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Australian Systematic Botany Australian Systematic Botany Society
Taxonomy, biogeography and evolution of plants
RESEARCH ARTICLE

Generic delimitation and phylogenetic uncertainty:
an example from a group that has undergone an explosive radiation

L. A. Orthia A B , L. G. Cook A and M. D. Crisp A
+ Author Affiliations
- Author Affiliations

A School of Botany and Zoology, The Australian National University, Canberra, ACT 0200, Australia.

B Corresponding author. Email: lindy.orthia@anu.edu.au

Australian Systematic Botany 18(1) 41-47 https://doi.org/10.1071/SB04016
Submitted: 3 June 2004  Accepted: 9 September 2004   Published: 29 March 2005

Abstract

Phylogenetic trees can provide a stable basis for a higher-level classification of organisms that reflects evolutionary relationships. However, some lineages have a complex evolutionary history that involves explosive radiation or hybridisation. Such histories have become increasingly apparent with the use of DNA sequence data for phylogeny estimation and explain, in part, past difficulties in producing stable morphology-based classifications for some groups. We illustrate this situation by using the example of tribe Mirbelieae (Fabaceae), whose generic classification has been fraught for decades. In particular, we discuss a recent proposal to combine 19 of the 25 Mirbelieae genera into a single genus, Pultenaea sens. lat., and how we might find stable and consistent ways to squeeze something as complex as life into little boxes for our own convenience.


References


Arnold ML (2004) Transfer and origin of adaptations through natural hybridization: were Anderson and Stebbins right? The Plant Cell 16, 562–570.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Baum DA, Donoghue MJ (1995) Choosing among alternative ‘phylogenetic’ species concepts. Systematic Botany 20, 560–573. open url image1

Bentham, G (1864). ‘Flora Australiensis. Vol. 2.’ (Lovell Reeve and Co.: London)

Brummitt RK (2002) How to chop up a tree. Taxon 51, 31–41. open url image1

Chandler GT, Bayer RJ, Crisp MD (2001) A molecular phylogeny of the endemic Australian genus Gastrolobium (Fabaceae: Mirbelieae) and allied genera using chloroplast and nuclear markers. American Journal of Botany 88, 1675–1687. open url image1

Clayton WD (1972) Some aspects of the genus concept. Kew Bulletin 27, 281–287. open url image1

Crisp MD, Chandler GT (1996) Paraphyletic species. Telopea 6, 813–844. open url image1

Crisp, MD ,  and  Cook, LG (2003a). Phylogeny and embryo sac evolution in the endemic Australasian papilionoid tribes Mirbelieae and Bossiaeeae. In ‘Advances in legume systematics. 10: Higher level systematics’. a. pp. 253–268. (Royal Botanic Gardens Kew: UK)

Crisp MD, Cook LG (2003b) Molecular evidence for definition of genera in the Oxylobium group (Fabaceae: Mirbelieae). Systematic Botany 28, 705–713. open url image1

Crisp MD, Weston PH (1991) Almaleea, a new genus of Fabaceae from south-eastern Australia. Telopea 4, 307–311. open url image1

Crisp, MD ,  and  Weston, PH (1995). Mirbelieae. In ‘Advances in legume systematics. 7: Phylogeny’. pp. 245–282. (Royal Botanic Gardens Kew

Crisp MD, Gilmore SR, Weston PH (1999) Phylogenetic relationships of two anomalous species of Pultenaea (Fabaceae: Mirbelieae), and description of a new genus. Taxon 48, 701–714. open url image1

Desmet PG, Cowling RM, Ellis AG, Pressey RL (2002) Integrating biosystematic data into conservation planning: perspectives from southern Africa’s succulent karoo. Systematic Biology 51, 317–330.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Doerries MB, Van Dover CL (2003) Higher-taxon richness as a surrogate for species richness in chemosynthetic communities. Deep-Sea Research Part I – Oceanographic Research Papers 50, 749–755.
Crossref | GoogleScholarGoogle Scholar | open url image1

Faith DP (1994) Phylogenetic pattern and the quantification of organismal biodiversity. Philosophical Transactions of the Royal Society of London B 345, 45–58. open url image1

Fukami H, Budd AF, Paulay G, Sole-Cava A, Chen CLA, Iwao K, Knowlton N (2004) Conventional taxonomy obscures deep divergence between Pacific and Atlantic corals. Nature 427, 832–835.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Funk DJ, Omland KE (2003) Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annual Review of Ecology, Evolution and Systematics 34, 397–423.
Crossref | GoogleScholarGoogle Scholar | open url image1

Genner MJ, Seehausen O, Cleary DFR, Knight ME, Michel E, Turner GF (2004) How does the taxonomic status of allopatric populations influence species richness within African cichlid fish assemblages? Journal of Biogeography 31, 93–102. open url image1

Gross BL, Schwarzbach AE, Rieseberg LH (2003) Origin(s) of the diploid hybrid species Helianthus deserticola (Asteraceae). American Journal of Botany 90, 1708–1719. open url image1

Hoelzer GA, Melnick DJ (1994) Patterns of speciation and limits to phylogenetic resolution. Trends in Ecology and Evolution 9, 104–107.
Crossref | GoogleScholarGoogle Scholar | open url image1

Kadereit G, Borsch T, Weising K, Freitag H (2003) Phylogeny of Amaranthaceae and Chenopodiaceae and the evolution of C4 photosynthesis. International Journal of Plant Sciences 164, 959–986.
Crossref | GoogleScholarGoogle Scholar | open url image1

Lee DE, Lee WG, Mortimer N (2001) Where and why have all the flowers gone? Depletion and turnover in the New Zealand Cenozoic angiosperm flora in relation to palaeogeography and climate. Australian Journal of Botany 49, 341–356.
Crossref | GoogleScholarGoogle Scholar | open url image1

Lee MSY (1995) Species concepts and the recognition of ancestors. Historical Biology 10, 329–339. open url image1

Lei FM, Qu YH, Tang QQ, An SC (2003) Priorities for the conservation of avian biodiversity in China based on the distribution patterns of endemic bird genera. Biodiversity and Conservation 12, 2487–2501.
Crossref | GoogleScholarGoogle Scholar | open url image1

Maddison WP (1997) Gene trees in species trees. Systematic Biology 46, 523–536. open url image1

McKinnon GE, Vaillancourt RE, Jackson HD, Potts BM (2001) Chloroplast sharing in the Tasmanian eucalypts. Evolution 55, 703–711.
PubMed |
open url image1

Mummenhoff K, Brüggemann H, Bowman JL (2001) Chloroplast DNA phylogeny and biogeography of Lepidium (Brassicaceae). American Journal of Botany 88, 2051–2063. open url image1

Orthia LA, Crisp MD, Cook LG, de Kok RPJ (2005) Bush peas: a rapid radiation with no support for monophyly of Pultenaea (Fabaceae: Mirbelieae). Australian Systematic Botany (In Press) , open url image1

de Queiroz K, Donoghue MJ (1988) Phylogenetic systematics and the species problem. Cladistics 4, 317–388. open url image1

de Queiroz K, Donoghue MJ (1990) Phylogenetic systematics or Nelson’s version of cladistics? Cladistics 6, 61–75. open url image1

Quinn CJ, Crayn DM, Heslewood MM, Brown EA, Gadek PA (2003) A molecular estimate of the phylogeny of Styphelieae (Ericaceae). Australian Systematic Botany 16, 581–594.
Crossref | GoogleScholarGoogle Scholar | open url image1

Sanmartín I, Ronquist F (2004) Southern hemisphere biogeography inferred by event-based models: plant versus animal patterns. Systematic Biology 53, 216–243.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Scotland RW, Sanderson MJ (2004) The significance of few versus many in the tree of life. Science 303, 643– .
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Stevens PF (1997) How to interpret botanical classifications—suggestions from history. Bioscience 47, 243–250. open url image1

Stevens PF (2002) Why do we name organisms? Some reminders from the past. Taxon 51, 11–26. open url image1

Vijverberg K, Mes THM, Bachmann K (1999) Chloroplast DNA evidence for the evolution of Microseris (Asteraceae) in Australia and New Zealand after long-distance dispersal from western North America. American Journal of Botany 86, 1448–1463.
PubMed |
open url image1

Williams PH, Humphries CJ, Gaston KJ (1994) Centres of seed-plant diversity: the family way. Proceedings of the Royal Society of London. Series B. Biological Sciences 256, 67–70. open url image1