Population genetic structure and genetic diversity of Acetes chinensis in the East China Sea
Zhaochao Deng
A , Hui Liu B and Zhiqiang Han A C
+ Author Affiliations
- Author Affiliations
A Fishery College, Zhejiang Ocean University, 1 Haida South Road, Zhoushan, Zhejiang, 316002, PR China.
B Shengzhou Bureau of Agriculture and Rural Affairs, 47 Yuexiu North Road, Shaoxing, Zhejiang, 312400, PR China.
C Corresponding author. Email: d6339124@163.com
Marine and Freshwater Research - https://doi.org/10.1071/MF20231
Submitted: 26 July 2020 Accepted: 7 August 2020 Published online: 17 September 2020
Abstract
The northern mauxia shrimp (Acetes chinensis) is a widely distributed species, and is the main food for many fish of economic importance and other marine organisms. Unfortunately, research on the genetic diversity and differentiation of the A. chinensis population is lacking. We investigated the population genetic structure and genetic diversity of A. chinensis in the East China Sea using the mitochondrial DNA cytochrome c oxidase I (COI) gene. Low overall haplotype diversity, but moderate overall nucleotide diversity, was found compared with other shrimp species. The results also demonstrated that there were two different groups in this region. The patterns of population demography suggest that both Lineages I and II experienced sudden expansions. The findings of this study provide basic information for the protection and management of A. chinensis in the East China Sea.
Keywords: COI, cytochrome c oxidase I, mitochondrial DNA, northern mauxia shrimp, Sergestidae.
References
Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate – a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society – B. Statistical Methodology 57, 289–300.| Controlling the false discovery rate – a practical and powerful approach to multiple testing.Crossref | GoogleScholarGoogle Scholar |
Dong, Y.-W., Wang, H.-S., Han, G.-D., Ke, C.-h., Zhan, X., Nakano, T., and Williams, G. A. (2012). The impact of Yangtze River discharge, ocean currents and historical events on the biogeographic pattern of Cellana toreuma along the China Coast. PLoS One 7, e36178.
| The impact of Yangtze River discharge, ocean currents and historical events on the biogeographic pattern of Cellana toreuma along the China Coast.Crossref | GoogleScholarGoogle Scholar | 22563446PubMed |
Du, X., Cai, S., Yu, C., Jiang, X., Lin, L., Gao, T., and Han, Z. (2016). Population genetic structure of mantis shrimps Oratosquilla oratoria: testing the barrier effect of the Yangtze River outflow. Biochemical Systematics and Ecology 66, 12–18.
| Population genetic structure of mantis shrimps Oratosquilla oratoria: testing the barrier effect of the Yangtze River outflow.Crossref | GoogleScholarGoogle Scholar |
Excoffier, L., and Lischer, H. E. L. (2010). Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10, 564–567.
| Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows.Crossref | GoogleScholarGoogle Scholar | 21565059PubMed |
Feng, J., Sun, Y., Cheng, X., and Li, J. (2008). Sequence analysis of mitochondrial COI gene of Macrobrachium nipponense from the five largest freshwater lakes in China. Shuichan Xuebao 32, 517–525.
Folmer, O., Black, M., Wr, H., Lutz, R., and Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3, 294–299.
| 7881515PubMed |
Fu, Y. X. (1997). Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147, 915–925.
| 9335623PubMed |
Han, Z. Q., Zheng, W., Zhu, W. B., Yu, C. G., Shui, B. N., and Gao, T. X. (2015a). A barrier to gene flow in the Asian paddle crab, Charybdis japonica, in the Yellow Sea. ICES Journal of Marine Science 72, 1440–1448.
| A barrier to gene flow in the Asian paddle crab, Charybdis japonica, in the Yellow Sea.Crossref | GoogleScholarGoogle Scholar |
Han, Z. Q., Zhu, W. B., Zheng, W., Li, P. F., and Shui, B. N. (2015b). Significant genetic differentiation between the Yellow Sea and East China Sea populations of cocktail shrimp Trachypenaeus curvirostris revealed by the mitochondrial DNA COI gene. Biochemical Systematics and Ecology 59, 78–84.
| Significant genetic differentiation between the Yellow Sea and East China Sea populations of cocktail shrimp Trachypenaeus curvirostris revealed by the mitochondrial DNA COI gene.Crossref | GoogleScholarGoogle Scholar |
Kang, J. H., Noh, E. S., Park, J. Y., An, C. M., Choi, J. H., and Kim, J. K. (2015). Rapid origin determination of the northern mauxia shrimp (Acetes chinensis) based on allele specific polymerase chain reaction of partial mitochondrial 16S rRNA gene. Asian–Australasian Journal of Animal Sciences 28, 568–572.
| Rapid origin determination of the northern mauxia shrimp (Acetes chinensis) based on allele specific polymerase chain reaction of partial mitochondrial 16S rRNA gene.Crossref | GoogleScholarGoogle Scholar | 25656197PubMed |
Kim, S., Kim, J., Choi, H. G., Park, J. K., and Min, G. S. (2012). Complete mitochondrial genome of the northern mauxia shrimp Acetes chinensis (Decapoda, Dendrobranchiata, Sergestoidae). Mitochondrial DNA 23, 28–30.
| Complete mitochondrial genome of the northern mauxia shrimp Acetes chinensis (Decapoda, Dendrobranchiata, Sergestoidae).Crossref | GoogleScholarGoogle Scholar | 22295863PubMed |
Lee, T. N., Rooth, C., Williams, E., Mcgowan, M., Szmant, A. F., and Clarke, M. E. (1992). Influence of Florida Current, gyres and wind-driven circulation on transport of larvae and recruitment in the Florida Keys coral reefs. Continental Shelf Research 12, 971–1002.
| Influence of Florida Current, gyres and wind-driven circulation on transport of larvae and recruitment in the Florida Keys coral reefs.Crossref | GoogleScholarGoogle Scholar |
Li, Y. L., Kong, X. Y., Yu, Z. N., Kong, J., Ma, S., and Chen, L. M. (2009). Genetic diversity and historical demography of Chinese shrimp Feneropenaeus chinensis in Yellow Sea and Bohai Sea based on mitochondrial DNA analysis. African Journal of Biotechnology 8, 1193–1202.
Liu, C. X., and Zhang, Z. D. (1981). On the larval development of Acetes chinensis Hansen. Dong Wu Xue Bao 27, 318–326.
Mao, Z. C. (2016). Phylogenetic analysis of five marine economic shrimps basing on the mtDNA genomes sequence. M.Sc. Thesis, Shanghai Ocean University, Shanghai, PR China. [In Chinese].
Meng, X. H., Kong, J., Wang, Q. Y., and Liu, P. (2008). Study on seven geographic populations of prawn Fenneropenaeus chinensis based on microsatellite DNA. Marine Fisheries Research 29, 1–10.
Oh, C. W., and Jeong, I. J. (2003). Reproduction and population dynamics of Acetes chinensis (Decapoda: Sergestidae) on the western coast of Korea, Yellow Sea. Journal of Crustacean Biology 23, 827–835.
| Reproduction and population dynamics of Acetes chinensis (Decapoda: Sergestidae) on the western coast of Korea, Yellow Sea.Crossref | GoogleScholarGoogle Scholar |
Rogers, A. R., and Harpending, H. (1992). Population-growth makes waves in the distribution of pairwise genetic-differences. Molecular Biology and Evolution 9, 552–569.
| 1316531PubMed |
Saitou, N., and Nei, M. (1987). The neighbor-joining method – a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406–425.
| The neighbor-joining method – a new method for reconstructing phylogenetic trees.Crossref | GoogleScholarGoogle Scholar | 3447015PubMed |
Sambrook, J., Fritsch, E. F., and Maniatis, T. (1982). ‘Molecular Cloning: A Laboratory Manual’, 1st edn. (Cold Spring Harbor Laboratory Press: New York, NY, USA.)
Song, H. T., Yu, C. G., Xue, L. J., and Yao, G. Z. (2006). ‘Economic Shrimps and Crabs in the East China Sea’, 1st edn. (Ocean Press: Beijing, PR China.) [In Chinese].
Song, H. T., Yu, C. G., and Xue, L. J. (2012). ‘Biological Researches on Economic Shrimps and Crabs in the East China Sea’, 1st edn. (Ocean Press: Beijing, PR China.) [In Chinese].
Tajima, F. (1989). Statistical-method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585–595.
| 2513255PubMed |
Tamura, K., and Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial-DNA in humans and chimpanzees. Molecular Biology and Evolution 10, 512–526.
| 8336541PubMed |
Tamura, K., Stecher, G., Peterson, D., Filipski, A., and Kumar, S. (2013). MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30, 2725–2729.
| MEGA6: molecular evolutionary genetics analysis version 6.0.Crossref | GoogleScholarGoogle Scholar | 24132122PubMed |
Zheng, Z., and Zheng, Z. Z. (1959). A decade of marine zooplankton research in China. Oceanologia et Limnologia Sinica 2, 214–222.
Zheng, F., Lu, X. L., Sun, H. Y., and Zhao, Q. (2006). Genetic differentiation of Sinopotamon yangtsekiense based on mitochondrial cytochrome oxidase subunit I gene. Journal of Nanjing Normal University (Natural Science Edition) 29, 103–105.
