Genes determining panicle morphology and grain quality in rice (Oryza sativa)
Birendra Prasad Shaw A * , Sudhanshu Sekhar A , Binay Bhushan Panda A , Gyanasri Sahu A , Tilak Chandra A and Ajay Kumar Parida AA Institute of Life Sciences, Nalco Square, Bhubaneswar-751023, Odisha, India.
Functional Plant Biology 49(8) 673-688 https://doi.org/10.1071/FP21346
Submitted: 7 December 2021 Accepted: 2 May 2022 Published: 23 May 2022
© 2022 The Author(s) (or their employer(s)). Published by CSIRO Publishing
Abstract
The world’s increase in rice (Oryza sativa L.) production is not keeping up with the increase in its population. To boost the introduction of new high-yielding cultivars, knowledge is being gained on the genes and quantitative trait loci (QTLs) determining the panicle phenotype. The important are those determining yield of the crop, such as grain numbers per panicle and size and weight of the grains. Biochemical and molecular functions of many of them are understood in some details. Among these, OsCKX2 and OsSPL14 have been shown to increase panicle branching and grain numbers when overexpressed. Furthermore, miRNAs appear to play an important role in determining the panicle morphology by regulating the expressions of the genes like OsSPL14 and GRF4 involved in panicle branching and grain numbers and length. Mutations also greatly influence the grain shape and size. However, the information gained so far on the genetic regulation of grain filling and panicle morphology has not been successfully put into commercial application. Furthermore, the identification of the gene(s)/QTLs regulating panicle compactness is still lacking, which may enable the researchers to convert a compact-panicle cultivar into a lax/open one, and thereby increasing the chances of enhancing the yield of a desired compact-panicle cultivar obtained by the breeding effort.
Keywords: grain filling, grain number, grain size, inter-grain space, lax-panicle, Oryza sativa, panicle compactness, panicle morphology, rice production.
References
Ashikari M, Sakakibara H, Lin S, Yamamoto T, Takashi T, Nishimura A, Angeles ER, Qian Q, Kitano H, Matsuoka M (2005) Cytokinin oxidase regulates rice grain production. Science 309, 741–745.Bradley D, Ratcliffe O, Vincent C, Carpenter R, Coen E (1997) Inflorescence commitment and architecture in Arabidopsis. Science 275, 80–83.
| Inflorescence commitment and architecture in Arabidopsis.Crossref | GoogleScholarGoogle Scholar | 8974397PubMed |
Chandra T, Mishra S, Panda BB, Sahu G, Dash SK, Shaw BP (2021) Study of expressions of miRNAs in the spikelets based on their spatial location on panicle in rice cultivars provided insight into their influence on grain development. Plant Physiology and Biochemistry 159, 244–256.
| Study of expressions of miRNAs in the spikelets based on their spatial location on panicle in rice cultivars provided insight into their influence on grain development.Crossref | GoogleScholarGoogle Scholar | 33388659PubMed |
Chen X, Jiang L, Zheng J, Chen F, Wang T, Wang M, Tao Y, Wang H, Hong Z, Huang Y, Huang R (2019) A missense mutation in Large Grain Size 1 increases grain size and enhances cold tolerance in rice. Journal of Experimental Botany 70, 3851–3866.
| A missense mutation in Large Grain Size 1 increases grain size and enhances cold tolerance in rice.Crossref | GoogleScholarGoogle Scholar | 31020332PubMed |
Cheng S-H, Zhuang JY, Fan Y-Y, Du J-H, Cao LY (2007) Progress in research and development on hybrid rice: a super-domesticate in China. Annals of Botany 100, 959–966.
| Progress in research and development on hybrid rice: a super-domesticate in China.Crossref | GoogleScholarGoogle Scholar | 17704538PubMed |
Choi BS, Kim YJ, Markkandan K, Koo YJ, Song JT, Seo HS (2018) GW2 functions as an E3 ubiquitin ligase for rice Expansin-Like 1. International Journal of Molecular Sciences 19, 1904
| GW2 functions as an E3 ubiquitin ligase for rice Expansin-Like 1.Crossref | GoogleScholarGoogle Scholar |
Das K, Panda BB, Sekhar S, Kariali E, Mohapatra PK, Shaw BP (2016) Comparative proteiomics of the superior and inferior spikelets at the early grain filling stage in rice cultivars contrast for panicle compactness. Journal of Plant Physiology 202, 65–74.
| Comparative proteiomics of the superior and inferior spikelets at the early grain filling stage in rice cultivars contrast for panicle compactness.Crossref | GoogleScholarGoogle Scholar | 27450495PubMed |
Das K, Panda BB, Shaw BP, Das SR, Dash S, Kariali E, Mohapatra PK (2018) Grain density and its impact on grain filling characteristic of rice: mechanistic testing of the concept in genetically related cultivars. Scientific Reports 8, 4149
| Grain density and its impact on grain filling characteristic of rice: mechanistic testing of the concept in genetically related cultivars.Crossref | GoogleScholarGoogle Scholar | 29515145PubMed |
Duan P, Rao Y, Zeng D, Yang Y, Xu R, Zhang B, Dong G, Qian Q, Li Y (2014) SMALL GRAIN 1, which encodes a mitogen-activated protein kinase kinase 4, influences grain size in rice. The Plant Journal 77, 547–557.
| SMALL GRAIN 1, which encodes a mitogen-activated protein kinase kinase 4, influences grain size in rice.Crossref | GoogleScholarGoogle Scholar | 24320692PubMed |
Fan C, Xing Y, Mao H, Lu T, Han B, Xu C, Li X, Zhang Q (2006) GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theoretical and Applied Genetics 112, 1164–1171.
| GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein.Crossref | GoogleScholarGoogle Scholar | 16453132PubMed |
FAO (2009) High level expert forum – How to Feed the World in 2050. Economic and social development department. Food and Agricultural Organization of the United Nations, Rome. Available at http://www.fao.org/fileadmin/templates/wsfs/docs/expert_paper/How_to_Feed_the_World_in_2050.pdf.2009.
FAO (2020) World food and agriculture. Statistical yearbook 2020. The Food and Agriculture Organization of the United Nations, p. 3.
Fujita D, Trijatmiko KR, Tagle AG, Sapasap MV, Koide Y, Sasaki K, Tsakirpaloglou N, Gannaban RB, Nishimura T, Yanagihara S, Fukuta Y, Koshiba T, Slamet-Loedin IH, Ishimaru T, Kobayashi N (2013) NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars. Proceedings of the National Academy of Sciences of the United States of America 110, 20431–20436.
| NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars.Crossref | GoogleScholarGoogle Scholar | 24297875PubMed |
Gao X, Zhang X, Lan H, Huang J, Wang J, Zhang H (2015) The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons. BMC Plant Biology 15, 156
| The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.Crossref | GoogleScholarGoogle Scholar | 26105598PubMed |
Gupta PK, Rustogi S, Kumar N (2006) Genetic and molecular basis of grain size and grain number and its relevance to grain productivity in higher plants. Genome 49, 565–571.
| Genetic and molecular basis of grain size and grain number and its relevance to grain productivity in higher plants.Crossref | GoogleScholarGoogle Scholar | 16936836PubMed |
Horie T, Shiraiwa T, Homma K, Katsura K, Maeda Y, Yoshida H (2005) Can yields of lowland rice resumes the increases that they showed in the 1980s? Plant Production Science 8, 259–274.
| Can yields of lowland rice resumes the increases that they showed in the 1980s?Crossref | GoogleScholarGoogle Scholar |
Hu J, Wang Y, Fang Y, Zeng L, Xu J, Yu H, Shi Z, Pan J, Zhang D, Kang S, Zhu L, Dong G, Guo L, Zeng D, Zhang G, Xie L, Xiong G, Li J, Qian Q (2015) A rare allele of GS2 enhances grain size and grain yield in rice. Molecular Plant 8, 1455–1465.
| A rare allele of GS2 enhances grain size and grain yield in rice.Crossref | GoogleScholarGoogle Scholar | 26187814PubMed |
Huang M, Tang Q-y, Ao H-j, Zou Y-b (2017) Yield potential and stability in super hybrid rice and its production strategies. Journal of Integrated Agriculture 16, 1009–1017.
| Yield potential and stability in super hybrid rice and its production strategies.Crossref | GoogleScholarGoogle Scholar |
Huang X, Qian Q, Liu Z, Sun H, He S, Luo D, Xia G, Chu C, Li J, Fu X (2009) Natural variation at the DEP1 locus enhances grain yield in rice. Nature Genetics 41, 494–497.
| Natural variation at the DEP1 locus enhances grain yield in rice.Crossref | GoogleScholarGoogle Scholar | 19305410PubMed |
Ikeda K, Nagasawa N, Natago Y (2005) ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice. Developmental Biology 282, 349–360.
| ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice.Crossref | GoogleScholarGoogle Scholar | 15950602PubMed |
Ikeda K, Ito M, Nagasawa N, Kyozuka J, Nagato Y (2007) Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate. The Plant Journal 51, 1030–1040.
| Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate.Crossref | GoogleScholarGoogle Scholar | 17666027PubMed |
Ikeda-Kawakatsu K, Yasuno N, Oikawa T, Iida S, Nagato Y, Maekawa M, Kyozuka J (2009) Expression level of ABERRANT PANICLE ORGANIZATION 1 determines rice inflorescence form through control of cell proliferation in the meristem. Plant Physiology 150, 736–747.
| Expression level of ABERRANT PANICLE ORGANIZATION 1 determines rice inflorescence form through control of cell proliferation in the meristem.Crossref | GoogleScholarGoogle Scholar | 19386809PubMed |
Ishimaru K, Hirotsu N, Madoka Y, Murakami N, Hara N, Onodera H, Kashiwagi T, Ujiie K, Shimizu B-i, Onishi A, Miyagawa H, Katoh E (2013) Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield. Nature Genetics 45, 707–711.
| Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield.Crossref | GoogleScholarGoogle Scholar | 23583977PubMed |
Jiao Y, Wang Y, Xue D, Wang J, Yan M, Liu G, Dong G, Zeng D, Lu Z, Zhu X, Qian Q, Li J (2010) Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nature Genetics 42, 541–544.
| Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice.Crossref | GoogleScholarGoogle Scholar | 20495565PubMed |
Kato T (2004) Effect of spikelet removal on the grain filling of Akenohoshi, a rice cultivar with numerous spikelets in a panicle. Journal of Agricultural Science 142, 177–181.
| Effect of spikelet removal on the grain filling of Akenohoshi, a rice cultivar with numerous spikelets in a panicle.Crossref | GoogleScholarGoogle Scholar |
Khush G (2003) Productivity improvement in rice. Nutrition Reviews 61, S114–S116.
| Productivity improvement in rice.Crossref | GoogleScholarGoogle Scholar | 12908742PubMed |
Khush GS (1987) Rice breeding: past, present and future. Journal of Genetics 66, 195–216.
| Rice breeding: past, present and future.Crossref | GoogleScholarGoogle Scholar |
Khush GS (1995) Breaking the yield frontier of rice. GeoJournal 35, 329–332.
| Breaking the yield frontier of rice.Crossref | GoogleScholarGoogle Scholar |
Khush GS, Peng S (1996) Breaking the yield frontier of rice. In ‘Increasing yield potential in wheat: breaking the barriers’. (Eds MP Reynold, S Rajaram, A McNab) pp. 36–51. (International Maize and Wheat Improvement Center: E1 Batan, Mexico)
Khush GS, Coffman WR, Beachell HM (2001) The history of rice breeding: IRRI’s Contribution. In ‘Rice research and production in the 21st Century. Symposium Honoring Robert F. Chandler, Jr.’. (Ed. WG Rockwood) pp. 117–135. (International Rice Research Institute: Los Banos, Philippines)
Kobata T, Yoshida H, Masiko U, Honda T (2013) Spikelet sterility is assiciated with a lack of assimilate in high-spikelet-number rice. Agronomy Journal 105, 1821–1831.
Komatsu M, Maekawa M, Shimamoto K, Kyozuka J (2001) The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development. Developmental Biology 231, 364–373.
| The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development.Crossref | GoogleScholarGoogle Scholar | 11237465PubMed |
Komatsu M, Chujo A, Nagato Y, Shimamoto K, Kyozuka J (2003) FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets. Development 130, 3841–3850.
| FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets.Crossref | GoogleScholarGoogle Scholar | 12835399PubMed |
Kurakawa T, Ueda N, Maekawa M, Kobayashi K, Kojima M, Nagato Y, Sakakibara H, Kyozuka J (2007) Direct control of shoot meristem activity by a cytokinin-activating enzyme. Nature 445, 652–655.
| Direct control of shoot meristem activity by a cytokinin-activating enzyme.Crossref | GoogleScholarGoogle Scholar | 17287810PubMed |
Li S, Qian Q, Fu Z, Zeng D, Meng X, Kyozuka J, Maekawa M, Zhu X, Zhang J, Li J, Wang Y (2009) Short panicle1 encodes a putative PTR family transporter and determines rice panicle size. The Plant Journal 58, 592–605.
| Short panicle1 encodes a putative PTR family transporter and determines rice panicle size.Crossref | GoogleScholarGoogle Scholar | 19154200PubMed |
Li F, Liu W, Tang J, Chen J, Tong H, Hu B, Li C, Fang J, Chen M, Chu C (2010) Rice DENSE AND ERECT PANICLE2 is essential for determining panicle outgrowth and elongation. Cell Research 20, 838–849.
| Rice DENSE AND ERECT PANICLE2 is essential for determining panicle outgrowth and elongation.Crossref | GoogleScholarGoogle Scholar | 20502443PubMed |
Li Y, Fan C, Xing Y, Jiang Y, Luo L, Sun L, Shao D, Xu C, Li X, Xiao J, He Y, Zhang Q (2011) Natural variation in GS5 plays an important role in regulating grain size and yield in rice. Nature Genetics 43, 1266–1269.
| Natural variation in GS5 plays an important role in regulating grain size and yield in rice.Crossref | GoogleScholarGoogle Scholar | 22019783PubMed |
Li-yun C, Ying-hui X, Wen-bang T, Dong-yang L (2007) Practices and prospects of super hybrid rice breeding. Rice Science 14, 71–77.
| Practices and prospects of super hybrid rice breeding.Crossref | GoogleScholarGoogle Scholar |
Liu L, Tong H, Xiao Y, Che R, Xu F, Hu B, Liang C, Chu J, Li J, Chu C (2015) Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice. Proceedings of the National Academy of Sciences of the United States of America 112, 11102–11107.
Mackill DJ, Pinson SRM, Rutger JN (1991) Frizzy panicle, an EMS-induced mutant in the Japonica cultivar M-201. Rice Genetics Newsletter 9, 100–102.
Mao H, Sun S, Yao J, Wang C, Yu S, Xu C, Li X, Zhang Q (2010) Linking differential domain functions of the GS3 protein to natural variation of grain size in rice. Proceedings of the National Academy of Sciences of the United States of America 107, 19579–19584.
| Linking differential domain functions of the GS3 protein to natural variation of grain size in rice.Crossref | GoogleScholarGoogle Scholar | 20974950PubMed |
Miura K, Ikeda M, Matsubara A, Song X-J, Ito M, Asano K, Matsuoka M, Kitano H, Ashikari M (2010) OsSPL14 promotes panicle branching and higher grain productivity in rice. Nature Genetics 42, 545–549.
| OsSPL14 promotes panicle branching and higher grain productivity in rice.Crossref | GoogleScholarGoogle Scholar | 20495564PubMed |
Mohapatra PK, Patel R, Sahu K (1993) Time of flowering affects grain quality and spikelet partitioning withing rice panicle. Aust J Plant Physiol 20, 231–241.
Mok DWS, Mok MC (2001) Cytokinin metabolism and action. Annual Review of Plant Physiology and Plant Molecular Biology 52, 89–118.
| Cytokinin metabolism and action.Crossref | GoogleScholarGoogle Scholar |
Nagata K, Fukuta Y, Shimizu H, Yagi T, Terao T (2002) Quantitative trait loci for sink size and ripening traits in rice (Oryza sativa L.). Breeding Science 52, 259–273.
| Quantitative trait loci for sink size and ripening traits in rice (Oryza sativa L.).Crossref | GoogleScholarGoogle Scholar |
Nakagawa M, Shimamoto K, Kyozuka J (2002) Overexpression of RCN1 and RCN2, rice TERMINAL FLOWER 1/CENTRORADIALIS homologs, confers delay of phase transition and altered panicle morphology in rice. The Plant Journal 29, 743–750.
| Overexpression of RCN1 and RCN2, rice TERMINAL FLOWER 1/CENTRORADIALIS homologs, confers delay of phase transition and altered panicle morphology in rice.Crossref | GoogleScholarGoogle Scholar | 12148532PubMed |
OECD/FAO (2020) Table C.1-World cereal projections. In ‘OECD-FAO Agricultural Outlook 2020-2029’. (OECD Publishing: Paris)
| Crossref |
Ohshima S, Murata M, Sakamoto W, Ogura Y, Motoyoshi F (1997) Cloning and molecular analysis of the Arabidopsis gene Terminal Flower 1. Molecular and General Genetics 254, 186–194.
| Cloning and molecular analysis of the Arabidopsis gene Terminal Flower 1.Crossref | GoogleScholarGoogle Scholar | 9108281PubMed |
Okada S, Sasaki M, Yamasaki M (2018) A novel rice QTL qOPW11 associated with panicle weight affects panicle and plant architecture. Rice 11, 53
| A novel rice QTL qOPW11 associated with panicle weight affects panicle and plant architecture.Crossref | GoogleScholarGoogle Scholar | 30225538PubMed |
Okamura M, Arai-Sanoha Y, Yoshidab H, Mukouyama T, Adachi S, Yabe S, Nakagawa H, Tsutsumi K, Taniguchi Y, Kobayashi N, Kondo M (2018) Characterization of high-yielding rice cultivars with different grain filling properties to clarify limiting factors for improving grain yield. Field Crops Research 219, 139–147.
| Characterization of high-yielding rice cultivars with different grain filling properties to clarify limiting factors for improving grain yield.Crossref | GoogleScholarGoogle Scholar |
Panda BB, Badoghar AK, Das K, Panigrahi R, Kariali E, Das SR, Dash SK, Shaw BP, Mohapatra PK (2015) Compact panicle architecture is detrimental for growth as well as sucrose synthase activity of developing rice kernels. Functional Plant Biology 42, 875–887.
| Compact panicle architecture is detrimental for growth as well as sucrose synthase activity of developing rice kernels.Crossref | GoogleScholarGoogle Scholar | 32480730PubMed |
Panda BB, Badoghar AK, Sekhar S, Shaw BP, Mohapatra PK (2016) 1-MCP treatment enhanced expression of genes controlling endosperm cell division and starch biosynthesis for improvement of grain filling in a dense-panicle rice cultivar. Plant Science 246, 11–25.
| 1-MCP treatment enhanced expression of genes controlling endosperm cell division and starch biosynthesis for improvement of grain filling in a dense-panicle rice cultivar.Crossref | GoogleScholarGoogle Scholar | 26993232PubMed |
Panda BB, Sekhar S, Dash SK, Behera L, Shaw BP (2018) Biochemical and molecular characterisation of exogenous cytokinin application on grain filling in rice. BMC Plant Biology 18, 89
| Biochemical and molecular characterisation of exogenous cytokinin application on grain filling in rice.Crossref | GoogleScholarGoogle Scholar | 29783938PubMed |
Peng S, Cassman KG, Virmani SS, Sheehy J, Khush GS (1999) Yield potential trends of tropical since the release of IR8 and the challenge of increasing rice yield potential. Crop Science 39, 1552–1559.
| Yield potential trends of tropical since the release of IR8 and the challenge of increasing rice yield potential.Crossref | GoogleScholarGoogle Scholar |
Peng S, Khush G (2003) Four decades of breeding for varietal improvement of irrigated lowland rice in the International Rice Research Institute. Plant Production Science 6, 157–164.
| Four decades of breeding for varietal improvement of irrigated lowland rice in the International Rice Research Institute.Crossref | GoogleScholarGoogle Scholar |
Peng S, Laza RC, Visperas RM, Khush GS, Virk P, Zhu D (2004) Rice: progress in breaking the yield ceiling. In ‘New direction for a diverse planet. Proceedings of the 4th international crop science congress, 26 September 2004–1 October 2004. Brisbane, Australia’.
Peng S, Khush GS, Virk P, Tang Q, Zou Y (2008) Progress in ideotype breeding to increase rice yield potential. Field Crops Research 108, 32–38.
| Progress in ideotype breeding to increase rice yield potential.Crossref | GoogleScholarGoogle Scholar |
Piao R, Jiang W, Ham T-H, Choi M-S, Qiao Y, Chu S-H, Park J-H, Woo M-O, Jin Z, An G, Lee J, Koh H-J (2009) Map-based cloning of the ERECT PANICLE 3 gene in rice. Theoretical and Applied Genetics 119, 1497–1506.
| Map-based cloning of the ERECT PANICLE 3 gene in rice.Crossref | GoogleScholarGoogle Scholar | 19756471PubMed |
Qi J, Qian Q, Bu Q, Li S, Chen Q, Sun J, Liang W, Zhou Y, Chu C, Li X, Ren F, Palme K, Zhao B, Chen J, Chen M, Li C (2008) Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport. Plant Physiology 147, 1947–1959.
| Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport.Crossref | GoogleScholarGoogle Scholar | 18562767PubMed |
Qi P, Lin Y-S, Song X-J, Shen J-B, Huang W, Shan J-X, Zhu M-Z, Jiang L, Gao J-P, Lin H-X (2012) The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3. Cell Research 22, 1666–1680.
| The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3.Crossref | GoogleScholarGoogle Scholar | 23147796PubMed |
Sahu G, Panda BB, Dash SK, Chandra T, Shaw BP (2021) Cell cycle events and expression of cell cycle regulators are determining factors in differential grain filling in rice spikelets based on their spatial location on compact panicles. Functional Plant Biology 48, 268–285.
| Cell cycle events and expression of cell cycle regulators are determining factors in differential grain filling in rice spikelets based on their spatial location on compact panicles.Crossref | GoogleScholarGoogle Scholar | 33120000PubMed |
Sekhar S, Gharat SA, Panda BB, Mohapatra T, Das K, Kariali E, Mohapatra PK, Shaw BP (2015b) Identification and characterization of differentially expressed genes in inferior and superior spikelets of rice cultivars with contrasting panicle-compactness and grain-filling properties. PLoS ONE 10, e0145749
| Identification and characterization of differentially expressed genes in inferior and superior spikelets of rice cultivars with contrasting panicle-compactness and grain-filling properties.Crossref | GoogleScholarGoogle Scholar | 26710230PubMed |
Sekhar S, Panda BB, Mohapatra T, Das K, Shaw BP, Kariali E, Mohapatra PK (2015a) Spikelet-specific variation in ethylene production and constitutive expression of ethylene receptors and signal transducers during grain filling of compact- and lax-panicle rice (Oryza sativa) cultivars. Journal of Plant Physiology 179, 21–34.
| Spikelet-specific variation in ethylene production and constitutive expression of ethylene receptors and signal transducers during grain filling of compact- and lax-panicle rice (Oryza sativa) cultivars.Crossref | GoogleScholarGoogle Scholar | 25817414PubMed |
Shahbandeh M (2021) World production volume of milled rice from 2008/2009 to 2019/2020. Available at https://www.statista.com/statistics/271972/world-husked-rice-production-volume-since-2008/(2021).
Sheehy JE, Dionora MJA, Mitchell PL (2001) Spikelet numbers, sink size and potential yield in rice. Field Crop Research 71, 77–85.
| Spikelet numbers, sink size and potential yield in rice.Crossref | GoogleScholarGoogle Scholar |
Shomura A, Izawa T, Ebana K, Ebitani T, Kanegae H, Konishi S, Yano M (2008) Deletion in a gene associated with grain size increased yields during rice domestication. Nature Genetics 40, 1023–1028.
| Deletion in a gene associated with grain size increased yields during rice domestication.Crossref | GoogleScholarGoogle Scholar | 18604208PubMed |
Song XJ, Huang W, Shi M, Zhu MZ, Lin HX (2007) A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nature Genetics 39, 623–630.
| A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase.Crossref | GoogleScholarGoogle Scholar | 17417637PubMed |
Ta KN, Khong NG, Ha TL, Nguyen DT, Mai DC, Hoang TG, Phung TPN, Bourrie I, Courtois B, Tran TTH, Dinh BY, La TN, Do NV, Lebrun M, Gantet P, Jouannic S (2018) A genome-wide association study using a Vietnamese landrace panel of rice (Oryza sativa) reveals new QTLs controlling panicle morphological traits. BMC Plant Biology 18, 282
| A genome-wide association study using a Vietnamese landrace panel of rice (Oryza sativa) reveals new QTLs controlling panicle morphological traits.Crossref | GoogleScholarGoogle Scholar | 30428844PubMed |
Vergara BS, Chang TT (1985) ‘The flowering response of the rice plant to photoperiod.’ (The International Rice Research Institute: Laos Banos)
Virk PS, Khush GS (2003) New plant type in rice. In ‘Proceedings of the national symposium on priorities and strategies for rice research in high-rainfall tropics, 10–11 October 2002’. pp. 7–16. (Pattambi, India)
Virk PS, Khush GS, Peng S (2004) Breeding to enhance yield potential of rice at IRRI: the ideotype approach. International Rice Research Notes 29, 5–9.
Wang X, Tao L, Yu M, Huang X (2002) Physiological characteristics of “super” hybrid rice variety, Xieyou9308. Chinese Journal of Rice Science 16, 38–44.
Wang S, Wu K, Yuan Q, Liu X, Liu Z, Lin X, Zeng R, Zhu H, Dong G, Qian Q, Zhang G, Fu X (2012) Control of grain size, shape and quality by OsSPL16 in rice. Nature Genetics 44, 950–954.
| Control of grain size, shape and quality by OsSPL16 in rice.Crossref | GoogleScholarGoogle Scholar | 22729225PubMed |
Weng J, Gu S, Wan X, Gao H, Guo T, Su N, Lei C, Zhang X, Cheng Z, Guo X, Wang J, Jiang L, Zhai H, Wan J (2008) Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight. Cell Research 18, 1199–1209.
| Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight.Crossref | GoogleScholarGoogle Scholar | 19015668PubMed |
Xing Y, Zhang Q (2010) Genetic and molecular bases of rice yield. Annual Review of Plant Biology 61, 421–442.
| Genetic and molecular bases of rice yield.Crossref | GoogleScholarGoogle Scholar | 20192739PubMed |
Xu ZJ, Chen WF, Zhang LB, Yang SR (1990) Comparative study on light distribution in rice canopies with different panicle types. Scientia Agriccultura Sinica 23, 6–10.
Yagi T, Nagata K, Fukuta Y, Tamura K, Ashikawa I, Terao T (2001) QTL mapping of spikelet number in rice (Oryza sativa L.). Breeding Science 51, 53–56.
| QTL mapping of spikelet number in rice (Oryza sativa L.).Crossref | GoogleScholarGoogle Scholar |
Yang J, Zhang J (2010) Grain-filling problem in ‘super’ rice. Journal of Experimental Botany 61, 1–5.
| Grain-filling problem in ‘super’ rice.Crossref | GoogleScholarGoogle Scholar | 19959608PubMed |
Yang J, Zhang J, Wang Z, Liu K, Wang P (2006) Post-anthesis development of inferior and superior spikelets in rice in relation to abscisic acid and ethylene. Journal of Experimental Botany 57, 149–160.
| Post-anthesis development of inferior and superior spikelets in rice in relation to abscisic acid and ethylene.Crossref | GoogleScholarGoogle Scholar | 16330527PubMed |
Yang W, Peng S, Laza RC, Visperas RM, Dionisio-Sese ML (2007) Grain yield and yield attributes of new plant type and hybrid rice. Crop Science 47, 1393–1400.
| Grain yield and yield attributes of new plant type and hybrid rice.Crossref | GoogleScholarGoogle Scholar |
Yoshinaga S, Takai T, Arai-Sanoh Y, Ishimaru T, Kondo M (2013) Varietal differences in sink production and grain-filling ability in recently developed high-yielding rice (Oryza sativa L.) varieties in Japan. Field Crops Research 150, 74–82.
| Varietal differences in sink production and grain-filling ability in recently developed high-yielding rice (Oryza sativa L.) varieties in Japan.Crossref | GoogleScholarGoogle Scholar |
You C, Zhu H, Xu B, Huang W, Wang S, Ding Y, Liu Z, Li G, Chen L, Ding C, Tang S (2016) Effect of removing superior spikelets on grain filling of inferior spikelets in rice. Frontiers in Plant Science 7, 1161
| Effect of removing superior spikelets on grain filling of inferior spikelets in rice.Crossref | GoogleScholarGoogle Scholar | 27547210PubMed |
Zhang X, Wang J, Huang J, Lan H, Wang C, Yin C, Wu Y, Tang H, Qian Q, Li J, Zhang H (2012) Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice. Proceedings of the National Academy of Sciences of the United States of America 109, 21534–21539.
| Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice.Crossref | GoogleScholarGoogle Scholar | 23236132PubMed |
Zhou J, Xu Y, Xu P, Deng X, Hu F, Li J, Ren G, Tao D (2008) Introgression and mapping of erect panicle gene from Oryza glaberrima in to Oryza sativa. Rice Genetics Newsletter 24, 18–21.
Zhou Y, Zhu J, Li Z, Yi C, Liu J, Zhang H, Tang S, Gu M, Liang G (2009) Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication. Genetics 183, 315–324.
| Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication.Crossref | GoogleScholarGoogle Scholar | 19546322PubMed |
Zhu D, Lin X, Chen W, Sun Y, Lu W, Duan B, Zhang Y (2002) Nutritional characteristics and fertilizer management strategies for “super” rice variety, Xieyou9308. China Rice 2, 18–19.
Zhu K, Tang D, Yan C, Chi Z, Yu H, Chen J, Liang J, Gu M, Cheng Z (2010) ERECT PANICLE2 encodes a novel protein that regulates panicle erectness in indica rice. Genetics 184, 343–350.
| ERECT PANICLE2 encodes a novel protein that regulates panicle erectness in indica rice.Crossref | GoogleScholarGoogle Scholar | 19933874PubMed |