Free Standard AU & NZ Shipping For All Book Orders Over $80!
Register      Login
Wildlife Research Wildlife Research Society
Ecology, management and conservation in natural and modified habitats
RESEARCH ARTICLE

Hidden biodiversity in rare northern Australian vertebrates: the case of the clawless geckos (Crenadactylus, Diplodactylidae) of the Kimberley

Paul M. Oliver A B E , Paul Doughty C and Russell Palmer D
+ Author Affiliations
- Author Affiliations

A Department of Zoology, University of Melbourne, Parkville, Vic. 3052, Australia.

B Museum Victoria, GPO Box 666, Melbourne, Vic. 3001, Australia.

C Department of Terrestrial Zoology, Western Australian Museum, 49 Kew Street, Welshpool, WA 6106, Australia.

D Science Division, Department of Environment and Conservation, PO Box 51, Wanneroo, WA 6946, Australia.

E Corresponding author. Email: Paul.Oliver@unimelb.edu.au

Wildlife Research 39(5) 429-435 https://doi.org/10.1071/WR12024
Submitted: 3 February 2012  Accepted: 24 April 2012   Published: 14 June 2012

Abstract

Context: The phylogenetic diversity and biogeography of most animal and plant lineages endemic to the Australian Monsoonal tropics remains poorly understood. Of particular note (and in contrast to many other tropical regions in both Australia and elsewhere) is the current paucity of evidence for diverse endemic radiations of restricted-range taxa.

Aims: To use recently collected material from major surveys of the Kimberley Islands, Western Australia, to expand on a previous study that provided preliminary evidence of very high levels of geographically structured phylogenetic diversity in a lineage of tiny geckos (Crenadactylus).

Methods: Mitochondrial (ND2) and nuclear (RAG-1) sequence data were used to estimate the relationships, phylogenetic diversity and timescale of diversification of all populations of Crenadactylus from northern Australia from which samples for genetic analysis were available.

Key results: In striking contrast to the two subspecies currently recognised in the Kimberley, our analyses confirm the existence of a notable diversity of highly divergent and apparently allopatric lineages within the Kimberley, including at least 10 that are estimated to date to the late Pliocene/early Miocene (or earlier) and seven that we recognise as candidate new species. Most of this diversity is concentrated in the high-rainfall zone along the western edge of the Kimberley.

Key conclusions: A growing number of genetic datasets are revealing northern Australian vertebrate clades characterised by the juxtaposition of deeply divergent and highly geographically structured genetic diversity on the one hand, and major geographic gaps in sampling that impede full assessment of the distribution and taxonomic significance of this diversity on the other.

Implications: There is a pressing need for further surveys, voucher material and phylogenetic analyses to allow us to properly understand the diversity, biogeography and conservation needs of the northern Australian biota.

Additional keywords: cryptic species, lizards, microendemism, Monsoon Biome, phylogenetic diversity, sampling gaps.


References

Bowman, D. M. J. S., Brown, G. K., Braby, M. F., Brown, J. R., Cook, L. G., Crisp, M. D., Ford, F., Haberle, S., Hughes, J., Isagi, Y., Joseph, L., McBride, J., Nelson, G., and Ladiges, P. Y. (2010). Biogeography of the Australian monsoon tropics. Journal of Biogeography 37, 201–216.
Biogeography of the Australian monsoon tropics.Crossref | GoogleScholarGoogle Scholar |

Brandley, M. C., Wang, Y., Guo, X., Nieto Montes de Oca, A., Fería Ortíz, M., Hikada, T., and Ota, H. (2011). Accommodating heterogenous rates of evolution in molecular dating methods: an example using intercontinental dispersal of Plestiodon (Eumeces) lizards. Systematic Biology 60, 3–15.
Accommodating heterogenous rates of evolution in molecular dating methods: an example using intercontinental dispersal of Plestiodon (Eumeces) lizards.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BC3cXhsFGru77K&md5=580ee90ba7f66005ec93f964eaaba0b1CAS |

Drummond, A. J., and Rambaut, A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7, 214.
BEAST: Bayesian evolutionary analysis by sampling trees.Crossref | GoogleScholarGoogle Scholar |

Gibson, L. A., and McKenzie, N. L. (2012). Identification of biodiversity assets of selected Kimberley islands: background and implementation. Records of the Western Australian Museum 81, 1–14.

Horner, P., and Adams, M. (2007). A molecular-systematic assessment of species boundaries in Australian Crytoblepharus (Reptilia: Squamata: Scincidae) – a case study for the combined use of allozymes and morphology to explore cryptic biodiversity. The Beagle 3, 1–19.

Hoskin, C. J. (2004). Australian microhylid frogs (Cophixalus and Austrochaperina): phylogeny, taxonomy, calls, distributions and breeding biology. Australian Journal of Zoology 52, 237–269.
Australian microhylid frogs (Cophixalus and Austrochaperina): phylogeny, taxonomy, calls, distributions and breeding biology.Crossref | GoogleScholarGoogle Scholar |

Johnson, M. S., O’Brien, E. K., and Fitzpatrick, J. J. (2010). Deep, hierarchical divergence of mitochondrial DNA in Amplirhagada land snails (Gastropoda: Camaenidae) from the Bonaparte Archipelago, Western Australia. Biological Journal of the Linnean Society. Linnean Society of London 100, 141–153.
Deep, hierarchical divergence of mitochondrial DNA in Amplirhagada land snails (Gastropoda: Camaenidae) from the Bonaparte Archipelago, Western Australia.Crossref | GoogleScholarGoogle Scholar |

King, M. (1987). Origin of the Gekkonidae: chromosomal and albumin-evolution suggests Gondwanaland. Search 18, 252–254.

Köhler, F. (2011). The camaenid species of the Kimberley Islands, Western Australia (Stylommatophora: Helicoidea). Malacologia 54, 203–406.
The camaenid species of the Kimberley Islands, Western Australia (Stylommatophora: Helicoidea).Crossref | GoogleScholarGoogle Scholar |

Marshall, D. C., Simon, C., and Buckley, T. R. (2006). Accurate branch length estimation in partitioned Bayesian analyses requires accommodation of among-partition rate variation and attention to branch length priors. Systematic Biology 55, 993–1003.
Accurate branch length estimation in partitioned Bayesian analyses requires accommodation of among-partition rate variation and attention to branch length priors.Crossref | GoogleScholarGoogle Scholar |

Nielsen, S. V., Bauer, A. M., Jackman, T. R., Hitchmough, R. A., and Daugherty, C. H. (2011). New Zealand geckos (Diplodactylidae): cryptic diversity in a post-Gondwanan lineage with trans-Tasman affinities. Molecular Phylogenetics and Evolution 59, 1–22.
New Zealand geckos (Diplodactylidae): cryptic diversity in a post-Gondwanan lineage with trans-Tasman affinities.Crossref | GoogleScholarGoogle Scholar |

Oliver, P. M., and Sanders, K. (2009). Molecular evidence for Gondwanan origins of multiple lineages within a diverse Australasian gecko radiation. Journal of Biogeography 36, 2044–2055.
Molecular evidence for Gondwanan origins of multiple lineages within a diverse Australasian gecko radiation.Crossref | GoogleScholarGoogle Scholar |

Oliver, P. M., Adams, M., and Doughty, P. (2010). Extreme underestimation of evolutionary diversity within a nominal Australian gecko species (Crenadactylus ocellatus). BMC Evolutionary Biology 10, 386.
Extreme underestimation of evolutionary diversity within a nominal Australian gecko species (Crenadactylus ocellatus).Crossref | GoogleScholarGoogle Scholar |

Pepper, M., Fujita, M. K., Moritz, C., and Keogh, J. S. (2011). Paleoclimate change drove diversification among isolated mountain refugia in the Australian arid zone. Molecular Ecology 20, 1529–1545.
Paleoclimate change drove diversification among isolated mountain refugia in the Australian arid zone.Crossref | GoogleScholarGoogle Scholar |

Smith, K., Harmon, L. J., Shoo, L. P., and Melville, J. (2011). Evidence of constrained phenotypic evolution in a cryptic species complex of agamid lizards. Evolution 65, 976–992.
Evidence of constrained phenotypic evolution in a cryptic species complex of agamid lizards.Crossref | GoogleScholarGoogle Scholar |

Smith, L. A., and Adams, M. (2007). Revision of the Lerista muelleri species group (Lacertilia: Scincidae) in Western Australia, with a redescription of L. muelleri (Fisher, 1881) and the description of nine new species. Records of the Western Australian Museum 23, 309–357.

Solem, A., and McKenzie, N. L. (1991). The composition of land snail assemblages in Kimberley rainforests. In ‘Kimberley Rainforests of Australia’. (Eds N. L. McKenzie, R. B. Johnston and P. G. Kendrick.) pp. 247–263. (Surrey Beatty: Sydney.)

Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics (Oxford, England) 22, 2688–2690.
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD28XhtFKlsbfI&md5=65952524e202a7eb2b6df8a1e9d8411fCAS |

Storr, G. M. (1978). Seven new gekkonid lizards from Western Australia. Records of the Western Australian Museum 6, 337–350.

Townsend, T. M., Vieites, D. R., Glaw, F., and Vences, M. (2009). Testing species-level diversification hypotheses in Madagascar: the case of microendemic Brookesia leaf chameleons. Systematic Biology 58, 641–656.
Testing species-level diversification hypotheses in Madagascar: the case of microendemic Brookesia leaf chameleons.Crossref | GoogleScholarGoogle Scholar |

Woinarski, J. C. Z., Hempel, C., Cowie, I., Brennan, K., Kerrigan, R., Leach, G., and Russell-Smith, J. (2006). Distributional pattern of plant species endemic to the Northern Territory, Australia. Australian Journal of Botany 54, 627–640.
Distributional pattern of plant species endemic to the Northern Territory, Australia.Crossref | GoogleScholarGoogle Scholar |

Zamudio, K. R., and Greene, H. W. (1997). Phylogeography of the bushmaster (Lachesis muta: Viperidae): implications for neotropical biogeography, systematics, and conservation. Biological Journal of the Linnean Society. Linnean Society of London 62, 421–442.