Register      Login
Marine and Freshwater Research Marine and Freshwater Research Society
Advances in the aquatic sciences
RESEARCH ARTICLE (Open Access)

Subjective judgement in data subsetting: implications for CPUE standardisation and stock assessment of non-target chondrichthyans

J. M. Braccini A C D , M.-P. Etienne A B and S. J. D. Martell A
+ Author Affiliations
- Author Affiliations

A Fisheries Centre, The University of British Columbia, Vancouver, BC V6T1Z4, Canada.

B AgroParisTech, UMR MIA 518, 75231 Paris, France.

C Agri-Science Queensland, Queensland Department of Employment, Economic Development and Innovation, Ecoscience Precinct, GPO Box 46, Brisbane, Qld 4001, Australia.

D Corresponding author. Email: m.braccini@fisheries.ubc.ca

Marine and Freshwater Research 62(6) 734-743 https://doi.org/10.1071/MF10172
Submitted: 26 June 2010  Accepted: 10 November 2010   Published: 24 June 2011

Journal Compilation © CSIRO Publishing 2011 Open Access CC BY-NC-ND

Abstract

Standardisation of catch-per-effort (CPUE) data is an essential component for nearly all stock assessments. The first step in CPUE standardisation is to separate the comparable from the non-comparable catch and effort records and this is normally done based on subjective rules. In the present study, we used catch-and-effort data from the elephant fish (Callorhinchus milii) to illustrate the differences in CPUE when using expert judgement to define different ad hoc selection criteria used to subset these data. The data subsets were then used in the standardisation of CPUE and the stock assessment of elephant fish. The catch-and-effort subsets produced different patterns of precision and trends, each of which led to different estimates (and related uncertainty) of model parameters and management reference points. For most CPUE series, there was a very high probability that the elephant fish stock is overexploited and that overfishing is occurring. The estimates of total allowable catch (TAC) and the uncertainty around these estimates also varied considerably depending on the CPUE series used. Our study shows how sensitive TAC estimation is when there is high uncertainty in the definition of the fishing effort targeted at the species analysed.

Additional keywords: Bayesian, chimaeras, rays, sharks, subjectivity, uncertainty.


References

Aires-da-Silva, A. M., Hoey, J. J., and Gallucci, V. F. (2008). A historical index of abundance for the blue shark (Prionace glauca) in the western North Atlantic. Fisheries Research 92, 41–52.
A historical index of abundance for the blue shark (Prionace glauca) in the western North Atlantic.Crossref | GoogleScholarGoogle Scholar |

Boero Rodriguez, V., and McLoughlin, K. (2009). Elephant fish CPUE standardisation and Tier 4 assessment, 2009. Bureau of Rural Sciences, Canberra.

Braccini, J. M., Gillanders, B. M., and Walker, T. I. (2006). Hierarchical approach to the assessment of fishing effects on non-target chondrichthyans: case study of Squalus megalops in southeastern Australia. Canadian Journal of Fisheries and Aquatic Sciences 63, 2456–2466.
Hierarchical approach to the assessment of fishing effects on non-target chondrichthyans: case study of Squalus megalops in southeastern Australia.Crossref | GoogleScholarGoogle Scholar |

Braccini, J. M., Walker, T. I., and Conron, S. D. (2009). Evaluation of effects of targeting breeding elephant fish by recreational fishers in Western Port. Final report to Fisheries Revenue Allocation Committee. Marine and Freshwater Fisheries Research Institute, Department of Primary Industries, Queenscliff.

Campbell, R. A. (2004). CPUE standardisation and the construction of indices of stock abundance in a spatially varying fishery using general linear models. Fisheries Research 70, 209–227.
CPUE standardisation and the construction of indices of stock abundance in a spatially varying fishery using general linear models.Crossref | GoogleScholarGoogle Scholar |

FAO (2000). Fisheries management. 1 Conservation and management of sharks. Food and Agriculture Organization of the United Nations, Report 4 supplement 1, Rome.

Harley, S. J., Myers, R. A., and Dunn, A. (2001). Is catch-per-unit-effort proportional to abundance? Canadian Journal of Fisheries and Aquatic Sciences 58, 1760–1772.
Is catch-per-unit-effort proportional to abundance?Crossref | GoogleScholarGoogle Scholar |

Hilborn, R., and Walters, C. J. (1992). ‘Quantitative Fisheries Stock Assessment: Choice, Dynamics and Uncertainty.’ (Chapman & Hall: New York.)

Leamer, E. E. (1978). ‘Specification Searches.’ (Wiley: New York.)

Lenfest Ocean Program (2009). An integrated approach to determining the risk of over-exploitation for data-poor pelagic Atlantic sharks. Lenfest Ocean Program, Washington. Available from http://www.lenfestocean.org/ICCAT_sharks_catch_limits09_08.pdf [Verified 16 March 2011].

Maunder, M. N. (2001). A general framework for integrating the standardization of catch per unit of effort into stock assessment models. Canadian Journal of Fisheries and Aquatic Sciences 58, 795–803.
A general framework for integrating the standardization of catch per unit of effort into stock assessment models.Crossref | GoogleScholarGoogle Scholar |

Maunder, M. N., and Punt, A. E. (2004). Standardizing catch and effort data: a review of recent approaches. Fisheries Research 70, 141–159.
Standardizing catch and effort data: a review of recent approaches.Crossref | GoogleScholarGoogle Scholar |

Maunder, M. N., Sibert, J. R., Fonteneau, A., Hampton, J., Kleiber, P., et al. (2006). Interpreting catch per unit effort data to assess the status of individual stocks and communities. ICES Journal of Marine Science 63, 1373–1385.
Interpreting catch per unit effort data to assess the status of individual stocks and communities.Crossref | GoogleScholarGoogle Scholar |

McAllister, M. K., Pikitch, E. K., and Babcock, E. A. (2001). Using demographic methods to construct Bayesian priors for the intrinsic rate of increase in the Schaefer model and implications for stock rebuilding. Canadian Journal of Fisheries and Aquatic Sciences 58, 1871–1890.
Using demographic methods to construct Bayesian priors for the intrinsic rate of increase in the Schaefer model and implications for stock rebuilding.Crossref | GoogleScholarGoogle Scholar |

Meyer, R., and Millar, R. B. (1999). BUGS in Bayesian stock assessments. Canadian Journal of Fisheries and Aquatic Sciences 56, 1078–1087.
BUGS in Bayesian stock assessments.Crossref | GoogleScholarGoogle Scholar |

Olsen, A. M. (1959). The status of the school shark fishery in south-eastern Australian waters. Australian Journal of Marine and Freshwater Research 10, 150–176.
The status of the school shark fishery in south-eastern Australian waters.Crossref | GoogleScholarGoogle Scholar |

Plummer, M. (2008). JAGS Version 1.0.2 manual. Lyon, France.

Punt, A. E., and Walker, T. I. (1998). Stock assessment and risk analysis for the school shark (Galeorhinus galeus) off southern Australia. Marine and Freshwater Research 49, 719–731.
Stock assessment and risk analysis for the school shark (Galeorhinus galeus) off southern Australia.Crossref | GoogleScholarGoogle Scholar |

Punt, A. E., Walker, T. I., Taylor, B. L., and Pribac, F. (2000). Standardization of catch and effort data in a spatially-structured shark fishery. Fisheries Research 45, 129–145.
Standardization of catch and effort data in a spatially-structured shark fishery.Crossref | GoogleScholarGoogle Scholar |

Punt, A. E., Walker, T. I., and Gason, A. S. (2004). Initial assessments of sawshark (Pristiophorus cirratus and P. nudipinnis) and elephant fish (Callorhinchus milii). In ‘Stock Assessment for South East and Southern Shark Fishery Species’. (Eds G. N. Tuck and A. D. M. Smith.) pp. 335–369. (CSIRO Marine Research: Hobart.)

Schnute, J. T., and Kronlund, A. R. (2002). Estimating salmon stock–recruitment relationships from catch and escapement data. Canadian Journal of Fisheries and Aquatic Sciences 59, 433–449.
Estimating salmon stock–recruitment relationships from catch and escapement data.Crossref | GoogleScholarGoogle Scholar |

Shark Advisory Group, and Lack, M. (2004). National plan of action for the conservation and management of sharks (Shark Plan). Department of Agriculture, Fisheries and Forestry, Canberra.

Spiegelhalter, D., Thomas, A., Best, N., and Lunn, D. (2003). ‘WinBUGS Version 1.4 User Manual.’ (MRC Biostatistics Unit: Cambridge.)

Stephens, A., and MacCall, A. (2004). A multispecies approach to subsetting logbook data for purposes of estimating CPUE. Fisheries Research 70, 299–310.
A multispecies approach to subsetting logbook data for purposes of estimating CPUE.Crossref | GoogleScholarGoogle Scholar |

Vignaux, M. (1994). Catch per unit effort (CPUE) analysis of west coast South Island Cook Strait spawning hoki fisheries, 1987–93. New Zealand Fisheries Association Research Document No. 94/11, Wellington, New Zealand.

Walker, T. I. (1998). Can shark resources be harvested sustainably? A question revisited with a review of shark fisheries. Marine and Freshwater Research 49, 553–572.
Can shark resources be harvested sustainably? A question revisited with a review of shark fisheries.Crossref | GoogleScholarGoogle Scholar |

Walker, T. I., and Gason, A. S. (2009). SESSF monitoring data management, reporting and documentation 2006/07. Fisheries Research Brand, Department of Primary Industries, Final report to Australian Fisheries Management Authority Project No. R2006/812, Queenscliff.

Zhang, Z., and Holmes, J. (2009). Generalized linear Bayesian models for standardization of CPUE with incorporation of spatial–temporal variations. Western and Central Pacific Fisheries Commission, Vanuatu.