Microbial community composition and activity in paired irrigated and non-irrigated pastures in New Zealand
Suzanne M. Lambie A * , Paul L. Mudge A and Bryan A. Stevenson AA Manaaki Whenua – Landcare Research, Private Bag 3127, Hamilton 3240, New Zealand.
Soil Research 60(4) 337-348 https://doi.org/10.1071/SR21149
Submitted: 4 June 2021 Accepted: 1 October 2021 Published: 17 November 2021
© 2022 The Author(s) (or their employer(s)). Published by CSIRO Publishing. This is an open access article distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND)
Abstract
Context: Microorganisms are key for carbon (C) and nitrogen (N) cycling in soils supporting agricultural production.
Aims: We investigated the impacts of irrigation on microbial community structure and activity in New Zealand on 28 paired non-irrigated and irrigated grazed pasture sites where C and N had decreased under irrigation.
Methods: Microbial community structure and microbial biomass (phospholipid fatty acids) and activity (basal respiration, substrate-induced respiration (SIR), aerobically mineralisable N (AerMN)) were assessed.
Key results: Microbial biomass did not differ between irrigated and non-irrigated soils, but irrigated soils had increased gram-negative bacteria (P < 0.05), lower gram-positive:gram-negative ratio (P < 0.001) and lower fungal:bacterial ratio (P < 0.001) compared to non-irrigated soils. SIR and AerMN were greater in irrigated compared to non-irrigated soils. There were no differences in basal respiration between irrigation treatments. Greater prevalence of gram-negative bacteria (r-strategist) as well as decreases in actinomycetes and fungal to bacterial ratio, and increased SIR and AerMN suggest more rapid cycling of C and nutrients in irrigated systems where C had been lost.
Conclusions: We found clear evidence that irrigation alters microbial community structure and activity in New Zealand pasture systems.
Implications: Irrigation driven alteration of microbial populations may contribute to losses of soil SOM and soils’ ability to deliver ecosystem services.
Keywords: aerobically mineralisable nitrogen, carbon cycling, gram-negative bacteria, fungal:bacterial ratio, irrigation, microbial community composition, nitrogen, substrate induced respiration.
References
Araya JN, Gowing DJ, Dise N (2013) Does soil nitrogen availability mediate the response of grassland composition to water regime? Journal of Vegetation Science 24, 506–517.| Does soil nitrogen availability mediate the response of grassland composition to water regime?Crossref | GoogleScholarGoogle Scholar |
Barakat M, Cheviron B, Angulo-Jaramillo R (2016) Influence of the irrigation technique and strategies on the nitrogen cycle and budget: a review. Agricultural Water Management 178, 225–238.
| Influence of the irrigation technique and strategies on the nitrogen cycle and budget: a review.Crossref | GoogleScholarGoogle Scholar |
Bardgett RD, Hobbs PJ, Frostegård Å (1996) Changes in soil fungal:bacterial biomass ratios following reductions in the intensity of management of an upland grassland. Biology and Fertility of Soils 22, 261–264.
| Changes in soil fungal:bacterial biomass ratios following reductions in the intensity of management of an upland grassland.Crossref | GoogleScholarGoogle Scholar |
Bhatti AA, Haq S, Bhat RA (2017) Actinomycetes benefaction role in soil and plant health. Microbial Pathogenesis 111, 458–467.
| Actinomycetes benefaction role in soil and plant health.Crossref | GoogleScholarGoogle Scholar | 28923606PubMed |
Bligh EG, Dyer WJ (1959) A rapid method of total lipid extraction and purification. Canadian Journal of Biochemistry and Physiology 37, 911–917.
| A rapid method of total lipid extraction and purification.Crossref | GoogleScholarGoogle Scholar | 13671378PubMed |
Carmona CR, Clough TJ, McNally SR, Beare MH, Tregurtha CS, Hunt JE (2020) Seasonal irrigation affects the partitioning of new photosynthate carbon in soil. Soil Biology and Biochemistry 143, 107751
| Seasonal irrigation affects the partitioning of new photosynthate carbon in soil.Crossref | GoogleScholarGoogle Scholar |
Chen R, Senbayram M, Blagodatsky S, Myachina O, Dittert K, Lin X, Blagodatskaya E, Kuzyakov Y (2014) Soil C and N availability determines the priming effect: microbial N mining and stoichometric decomposition theories. Global Change Biology 20, 2350–2367.
| Soil C and N availability determines the priming effect: microbial N mining and stoichometric decomposition theories.Crossref | GoogleScholarGoogle Scholar |
Condron LM, Hopkins DW, Gregorich EG, Black A, Wakelin SA (2014) Long-term irrigation effects on soil organic matter under temperate grazed pasture. European Journal of Soil Science 65, 741–750.
| Long-term irrigation effects on soil organic matter under temperate grazed pasture.Crossref | GoogleScholarGoogle Scholar |
Corong E, Hensen M, Journeaux P (2014) Value of irrigation in New Zealand: an economy-wide assessment. NZ Institute of Economic Research Ltd and AgFirst Consultants Ltd, Wellington, NZ.
de Vries FT, Liiri ME, Bjørnlund L, Bowker MA, Christensen S, Setälä HM, Bardgett RD (2012) Land use alters the resistance and resilience of soil food webs to drought. Nature Climate Change 2, 276–280.
| Land use alters the resistance and resilience of soil food webs to drought.Crossref | GoogleScholarGoogle Scholar |
de Vries FT, Shade A (2013) Controls on soil microbial community stability under climate change. Frontiers in Microbiology 4,
| Controls on soil microbial community stability under climate change.Crossref | GoogleScholarGoogle Scholar | 24032030PubMed |
de Vries FT, van Groenigen JW, Hoffland E, Bloem J (2011) Nitrogen losses from two grassland soils with different fungal biomass. Soil Biology and Biochemistry 43, 997–1005.
| Nitrogen losses from two grassland soils with different fungal biomass.Crossref | GoogleScholarGoogle Scholar |
FAO (2016) Aquastat website. Available at http://www.fao.org/nr/water/aquastat/didyouknow/index3.stm [Accessed 3 February 2017]
Feyissa A, Yang F, Wu J, Chen Q, Zhang D, Cheng X (2021) Soil nitrogen dynamics at a regional scale along a precipitation gradient in secondary grassland of China. Science of The Total Environment 781, 146736
| Soil nitrogen dynamics at a regional scale along a precipitation gradient in secondary grassland of China.Crossref | GoogleScholarGoogle Scholar |
Fierer N, Bradford MA, Jackson RB (2007) Toward an ecological classification of soil bacteria. Ecology 88, 1354–1364.
| Toward an ecological classification of soil bacteria.Crossref | GoogleScholarGoogle Scholar | 17601128PubMed |
Fontaine S, Mariotti A, Abbadie L (2003) The priming effect of organic matter: a question of microbial competition? Soil Biology and Biochemistry 35, 837–843.
| The priming effect of organic matter: a question of microbial competition?Crossref | GoogleScholarGoogle Scholar |
Harris R (1981) Effect of water potential on microbial growth and activity in soils. In ‘Water potential relations on soil microbiology’. (Eds JF Parr, WR Gardner, LF Elliott) pp. 23–96. (Soil Science Society of America: Madison, WI)
Hawkes CV, Shinada M, Kivlin SN (2020) Historical climate legacies on soil respiration persist despite extreme changes in rainfall. Soil Biology and Biochemistry 143, 107752
| Historical climate legacies on soil respiration persist despite extreme changes in rainfall.Crossref | GoogleScholarGoogle Scholar |
Kaur A, Chaudhary A, Kaur A, Choudhary R, Kaushik R (2005) Phospholipid fatty acid – a bioindicator of environment monitoring and assessment in soil ecosystems. Current Science 89, 1103–1112.
Kelliher FM, Condron LM, Cook FJ, Black A (2012) Sixty years of seasonal irrigation affects carbon storage in soils beneath pasture grazed by sheep. Agriculture, Ecosystems & Environment 148, 29–36.
| Sixty years of seasonal irrigation affects carbon storage in soils beneath pasture grazed by sheep.Crossref | GoogleScholarGoogle Scholar |
Kenngott KGJ, Riess K, Muñoz K, Schaumann GE, Buhk C, Diehl D (2021) Flood pulse irrigation of meadows shapes soil chemical and microbial parameters more than mineral fertilization. Soil Systems 5, 24
| Flood pulse irrigation of meadows shapes soil chemical and microbial parameters more than mineral fertilization.Crossref | GoogleScholarGoogle Scholar |
Klappenbach JA, Dunbar JM, Schmidt TM (2000) rRNA operon copy number reflects ecological strategies of bacteria. Applied and Environmental Microbiology 66, 1328–1333.
| rRNA operon copy number reflects ecological strategies of bacteria.Crossref | GoogleScholarGoogle Scholar | 10742207PubMed |
Knapp AK, Briggs JM, Koelliker JK (2001) Frequency and extent of water limitation to primary production in a mesic temperate grassland. Ecosystems 4, 19–28.
| Frequency and extent of water limitation to primary production in a mesic temperate grassland.Crossref | GoogleScholarGoogle Scholar |
Kuzyakov Y, Friedel JK, Stahr K (2000) Review of mechanisms and quantification of priming effects. Soil Biology and Biochemistry 32, 1485–1498.
| Review of mechanisms and quantification of priming effects.Crossref | GoogleScholarGoogle Scholar |
Lin D, McCulley RL, Nelson JA, Jacobsen KL, Zhang D (2020) Time in pasture rotation alters soil microbial community composition and function and increases carbon sequestration potential in a temperate agroecosystem. Science of the Total Environment 698, 134233
| Time in pasture rotation alters soil microbial community composition and function and increases carbon sequestration potential in a temperate agroecosystem.Crossref | GoogleScholarGoogle Scholar |
Ma H-K, Bai G-Y, Sun Y, Kostenko O, Zhu X, Lin S, Ruan W-B, Zhao N-X, Bezemer TM (2016) Opposing effects of nitrogen and water addition on soil bacterial and fungal communities in the Inner Mongolia steppe: a field experiment. Applied Soil Ecology 108, 128–135.
| Opposing effects of nitrogen and water addition on soil bacterial and fungal communities in the Inner Mongolia steppe: a field experiment.Crossref | GoogleScholarGoogle Scholar |
Miao Y, Han H, Du Y, Zhang Q, Jiang L, Hui D, Wan S (2017) Nonlinear responses of soil respiration to precipitation changes in a semiarid temperate steppe. Scientific Reports 7, 45782
| Nonlinear responses of soil respiration to precipitation changes in a semiarid temperate steppe.Crossref | GoogleScholarGoogle Scholar | 28361982PubMed |
Moinet GYK, Cieraad E, Hunt JE, Fraser A, Turnbull MH, Whitehead D (2016) Soil heterotrophic respiration is insensitive to changes in soil water content but related to microbial access to organic matter. Geoderma 274, 68–78.
| Soil heterotrophic respiration is insensitive to changes in soil water content but related to microbial access to organic matter.Crossref | GoogleScholarGoogle Scholar |
Moreno G, Hernández-Estebar A, Rolo V, Igual JM (2021) The enduring effects of sowing legume-rich mixtures on the soil microbial community and soil carbon in semi-arid wood pastures. Plant and Soil 465, 563–582.
Mudge PL, Kelliher FM, Knight TL, O’Connell D, Fraser S, Schpper LA (2017) Irrigated grazed pasture decreases soil carbon and nitrogen stocks. Global Change Biology 23, 945–954.
| Irrigated grazed pasture decreases soil carbon and nitrogen stocks.Crossref | GoogleScholarGoogle Scholar | 27483409PubMed |
Orwin KH, Dickie IA, Holdaway R, Wood JR (2018) A comparison of the ability of PLFA and 16S rRNA gene metabarcoding to resolve soil community change and predict ecosystem functions. Soil Biology and Biochemistry 117, 27–35.
| A comparison of the ability of PLFA and 16S rRNA gene metabarcoding to resolve soil community change and predict ecosystem functions.Crossref | GoogleScholarGoogle Scholar |
Orwin KH, Dickie IA, Wood JR, Bonner KI, Holdaway RJ (2016) Soil microbial community structure explains the resistance of respiration to a dry-rewet cycle, but not soil functioning under static conditions. Functional Ecology 30, 1430–1439.
| Soil microbial community structure explains the resistance of respiration to a dry-rewet cycle, but not soil functioning under static conditions.Crossref | GoogleScholarGoogle Scholar |
Pakrou N, Dillon P (2000) Key processes of the nitrogen cycle in an irrigated and a non-irrigated pasture. Plant and Soil 224, 231–250.
| Key processes of the nitrogen cycle in an irrigated and a non-irrigated pasture.Crossref | GoogleScholarGoogle Scholar |
Parfitt RL, Yeates GW, Ross DJ, Mackay AD, Budding PJ (2005) Relationships between soil biota, nitrogen and phosphorus availability and pasture growth under organic, and conventional management. Applied Soil Ecology 28, 1–13.
| Relationships between soil biota, nitrogen and phosphorus availability and pasture growth under organic, and conventional management.Crossref | GoogleScholarGoogle Scholar |
Paul KI, Polglase PJ, O’Connell AM, Carlyle JC, Smethurst PJ, Kanna PK (2003) Defining the relation between soil water content and net nitrogen mineralization. European Journal of Soil Science 54, 39–48.
| Defining the relation between soil water content and net nitrogen mineralization.Crossref | GoogleScholarGoogle Scholar |
Schipper LA, Dodd MB, Pronger J, Mudge PL, Upsell M, Moss RA (2012) Decadal changes in soil carbon and nitrogen under a range of irrigation and phosphorus fertilizer treatments. Soil Science Society of America Journal 77, 246–256.
| Decadal changes in soil carbon and nitrogen under a range of irrigation and phosphorus fertilizer treatments.Crossref | GoogleScholarGoogle Scholar |
Schipper LA, Petrie OJ, O’Neill TA, Mudge PL, Liáng LL, Robinson JM, Arcus VL (2019) Shifts in temperature response of soil respiration between adjacent irrigated and non-irrigated grazed pastures. Agriculture, Ecosystems & Environment 285, 106620
| Shifts in temperature response of soil respiration between adjacent irrigated and non-irrigated grazed pastures.Crossref | GoogleScholarGoogle Scholar |
Siebielec S, Siebielec G, Klimkowicz-Pawlas A, Gałązka A, Grządziel J, Stuczyński T (2020) Impact of water stress on microbial community and activity in sandy and loamy soils. Agronomy 10, 1429
| Impact of water stress on microbial community and activity in sandy and loamy soils.Crossref | GoogleScholarGoogle Scholar |
Thenkabail PS, Biradar CM, Turral H, Noojipady P, Li YJ, Vinthanage J, Dheerarath V, Velpuri M, Schull M, Cai XL, Dutta R (2006) ‘An irrigated area map of the world (1999) derived from remote sensing’. (International Water Management Institute: Colombo, Sir Lanka)
Throop HL, Seely MK, Marufu VJ Throop HL, Seely MK, Marufu VJ (2020) Multiple scales of spatial heterogeneity control soil respiration responses to precipitation across a dryland rainfall gradient. Plant and Soil 453, 423–443.
| Multiple scales of spatial heterogeneity control soil respiration responses to precipitation across a dryland rainfall gradient.Crossref | GoogleScholarGoogle Scholar |
Treseder KK, Kivlin SN, Hawkes CV (2011) Evolutionary trade-offs among decomposers determine responses to nitrogen enrichment. Ecology Letters 14, 933–938.
| Evolutionary trade-offs among decomposers determine responses to nitrogen enrichment.Crossref | GoogleScholarGoogle Scholar |
Wakelin SA, van Koten C, O’Callaghan M, Brown M (2013) Physicochemical properties of 50 New Zealand pasture soils: a starting point for assessing and managing soil microbial resources. New Zealand Journal of Agricultural Research 56, 248–260.
| Physicochemical properties of 50 New Zealand pasture soils: a starting point for assessing and managing soil microbial resources.Crossref | GoogleScholarGoogle Scholar |
Waldrop MP, Firestone MK (2004) Microbial community utilization of recalcitrant and simple carbon compounds: impact of oak-woodland plant communities. Oecologia 138, 275–284.
| Microbial community utilization of recalcitrant and simple carbon compounds: impact of oak-woodland plant communities.Crossref | GoogleScholarGoogle Scholar |
West AW, Sparling GP (1986) Modifications to the substrate-induced respiration method to permit measurement of microbial biomass in soils of differing water contents. Journal of Microbiological Methods 5, 177–189.
| Modifications to the substrate-induced respiration method to permit measurement of microbial biomass in soils of differing water contents.Crossref | GoogleScholarGoogle Scholar |
Whitaker J, Ostle N, Nottingham AT, Ccahuana A, Salinas N, Bardgett RD, Meir P, McNamas NP (2014) Microbial community composition explains soil respiration responses to changing carbon inputs along an Andes-to-Amazon elevation gradient. Journal of Ecology 102, 1058–1071.
| Microbial community composition explains soil respiration responses to changing carbon inputs along an Andes-to-Amazon elevation gradient.Crossref | GoogleScholarGoogle Scholar |
White DC, Davis WM, Nickels JS, King JD, Bobbie RJ (1979) Determination of the sedimentary microbial biomass by extractable lipid phosphate. Oecologia 40, 51–62.
| Determination of the sedimentary microbial biomass by extractable lipid phosphate.Crossref | GoogleScholarGoogle Scholar |
Williams MA, Rice CW (2007) Seven years of enhanced water availability influences the physiological, structural, and functional attributes of a soil microbial community. Applied Soil Ecology 35, 535–545.
| Seven years of enhanced water availability influences the physiological, structural, and functional attributes of a soil microbial community.Crossref | GoogleScholarGoogle Scholar |
Zelles L (1999) Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review. Biology and Fertility of Soils 29, 111–129.
| Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review.Crossref | GoogleScholarGoogle Scholar |