Free Standard AU & NZ Shipping For All Book Orders Over $80!
Register      Login
Wildlife Research Wildlife Research Society
Ecology, management and conservation in natural and modified habitats
RESEARCH ARTICLE

Modelling the rate of successful search of red foxes during population control

Tom A. Porteus https://orcid.org/0000-0003-0666-2593 A D E , Jonathan C. Reynolds B and Murdoch K. McAllister C
+ Author Affiliations
- Author Affiliations

A Department of Zoology, University of British Columbia, 6270 University Boulevard, Vancouver, BC, V6T 1Z4, Canada.

B Game & Wildlife Conservation Trust, Burgate Manor, Fordingbridge, SP6 1EF, UK.

C Institute for the Oceans and Fisheries, University of British Columbia, AERL, 2202 Main Mall, Vancouver, BC, V6T 1Z4, Canada.

D Present address: Game & Wildlife Conservation Trust, Burgate Manor, Fordingbridge, SP6 1EF, UK.

E Corresponding author. Email: tporteus@gwct.org.uk

Wildlife Research 46(4) 285-295 https://doi.org/10.1071/WR18025
Submitted: 2 March 2017  Accepted: 18 February 2019   Published: 3 May 2019

Abstract

Context: Relative abundance indices of wildlife can be scaled to give estimates of absolute abundance. Choice of scaling parameter depends on the data available and assumptions made about the relationship between the index and absolute abundance. Predation-mechanics theory suggests that a parameterisation involving the rate of successful search, s, will be useful where the area searched is unknown. An example arises during fox culling on shooting estates in Britain, where detection and cull data from gamekeepers using a spotlight and rifle are available, and can potentially be used to understand the population dynamics of the local population.

Aims: We aimed to develop an informative prior for s for use within a Bayesian framework to fit a fox population-dynamics model to detection data.

Methods: We developed a mechanistic model with a rate of successful search parameter for the gamekeeper–fox system. We established a mechanistic prior for s, using Monte Carlo simulation to combine relevant information on its component factors (detection probability, observer field of view and speed of travel). We obtained empirical estimates of s from a distance-sampling study of fox populations using similar survey methods, and used these as data in a Bayesian model to develop a mechanistic–empirical prior. We then applied this informative prior within a state–space model to estimate fox density from fox-detection rate on four estates.

Key results: The mechanistic–empirical prior for the rate of successful search was lognormally distributed with a median of 2.01 km2 h–1 (CV = 0.56). Underlying assumptions of the parameterisation were met. Local fox-density estimates obtained using informative priors closely reflected regional density.

Conclusions: A mechanistic understanding of the search process leading to fox detections by gamekeepers, and the use of Bayesian models, allowed the use of diverse sources of information to develop an informative prior for s that was useful in estimating fox density from detection data.

Implications: Careful use of prior knowledge within a Bayesian modelling framework can reduce uncertainty in population estimates derived from index data, and lead to improved management decisions. The mechanistic approach we have used will have parallel applications in many other contexts.

Additional keywords: Bayesian state-space model, informative prior, predation mechanics, relative abundance index, searching efficiency.


References

Amundson, C. L., Royle, J. A., and Handel, C. M. (2014). A hierarchical model combining distance sampling and time removal to estimate detection probability during avian point counts. The Auk 131, 476–494.
A hierarchical model combining distance sampling and time removal to estimate detection probability during avian point counts.Crossref | GoogleScholarGoogle Scholar |

Arreguín-Sánchez, F. (1996). Catchability: a key parameter for fish stock assessment. Reviews in Fish Biology and Fisheries 6, 221–242.
Catchability: a key parameter for fish stock assessment.Crossref | GoogleScholarGoogle Scholar |

Battersby, J. (2005). ‘UK Mammals: Species Status and Population Trends. Tracking Mammals Partnership No. 1.’ (JNCC/Tracking Mammals Partnership: Peterborough, UK.)

Buckland, S. T., Anderson, D. R., Burnham, K. P., Laake, J. L., Borchers, D. L., and Thomas, L. (2001). ‘Introduction to Distance Sampling: Estimating Abundance of Biological Populations.’ (Oxford University Press: Oxford, UK.)

Bucknell, R. (2001). ‘Foxing with Lamp and Rifle.’ (Foxearth Publishing: Chelmsford, UK.)

Case, T. J. (2000). ‘An Illustrated Guide to Theoretical Ecology.’ (Oxford University Press: Oxford, UK.)

Caughley, G. (1977). ‘Analysis of Vertebrate Populations.’ (John Wiley & Sons: New York, NY, USA.)

Choquenot, D., Hone, J., and Saunders, G. (1999). Using aspects of predator--prey theory to evaluate helicopter shooting for feral pig control. Wildlife Research 26, 251–261.
Using aspects of predator--prey theory to evaluate helicopter shooting for feral pig control.Crossref | GoogleScholarGoogle Scholar |

DeLury, D. B. (1947). On the estimation of biological populations. Biometrics 3, 145–167.
On the estimation of biological populations.Crossref | GoogleScholarGoogle Scholar | 18902271PubMed |

Fewster, R. M., Southwell, C., Borchers, D. L., Buckland, S. T., and Pople, A. R. (2008). The influence of animal mobility on the assumption of uniform distances in aerial line-transect surveys. Wildlife Research 35, 275–288.
The influence of animal mobility on the assumption of uniform distances in aerial line-transect surveys.Crossref | GoogleScholarGoogle Scholar |

Field, S. A., Tyre, A. J., Thorn, K. H., O’Connor, P. J., and Possingham, H. P. (2005). Improving the efficiency of wildlife monitoring by estimating detectability: a case study of foxes (Vulpes vulpes) on the Eyre Peninsula, South Australia. Wildlife Research 32, 253–258.
Improving the efficiency of wildlife monitoring by estimating detectability: a case study of foxes (Vulpes vulpes) on the Eyre Peninsula, South Australia.Crossref | GoogleScholarGoogle Scholar |

Gelman, A., Carlin, J. B., Stern, H. S., and Rubin, D. B. (2004). ‘Bayesian Data Analysis.’ 2nd edn. (Chapman & Hall: London, UK.)

Heydon, M. J., and Reynolds, J. C. (2000). Fox (Vulpes vulpes) management in three contrasting regions in Britain, in relation to agricultural and sporting interests. Journal of Zoology 251, 237–252.
Fox (Vulpes vulpes) management in three contrasting regions in Britain, in relation to agricultural and sporting interests.Crossref | GoogleScholarGoogle Scholar |

Heydon, M. J., Reynolds, J. C., and Short, M. J. (2000). Variation in abundance of foxes (Vulpes vulpes) between three regions of rural Britain, in relation to landscape and other variables. Journal of Zoology 251, 253–264.
Variation in abundance of foxes (Vulpes vulpes) between three regions of rural Britain, in relation to landscape and other variables.Crossref | GoogleScholarGoogle Scholar |

Hilborn, R., and Walters, C. J. (1992). ‘Quantitative Fisheries Stock Assessment: Choice, Dynamics & Uncertainty.’ (Chapman & Hall Inc.: New York, NY, USA.)

Holling, C. S. (1959a). Some characteristics of simple types of predation and parasitism. Canadian Entomologist 91, 385–398.
Some characteristics of simple types of predation and parasitism.Crossref | GoogleScholarGoogle Scholar |

Holling, C. S. (1959b). The components of predation as revealed by a study of small-mammal predation of the European pine sawfly. Canadian Entomologist 91, 293–320.
The components of predation as revealed by a study of small-mammal predation of the European pine sawfly.Crossref | GoogleScholarGoogle Scholar |

Holling, C. S. (1965). The functional response of predators to prey density and its role in mimicry and population regulation. Memoirs of the Entomological Society of Canada 97, 5–60.
The functional response of predators to prey density and its role in mimicry and population regulation.Crossref | GoogleScholarGoogle Scholar |

Hone, J. (1990). Predator-prey theory and feral pig control, with emphasis on evaluation of shooting from a helicopter. Wildlife Research 17, 123–130.
Predator-prey theory and feral pig control, with emphasis on evaluation of shooting from a helicopter.Crossref | GoogleScholarGoogle Scholar |

Jhala, Y., Qureshi, Q., and Gopal, R. (2011). Can the abundance of tigers be assessed from their signs? Journal of Applied Ecology 48, 14–24.
Can the abundance of tigers be assessed from their signs?Crossref | GoogleScholarGoogle Scholar |

Johnson, D. H. (2008). In defense of indices: the case of bird surveys. The Journal of Wildlife Management 72, 857–868.

Jones, J. P. G. (2011). Monitoring species abundance and distribution at the landscape scale. Journal of Applied Ecology 48, 9–13.
Monitoring species abundance and distribution at the landscape scale.Crossref | GoogleScholarGoogle Scholar |

Keane, A., Jones, J. P. G., and Milner-Gulland, E. J. (2011). Encounter data in resource management and ecology: pitfalls and possibilities. Journal of Applied Ecology 48, 1164–1173.
Encounter data in resource management and ecology: pitfalls and possibilities.Crossref | GoogleScholarGoogle Scholar |

Kéry, M., and Schaub, M. (2012). State–space models for population counts. In ‘Bayesian Population Analysis using WinBUGS: a Hierarchical Perspective’. (Eds M. Kéry and M. Schaub.) pp. 115–132. (Academic Press: Boston, MA, USA.)

Kuhnert, P. M., Martin, T. G., and Griffiths, S. P. (2010). A guide to eliciting and using expert knowledge in Bayesian ecological models. Ecology Letters 13, 900–914.
A guide to eliciting and using expert knowledge in Bayesian ecological models.Crossref | GoogleScholarGoogle Scholar | 20497209PubMed |

Leslie, P. H., and Davis, D. H. S. (1939). An attempt to determine the absolute number of rats on a given area. Journal of Animal Ecology 8, 94–113.
An attempt to determine the absolute number of rats on a given area.Crossref | GoogleScholarGoogle Scholar |

Macdonald, D. W., and Reynolds, J. C. (2004). Red Fox Vulpes vulpes. In ‘Canids: Foxes, Wolves, Jackals and Dogs. Status Survey and Conservation Action Plan’. (Eds C. Sillero-Zubiri, M. Hoffmann, and D. W. Macdonald.) pp. 129–136. (IUCN/SSC Canid Specialist Group: Gland, Switzerland, and Cambridge, UK.)

Martin, T. G., Kuhnert, P. M., Mengersen, K., and Possingham, H. P. (2005). The power of expert opinion in ecological models using Bayesian methods: impact of grazing on birds. Ecological Applications 15, 266–280.
The power of expert opinion in ecological models using Bayesian methods: impact of grazing on birds.Crossref | GoogleScholarGoogle Scholar |

Martin, T. G., Arcese, P., Kuhnert, P. M., Gaston, A. J., and Martin, J.-L. (2013). Prior information reduces uncertainty about the consequences of deer overabundance on forest birds. Biological Conservation 165, 10–17.
Prior information reduces uncertainty about the consequences of deer overabundance on forest birds.Crossref | GoogleScholarGoogle Scholar |

McAllister, M. K., and Kirkwood, G. P. (1998). Using a Bayesian decision analysis to help achieve a precautionary approach for managing developing fisheries. Canadian Journal of Fisheries and Aquatic Sciences 55, 2642–2661.
Using a Bayesian decision analysis to help achieve a precautionary approach for managing developing fisheries.Crossref | GoogleScholarGoogle Scholar |

McAllister, M. K., Pikitch, E. K., and Babcock, E. A. (2001). Using demographic methods to construct Bayesian priors for the intrinsic rate of increase in the Schaefer model and implications for stock rebuilding. Canadian Journal of Fisheries and Aquatic Sciences 58, 1871–1890.
Using demographic methods to construct Bayesian priors for the intrinsic rate of increase in the Schaefer model and implications for stock rebuilding.Crossref | GoogleScholarGoogle Scholar |

McAllister, M. K., Stanley, R. D., and Starr, P. (2010). Using experiments and expert judgement to model catchability of Pacific rockfishes in trawl surveys, with application to bocaccio (Sebastes paucispinis) off British Columbia. Fishery Bulletin 108, 282–304.

McCarthy, M. A. (2007). ‘Bayesian Methods for Ecology.’ (Cambridge University Press: Cambridge, UK.)

McCarthy, M. A., and Masters, P. (2005). Profiting from prior information in Bayesian analyses of ecological data. Journal of Applied Ecology 42, 1012–1019.
Profiting from prior information in Bayesian analyses of ecological data.Crossref | GoogleScholarGoogle Scholar |

Newman, K. B., Buckland, S. T., Morgan, B. J. T., King, R., Borchers, D. L., Cole, D. J., Besbeas, P., Gimenez, O., and Thomas, L. (2014). ‘Modelling Population Dynamics: Model Formulation, Fitting and Assessment using State--space Methods.’ Available at http://dx.doi.org/10.1007/978-1-4939-0977-3 [Verified 27 December 2014].

Nimmo, D. G., Watson, S. J., Forsyth, D. M., and Bradshaw, C. J. A. (2015). FORUM: dingoes can help conserve wildlife and our methods can tell. Journal of Applied Ecology 52, 281–285.
FORUM: dingoes can help conserve wildlife and our methods can tell.Crossref | GoogleScholarGoogle Scholar |

Otis, D. L., Burnham, K. P., White, G. C., and Anderson, D. R. (1978). Statistical inference from capture data on closed animal populations. Wildlife Monographs 62, 3–135.

Plummer, M., Best, N., Cowles, K., and Vines, K. (2006). CODA: convergence diagnosis and output analysis for MCMC. R News 6, 7–11.

Pollock, K. H., Nichols, J. D., Simons, T. R., Farnsworth, G. L., Bailey, L. L., and Sauer, J. R. (2002). Large scale wildlife monitoring studies: statistical methods for design and analysis. Environmetrics 13, 105–119.
Large scale wildlife monitoring studies: statistical methods for design and analysis.Crossref | GoogleScholarGoogle Scholar |

Porteus, T. A., Richardson, S. M., and Reynolds, J. C. (2011). The importance of survey design in distance sampling: field evaluation using domestic sheep. Wildlife Research 38, 221–234.
The importance of survey design in distance sampling: field evaluation using domestic sheep.Crossref | GoogleScholarGoogle Scholar |

R Core Team (2018). ‘R: a Language and Environment for Statistical Computing’ (R Foundation for Statistical Computing: Vienna, Austria.) Available at http://www.R-project.org/ [Verified 20 March 2019].

Reynolds, J. C. (2000). ‘Fox Control in the Countryside.’ (The Game Conservancy Trust: Fordingbridge, UK.)

Reynolds, J. C., and Tapper, S. C. (1996). Control of mammalian predators in game management and conservation. Mammal Review 26, 127–156.
Control of mammalian predators in game management and conservation.Crossref | GoogleScholarGoogle Scholar |

Rist, J., Rowcliffe, M., Cowlishaw, G., and Milner-Gulland, E. J. (2008). Evaluating measures of hunting effort in a bushmeat system. Biological Conservation 141, 2086–2099.
Evaluating measures of hunting effort in a bushmeat system.Crossref | GoogleScholarGoogle Scholar |

Roseberry, J. L., and Woolf, A. (1991). A comparative evaluation of techniques for analysing white-tailed deer harvest data. Wildlife Monographs 117, 3–59.

Ruette, S., Stahl, P., and Albaret, M. (2003). Applying distance-sampling methods to spotlight counts of red foxes. Journal of Applied Ecology 40, 32–43.
Applying distance-sampling methods to spotlight counts of red foxes.Crossref | GoogleScholarGoogle Scholar |

Sadlier, L. M. J., Webbon, C. C., Baker, P. J., and Harris, S. (2004). Methods of monitoring red foxes Vulpes vulpes and badgers Meles meles: are field signs the answer? Mammal Review 34, 75–98.
Methods of monitoring red foxes Vulpes vulpes and badgers Meles meles: are field signs the answer?Crossref | GoogleScholarGoogle Scholar |

Seber, G. A. F. (1982). ‘The Estimation of Animal Abundance and Related Parameters.’ 2nd edn. (Charles Griffin: London, UK.)

Soulsbury, C. D., Iossa, G., Baker, P. J., Cole, N. C., Funk, S. M., and Harris, S. (2007). The impact of sarcoptic mange Sarcoptes scabiei on the British fox Vulpes vulpes population. Mammal Review 37, 278–296.

Spiegelhalter, D. J., Thomas, A., Best, N. G., and Lunn, D. J. (2007). ‘WinBUGS.’ (Medical Research Council Biostatistics Unit: Cambridge, UK.) Available at http://www.mrc-bsu.cam.ac.uk/software/bugs/the-bugs-project-winbugs/ [Verified 20 March 2019].

Stephens, P. A., Pettorelli, N., Barlow, J., Whittingham, M. J., and Cadotte, M. W. (2015). Management by proxy? The use of indices in applied ecology. Journal of Applied Ecology 52, 1–6.
Management by proxy? The use of indices in applied ecology.Crossref | GoogleScholarGoogle Scholar |

Sturtz, S., Ligges, U., and Gelman, A. (2005). R2WinBUGS: a package for running WinBUGS from R. Journal of Statistical Software 12, 1–16.
R2WinBUGS: a package for running WinBUGS from R.Crossref | GoogleScholarGoogle Scholar |

Tapper, S. C. (1992). ‘Game Heritage: An Ecological Review from Shooting and Gamekeeping Records.’ (The Game Conservancy: Fordingbridge, UK.)

Thomas, L., Buckland, S. T., Rexstad, E. A., Laake, J. L., Strindberg, S., Hedley, S. L., Bishop, J. R., Marques, T. A., and Burnham, K. P. (2010). Distance software: design and analysis of distance sampling surveys for estimating population size. Journal of Applied Ecology 47, 5–14.
Distance software: design and analysis of distance sampling surveys for estimating population size.Crossref | GoogleScholarGoogle Scholar | 20383262PubMed |

Thompson, S. K. (2012). ‘Sampling.’ (John Wiley & Sons, Inc.: Hoboken, NJ, USA.) Available at http://doi.wiley.com/10.1002/9781118162934 [Verified 6 October 2016].

Van Deelen, T., and Etter, D. (2003). Effort and the functional response of deer hunters. Human Dimensions of Wildlife 8, 97–108.
Effort and the functional response of deer hunters.Crossref | GoogleScholarGoogle Scholar |

Venables, W. N., and Ripley, B. D. (2002). ‘Modern Applied Statistics with S.’ 4th edn. (Springer: New York, NY, USA.)

White, G. C. (2005). Correcting wildlife counts using detection probabilities. Wildlife Research 32, 211–216.
Correcting wildlife counts using detection probabilities.Crossref | GoogleScholarGoogle Scholar |

Whitlock, R. E., Aebischer, N. J., and Reynolds, J. C. (2003). The National Gamebag Census as a tool for monitoring mammal abundance in the UK. JNCC Research report. The Game Conservancy Trust, Fordingbridge, UK.