Physiological characterisation and fine mapping of a salt-tolerant mutant in rice (Oryza sativa)
Ping Deng A , Dan Jiang A , Yanmin Dong A , Xingyu Shi A , Wen Jing A B and Wenhua Zhang AA College of Life Sciences, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China.
B Corresponding author. Email: jingwen@njau.edu.cn
Functional Plant Biology 42(11) 1026-1035 https://doi.org/10.1071/FP15126
Submitted: 11 May 2015 Accepted: 29 July 2015 Published: 2 September 2015
Abstract
Salt-tolerant mutants are valuable resources for basic and applied research on plant salt tolerance. Here, we report the isolation and characterisation of a salt-tolerant rice (Oryza sativa L.) mutant. This mutant was identified from an ethyl methanesulfonate-induced Nipponbare mutant library, designated as rice salt tolerant 1 (rst1). The rst1 mutant was tolerant to salt stress and showed significantly higher shoot biomass and chlorophyll content, but lower lipid peroxidation and electrolyte leakage under NaCl stress. The improved salt tolerance of this mutant may be due mainly to its enhanced ability to restrict Na+ accumulation in shoots under salt stress conditions. Genetic analysis indicated that the salt tolerance of the rst1 mutant was controlled by a single recessive gene. Quantitative trait locus (QTL) mapping for salt tolerance was performed using an F2 population of rst1 × Peiai 64. Two QTLs were detected, in which the locus on chromosome 6 was determined to be the candidate locus of the rst1 gene. The rst1 locus was subsequently shown to reside within a 270.4-kb region defined by the markers IM29432 and IM29702. This result will be useful for map-based cloning of the rst1 gene and for marker-assisted breeding for salt tolerance in rice.
Additional keywords: markers, mutation, quantitative trait loci, salt stress, salinity.
References
Ammar M, Pandit A, Singh R, Sameena S, Chauhan M, Singh A, Sharma P, Gaikwad K, Sharma T, Mohapatra T, Singh N (2009) Mapping of QTLs controlling Na+, K+ and Cl− ion concentrations in salt tolerant indica rice variety CSR27. Journal of Plant Biochemistry and Biotechnology 18, 139–150.| Mapping of QTLs controlling Na+, K+ and Cl− ion concentrations in salt tolerant indica rice variety CSR27.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXht1WqsrzI&md5=aac3e409fee2c0d8fd55bdf83c78e2d0CAS |
Ashokkumar K, Raveendran M, Senthil N, Vijayalaxmi D, Sowmya M, Sharma R, Robin S (2013) Isolation and characterization of altered root growth behavior and salinity tolerant mutants in rice. African Journal of Biotechnology 12, 5852–5859.
Baloch AW, Soomro AM, Javed MA, Bughio H-u-R, Alam SM, Bughio MS, Mohammed T, Mastoi N-u-N (2003) Induction of salt tolerance in rice through mutation breeding. Asian Journal of Plant Science 2, 273–276.
| Induction of salt tolerance in rice through mutation breeding.Crossref | GoogleScholarGoogle Scholar |
Berthomieu P, Conéjéro G, Nublat A, Brackenbury WJ, Lambert C, Savio C, Uozumi N, Oiki S, Yamada K, Cellier F, Gosti F, Simonneau T, Essah PA, Tester M, Véry AA, Sentenac H, Casse F (2003) Functional analysis of AtHKT1 in Arabidopsis shows that Na+ recirculation by the phloem is crucial for salt tolerance. The EMBO Journal 22, 2004–2014.
| Functional analysis of AtHKT1 in Arabidopsis shows that Na+ recirculation by the phloem is crucial for salt tolerance.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3sXjsVKmu70%3D&md5=ff1b41649328cf816894aa7b9a1e652eCAS | 12727868PubMed |
Cheng L, Wang Y, Meng L, Hu X, Cui Y, Sun Y, Zhu L, Ali J, Xu J, Li Z (2012) Identification of salt-tolerant QTLs with strong genetic background effect using two sets of reciprocal introgression lines in rice. Genome 55, 45–55.
| Identification of salt-tolerant QTLs with strong genetic background effect using two sets of reciprocal introgression lines in rice.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XnvV2lsb4%3D&md5=ac6db6f207d32345a0859d282c99e6bdCAS | 22181322PubMed |
Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138, 963–971.
Deng P, Shi X, Zhou J, Wang F, Dong Y, Jing W, Zhang W (2015) Identification and fine mapping of a mutation conferring salt-sensitivity in rice (Oryza sativa L.). Crop Science 55, 219–228.
| Identification and fine mapping of a mutation conferring salt-sensitivity in rice (Oryza sativa L.).Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC2MXntFyjtQ%3D%3D&md5=c4d876db0425525374dd57f64209bf98CAS |
Ghaffari A, Gharechahi J, Nakhoda B, Salekdeh GH (2014) Physiology and proteome responses of two contrasting rice mutants and their wild type parent under salt stress conditions at the vegetative stage. Journal of Plant Physiology 171, 31–44.
| Physiology and proteome responses of two contrasting rice mutants and their wild type parent under salt stress conditions at the vegetative stage.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3sXhsFOgtrfF&md5=0497003ae6b4082774f3b27fa1610a22CAS | 24094368PubMed |
Gill SS, Tuteja N (2010) Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants. Plant Physiology and Biochemistry 48, 909–930.
| Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3cXhtlKnu7fF&md5=d8466bc1f0ea5a1d21bd608636a35002CAS | 20870416PubMed |
Gregorio G, Senadhira D, Mendoza R, Manigbas N, Roxas J, Guerta C (2002) Progress in breeding for salinity tolerance and associated abiotic stresses in rice. Field Crops Research 76, 91–101.
| Progress in breeding for salinity tolerance and associated abiotic stresses in rice.Crossref | GoogleScholarGoogle Scholar |
Heath RL, Packer L (1968) Photoperoxidation in isolated chloroplasts: I. Kinetics and stoichiometry of fatty acid peroxidation. Archives of Biochemistry and Biophysics 125, 189–198.
| Photoperoxidation in isolated chloroplasts: I. Kinetics and stoichiometry of fatty acid peroxidation.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaF1cXhtFWgtLw%3D&md5=2ab91884d83e3a0144fd58ea4d7abf44CAS | 5655425PubMed |
Huang X, Chao D, Gao J, Zhu M, Shi M, Lin H (2009) A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control. Genes & Development 23, 1805–1817.
| A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1MXps1ymtLo%3D&md5=430d246419123fc549a30fcc2207dbedCAS |
Ismail AM, Heuer S, Thomson MJ, Wissuwa M (2007) Genetic and genomic approaches to develop rice germplasm for problem soils. Plant Molecular Biology 65, 547–570.
| Genetic and genomic approaches to develop rice germplasm for problem soils.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2sXhtF2itbfF&md5=7f34a66534cc6001c30b7102326b674dCAS | 17703278PubMed |
Jing W, Zhang W, Jiang L, Chen L, Zhai H, Wan J (2007) Two novel loci for pollen sterility in hybrids between the weedy strain Ludao and the Japonica variety Akihikari of rice (Oryza sativa L.). Theoretical and Applied Genetics 114, 915–925.
| Two novel loci for pollen sterility in hybrids between the weedy strain Ludao and the Japonica variety Akihikari of rice (Oryza sativa L.).Crossref | GoogleScholarGoogle Scholar | 17287976PubMed |
Kosambi D (1943) The estimation of map distances from recombination values. Annals of Eugenics 12, 172–175.
| The estimation of map distances from recombination values.Crossref | GoogleScholarGoogle Scholar |
Koyama ML, Levesley A, Koebner RM, Flowers TJ, Yeo AR (2001) Quantitative trait loci for component physiological traits determining salt tolerance in rice. Plant Physiology 125, 406–422.
| Quantitative trait loci for component physiological traits determining salt tolerance in rice.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3MXjslyls70%3D&md5=cabc8e43bfa1a7798619390e20f35fdcCAS | 11154348PubMed |
Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1, 174–181.
| MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaL1cXhsVCksrk%3D&md5=a95baf6fab25982b8efc82c3d9743e6fCAS | 3692487PubMed |
Lee IS, Kim DS, Lee SJ, Song HS, Lim YP, Lee YI (2003) Selection and characterizations of radiation-induced salinity-tolerant lines in rice. Breeding Science 53, 313–318.
| Selection and characterizations of radiation-induced salinity-tolerant lines in rice.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2cXhtleku7g%3D&md5=4cca181d47133a9f04029c72aa666dbaCAS |
Lichtenthaler H (1987) Chlorophyls and carotenoids: pigments of photosynthetic biomembranes. Methods in Enzymology 148, 350–382.
| Chlorophyls and carotenoids: pigments of photosynthetic biomembranes.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaL1cXhs1Cgu78%3D&md5=10db2f7d7e0da88078567de9678c836cCAS |
Lin H, Zhu M, Yano M, Gao J, Liang Z, Su W, Hu X, Ren Z, Chao D (2004) QTLs for Na+ and K+ uptake of the shoots and roots controlling rice salt tolerance. Theoretical and Applied Genetics 108, 253–260.
| QTLs for Na+ and K+ uptake of the shoots and roots controlling rice salt tolerance.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2cXjtFCntg%3D%3D&md5=5e23d75f7f6a00497d9ac0c0a26606f5CAS | 14513218PubMed |
Liu J, Zhu J-K (1998) A calcium sensor homolog required for plant salt tolerance. Science 280, 1943–1945.
| A calcium sensor homolog required for plant salt tolerance.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK1cXjvF2jsb4%3D&md5=679f340c3d4155b9356cad6620c916d3CAS | 9632394PubMed |
Liu J, Ishitani M, Halfter U, Kim C-S, Zhu J-K (2000) The Arabidopsis thaliana SOS2 gene encodes a protein kinase that is required for salt tolerance. Proceedings of the National Academy of Sciences of the United States of America 97, 3730–3734.
| The Arabidopsis thaliana SOS2 gene encodes a protein kinase that is required for salt tolerance.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXitlajsrs%3D&md5=7c9229dc7dc6a3d2b5f07c607f84e041CAS | 10725382PubMed |
Mba C, Afza R, Jain SM, Gregorio GB, Zapata-Arias FJ (2007) Induced mutations for enhancing salinity tolerance in rice. In ‘Advances in molecular breeding toward drought and salt tolerant crops’. (Eds MA Jenks, PM Hasegawa, SM Jain) pp. 413–454. (Springer Publishing: Netherlands)
Meloni DA, Oliva MA, Martinez CA, Cambraia J (2003) Photosynthesis and activity of superoxide dismutase, peroxidase and glutathione reductase in cotton under salt stress. Environmental and Experimental Botany 49, 69–76.
| Photosynthesis and activity of superoxide dismutase, peroxidase and glutathione reductase in cotton under salt stress.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD38XpsFars7Y%3D&md5=1af17531c00a4683610a37fa1a8352a9CAS |
Munns R, Tester M (2008) Mechanisms of salinity tolerance. Annual Review of Plant Biology 59, 651–681.
| Mechanisms of salinity tolerance.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD1cXntFaqtrw%3D&md5=e2ba555e0946a244ab5e98e4f2e7cc4dCAS | 18444910PubMed |
Nakhoda B, Leung H, Mendioro MS, Mohammadi-nejad G, Ismail AM (2012) Isolation, characterization, and field evaluation of rice (Oryza sativa L., var. IR64) mutants with altered responses to salt stress. Field Crops Research 127, 191–202.
| Isolation, characterization, and field evaluation of rice (Oryza sativa L., var. IR64) mutants with altered responses to salt stress.Crossref | GoogleScholarGoogle Scholar |
Pandit A, Rai V, Bal S, Sinha S, Kumar V, Chauhan M, Gautam RK, Singh R, Sharma PC, Singh AK, Gaikwad K, Sharma TR, Mohapatra T, Singh NK (2010) Combining QTL mapping and transcriptome profiling of bulked RILs for identification of functional polymorphism for salt tolerance genes in rice (Oryza sativa L.). Molecular Genetics and Genomics 284, 121–136.
| Combining QTL mapping and transcriptome profiling of bulked RILs for identification of functional polymorphism for salt tolerance genes in rice (Oryza sativa L.).Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3cXoslait7c%3D&md5=76e04370393605ecdb217ac9693f4c6dCAS | 20602115PubMed |
Ren Z, Gao J, Li L, Cai X, Huang W, Chao D, Zhu M, Wang Z, Luan S, Lin H (2005) A rice quantitative trait locus for salt tolerance encodes a sodium transporter. Nature Genetics 37, 1141–1146.
| A rice quantitative trait locus for salt tolerance encodes a sodium transporter.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2MXhtVCntL%2FJ&md5=dddd2cb1a3681cb51d2aa6088c233e11CAS | 16155566PubMed |
Sabouri H, Rezai A, Moumeni A, Kavousi A, Katouzi M, Sabouri A (2009) QTLs mapping of physiological traits related to salt tolerance in young rice seedlings. Biologia Plantarum 53, 657–662.
| QTLs mapping of physiological traits related to salt tolerance in young rice seedlings.Crossref | GoogleScholarGoogle Scholar |
Sairam R, Srivastava G, Agarwal S, Meena R (2005) Differences in antioxidant activity in response to salinity stress in tolerant and susceptible wheat genotypes. Biologia Plantarum 49, 85–91.
| Differences in antioxidant activity in response to salinity stress in tolerant and susceptible wheat genotypes.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD2MXlslKhs78%3D&md5=e24927bc33d81e0b4f8655e8a339875bCAS |
Shi H, Ishitani M, Kim C, Zhu J-K (2000) The Arabidopsis thaliana salt tolerance gene SOS1 encodes a putative Na+/H+ antiporter. Proceedings of the National Academy of Sciences of the United States of America 97, 6896–6901.
| The Arabidopsis thaliana salt tolerance gene SOS1 encodes a putative Na+/H+ antiporter.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3cXktFahtrs%3D&md5=5e7a50a78f4273f08e943c84419aacf2CAS | 10823923PubMed |
Shi H, Quintero FJ, Pardo JM, Zhu J-K (2002a) The putative plasma membrane Na+/H+ antiporter SOS1 controls long-distance Na+ transport in plants. The Plant Cell 14, 465–477.
| The putative plasma membrane Na+/H+ antiporter SOS1 controls long-distance Na+ transport in plants.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD38XisVKgur0%3D&md5=603a4b0349131da469e735c06336a1d7CAS | 11884687PubMed |
Shi H, Xiong L, Stevenson B, Lu T, Zhu J-K (2002b) The Arabidopsis salt overly sensitive 4 mutants uncover a critical role for vitamin B6 in plant salt tolerance. The Plant Cell 14, 575–588.
| The Arabidopsis salt overly sensitive 4 mutants uncover a critical role for vitamin B6 in plant salt tolerance.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD38XivVegt7k%3D&md5=f12b68e55f1a7f7d36e82e9c6947e584CAS | 11910005PubMed |
Shi H, Kim Y, Guo Y, Stevenson B, Zhu J-K (2003) The Arabidopsis SOS5 locus encodes a putative cell surface adhesion protein and is required for normal cell expansion. The Plant Cell 15, 19–32.
| The Arabidopsis SOS5 locus encodes a putative cell surface adhesion protein and is required for normal cell expansion.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3sXmtFensw%3D%3D&md5=891c3064ab56249842f4da1476c40ff9CAS | 12509519PubMed |
Thomson MJ, de Ocampo M, Egdane J, Rahman MA, Sajise AG, Adorada DL, Tumimbang-Raiz E, Blumwald E, Seraj ZI, Singh RK, Gregorio GB, Ismail AM (2010) Characterizing the Saltol quantitative trait locus for salinity tolerance in rice. Rice (New York, N.Y.) 3, 148–160.
| Characterizing the Saltol quantitative trait locus for salinity tolerance in rice.Crossref | GoogleScholarGoogle Scholar |
Tian L, Tan L, Liu F, Cai H, Sun C (2011) Identification of quantitative trait loci associated with salt tolerance at seedling stage from Oryza rufipogon. Journal of Genetics and Genomics 38, 593–601.
| Identification of quantitative trait loci associated with salt tolerance at seedling stage from Oryza rufipogon.Crossref | GoogleScholarGoogle Scholar | 22196402PubMed |
Wang S, Basten C, Zeng Z (2007) Windows QTL cartographer 2.5. (Department of Statistics, North Carolina State University, Raleigh, NC)
Wang Z, Chen Z, Cheng J, Lai Y, Wang J, Bao Y, Huang J, Zhang H (2012a) QTL analysis of Na+ and K+ concentrations in roots and shoots under different levels of NaCl stress in rice (Oryza sativa L.). PLoS One 7, e51202
| QTL analysis of Na+ and K+ concentrations in roots and shoots under different levels of NaCl stress in rice (Oryza sativa L.).Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XhvV2js7fF&md5=c69f5d8e034582679d5ed08d5a769165CAS | 23236455PubMed |
Wang Z, Cheng J, Chen Z, Huang J, Bao Y, Wang J, Zhang H (2012b) Identification of QTLs with main, epistatic and QTL × environment interaction effects for salt tolerance in rice seedlings under different salinity conditions. Theoretical and Applied Genetics 125, 807–815.
| Identification of QTLs with main, epistatic and QTL × environment interaction effects for salt tolerance in rice seedlings under different salinity conditions.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC38XhtFWhsb7N&md5=117f442f1304d908a77bf126e3e0eeceCAS | 22678666PubMed |
Wu S-J, Ding L, Zhu J-K (1996) SOS1, a genetic locus essential for salt tolerance and potassium acquisition. The Plant Cell 8, 617–627.
| SOS1, a genetic locus essential for salt tolerance and potassium acquisition.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DyaK28Xis1Grtr0%3D&md5=3f9572ffaf8334b77fcfdac512578122CAS | 12239394PubMed |
Yan J, Wang J, Li Q, Hwang JR, Patterson C, Zhang H (2003) AtCHIP, a U-box-containing E3 ubiquitin ligase, plays a critical role in temperature stress tolerance in Arabidopsis. Plant Physiology 132, 861–869.
| AtCHIP, a U-box-containing E3 ubiquitin ligase, plays a critical role in temperature stress tolerance in Arabidopsis.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD3sXkslertLw%3D&md5=b62cd2491c32fb045917f33f58ec2411CAS | 12805616PubMed |
Yeo A, Yeo M, Flowers S, Flowers T (1990) Screening of rice (Oryza sativa L.) genotypes for physiological characters contributing to salinity resistance, and their relationship to overall performance. Theoretical and Applied Genetics 79, 377–384.
| Screening of rice (Oryza sativa L.) genotypes for physiological characters contributing to salinity resistance, and their relationship to overall performance.Crossref | GoogleScholarGoogle Scholar | 1:STN:280:DC%2BC2c7mt1Whug%3D%3D&md5=a016d46b14b344e6dfc28e9233c4a2ddCAS | 24226357PubMed |
Yoshida S, Forno DA, Cock JH, Gomez KA (1976) ‘Laboratory manual for physiological studies of rice.’ 3rd edn. (Internaltional Rice Research Institute: Manila)
Zhou J, Wang F, Deng P, Jing W, Zhang W (2013) Characterization and mapping of a salt‐sensitive mutant in rice (Oryza sativa L.). Journal of Integrative Plant Biology 55, 504–513.
| Characterization and mapping of a salt‐sensitive mutant in rice (Oryza sativa L.).Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3sXhtVGltr%2FJ&md5=68356962bda8cc0260205f4f5a3daad5CAS | 23480486PubMed |