological Society of America.
Wheeler MA, Byrne M (2006) Congruence between phylogeographic patterns in cpDNA variation in Eucalyptus marginata (Myrtaceae) and geomorphology of the Darling Plateau, south-west of Western Australia. Australian Journal of Botany 54, 17–26.
| Congruence between phylogeographic patterns in cpDNA variation in Eucalyptus marginata (Myrtaceae) and geomorphology of the Darling Plateau, south-west of Western Australia.Crossref | GoogleScholarGoogle Scholar |
Worth JRP, Jordan GJ, McKinnon GE, Vaillancourt RE (2009) The major Australian cool temperate rainforest tree Nothofagus cunninghamii withstood Pleistocene glacial aridity within multiple regions: evidence from the chloroplast. New Phytologist 182, 519–532.
| The major Australian cool temperate rainforest tree Nothofagus cunninghamii withstood Pleistocene glacial aridity within multiple regions: evidence from the chloroplast.Crossref | GoogleScholarGoogle Scholar |
Worth JRP, Marthick JR, Jordan GJ, Vaillancourt RE (2011) Low but structured chloroplast diversity in Atherosperma moschatum (Atherospermataceae) suggests bottlenecks in response to the Pleistocene glacials. Annals of Botany 108, 1247–1256.
| Low but structured chloroplast diversity in Atherosperma moschatum (Atherospermataceae) suggests bottlenecks in response to the Pleistocene glacials.Crossref | GoogleScholarGoogle Scholar |
Worth JRP, Holland BR, Beeton NJ, Schönfeld B, Rossetto M, Vaillancourt RE, Jordan GJ (2017) Habitat type and dispersal mode underlie the capacity for plant migration across an intermittent seaway. Annals of Botany 120, 539–549.
| Habitat type and dispersal mode underlie the capacity for plant migration across an intermittent seaway.Crossref | GoogleScholarGoogle Scholar | 28961707PubMed |
Worth JRP, Sakaguchi S, Harrison PA, Brüniche-Olsen A, Janes JK, Crisp MD, Bowman DMJS (2018a) Pleistocene divergence of two disjunct conifers in the eastern Australian temperate zone. Biological Journal of the Linnean Society. Linnean Society of London
| Pleistocene divergence of two disjunct conifers in the eastern Australian temperate zone.Crossref | GoogleScholarGoogle Scholar |
Worth JRP, Sakaguchi S, Harrison PA, Brüniche-Olsen A, Janes JK, Crisp MD, Bowman DMJS (2018b) Pleistocene divergence of two disjunct conifers in the eastern Australian temperate zone. Biological Journal of the Linnean Society. Linnean Society of London 125, 459–474.
| Pleistocene divergence of two disjunct conifers in the eastern Australian temperate zone.Crossref | GoogleScholarGoogle Scholar |
Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research 31, 3406–3415.
| Mfold web server for nucleic acid folding and hybridization prediction.Crossref | GoogleScholarGoogle Scholar | 12824337PubMed |
