Impacts of management on soil biota in Vertosols supporting the broadacre grains industry in northern Australia
M. Bell A F , N. Seymour B , G. R. Stirling C , A. M. Stirling C , L. Van Zwieten D , T. Vancov D , G. Sutton E and P. Moody FA Queensland Department of Primary Industries and Fisheries, J. Bjelke-Petersen Research Station, PO Box 23, Kingaroy, Qld 4610, Australia.
B Queensland Department of Primary Industries and Fisheries, Leslie Research Centre, PO Box 2282, Toowoomba, Qld 4350, Australia.
C Biological Crop Protection Pty Ltd, 3601 Moggill Rd, Moggill, Qld 4070, Australia.
D New South Wales Department of Primary Industries, Wollongbar Agricultural Institute, 1243 Bruxner Highway, Wollongbar, NSW 2477, Australia.
E Landmark Pty Ltd, Dalby, Qld 4405, Australia.
F Queensland Department of Natural Resources, Mines and Water, Meiers Rd, Indooroopilly, Qld 4068, Australia.
G Corresponding author. Email: Mike.Bell@dpi.qld.gov.au
Australian Journal of Soil Research 44(4) 433-451 https://doi.org/10.1071/SR05137
Submitted: 16 September 2005 Accepted: 15 May 2006 Published: 27 June 2006
Abstract
The grain-producing regions of northern New South Wales and southern and central Queensland are characterised by cropping systems that are strongly dependent on stored soil moisture rather than in-crop rainfall, and tillage systems that are increasingly reliant on zero or minimum tillage. Crops are grown relatively infrequently and crop rotations are dominated by winter and summer grains (wheat [Triticum aestivum L.] and sorghum [Sorghum bicolor L. Moench], respectively), with smaller areas of grain legumes and cotton (Gossypium hirsutum L.). The grey, black, and brown Vertosols represent the more productive soils in the region under rainfed cropping, and are the focus of work reported in this study.
Soil samples were collected from surface soils (0–0.30 m) across the region, utilising sites of long term tillage and residue management studies, fertiliser trials, and commercial fields to enable an assessment of the impact of various management practices on soil biological properties. A number of biological and biochemical parameters were measured (microbial biomass C, total organic C and labile C fractions, total C and N, microbial activity using FDA, cellulase activity, free living nematodes, total DNA and fatty acid profiles), and the response of wheat, sorghum, and chickpea (Cicer arietinum L.) to steam pasteurisation was assessed in glasshouse bioassays. The objective was to obtain an indication of the biological status of grain-growing soils and assess the impact of biological constraints in soils from different regions and management systems.
Results showed that biological activity in cropped soils was consistently low relative to other land uses in northern Australia, with management practices like stubble retention and adoption of zero tillage producing relatively small benefits. In the case of zero tillage, many of these benefits were confined to the top 0.05 m of the soil profile. Fallowing to recharge soil moisture reserves significantly reduced all soil biological parameters, while pasture leys produced consistent positive benefits. Breaking a long fallow with a short duration grain or brown manure crop significantly moderated the negative effects of a long bare fallow on soil biology. Use of inorganic N and P fertilisers produced minimal effects on soil biota, with the exception of one component of the free-living nematode community (the Dorylaimida).
The glasshouse bioassays provided consistent evidence that soil biota were constraining growth of both grain crops (sorghum and wheat) but not the grain legume (chickpea). The biota associated with this constraint have not yet been identified, but effects were consistent across the region and were not associated with the presence of any known pathogen or correlated with any of the measured soil biological or biochemical properties. Further work to confirm the existence and significance of these constraints under field conditions is needed.
None of the measured biological or biochemical parameters consistently changed in response to management practices, while conflicting conclusions could sometimes be drawn from different measurements on the same soil sample. This highlights the need for further work on diagnostic tools to quantify soil biological communities, and suggests there is no clear link between measured changes in soil biological communities and economically or ecologically important soil attributes.
Additional keywords: plant growth, wheat, sorghum, chickpea, bioassays.
Acknowledgments
The authors wish to acknowledge the assistance of Mrs Jan Wood and Mr John Cooper in the collection of field samples and the conduct of glasshouse trials and laboratory sample preparation. Matthew Ayres is acknowledged for his input into the soil analyses. We would also like to thank the many land owners and consultants (in particular Sid Cook and Jim Hunt from Landmark and Peter Mackenzie from AgVance) for access to properties across the region. The funding support of GRDC is also gratefully acknowledged.
Arias ME,
Gonzalez-Perez JA,
Gonzalez-Vila FJ, Ball AS
(2005) Soil health—a new challenge for microbiologists and chemists. International Microbiology 8, 13–21.
| PubMed |
Bell MJ,
Bridge BJ,
Harch GR, Orange DN
(1997) Physical rehabilitation of degraded Krasnozems using ley pastures. Australian Journal of Soil Research 35, 1093–1113.
| Crossref | GoogleScholarGoogle Scholar |
Bell MJ,
Moody PW,
Yo SA, Connolly RD
(1999) Using active fractions of soil organic matter as indicators of the sustainability of Ferrosol farming systems. Australian Journal of Soil Research 37, 279–287.
| Crossref | GoogleScholarGoogle Scholar |
Biederbeck VO,
Campbell CA,
Ukaintetz H,
Curtin D, Bouman OT
(1996) Soil microbial and biochemical properties after ten years fertilisation with urea and anhydrous ammonia. Canadian Journal of Soil Science 76, 7–14.
Blair GJ,
Lefroy RDB, Lisle L
(1995) Soil carbon fractions based on their degree of oxidation, and the development of a carbon management index for agricultural systems. Australian Journal of Agricultural Research 46, 1459–1466.
| Crossref | GoogleScholarGoogle Scholar |
Burgess LW,
Backhouse D,
Swan LJ, Esdaile RJ
(1996) Control of Fusarium crown rot of wheat by late stubble burning and rotation with sorghum. Australasian Plant Pathology 25, 229–233.
| Crossref | GoogleScholarGoogle Scholar |
Cavigelli MA,
Robertson GP, Klug MJ
(1995) Fatty acid methyl ester (FAME) profiles as measures of soil microbial community structure. Plant and Soil 170, 99–113.
| Crossref | GoogleScholarGoogle Scholar |
Dalal RC, Chan KY
(2001) Soil organic matter in rainfed cropping systems of the Australian cereal belt. Australian Journal of Soil Research 39, 435–464.
| Crossref | GoogleScholarGoogle Scholar |
Dalal RC, Mayer RJ
(1987) Long term trends in fertility of soils under continuous cultivation and cereal cropping in southern Queensland. VII. Dynamics of nitrogen mineralisation potentials and microbial biomass. Australian Journal of Soil Research 25, 461–472.
| Crossref | GoogleScholarGoogle Scholar |
Dalal RC,
Strong WM,
Weston EJ,
Cahill MJ,
Cooper JE,
Lehane KJ,
King AJ, Gaffney J
(1994) Evaluation of forage and grain legumes, no-till and fertilisers to restore fertility degraded soils. Transactions of the International Society of Soil Science 5a, 62–74.
Dalal RC,
Strong WM,
Weston EJ,
Cooper JE,
Lehane KJ,
King AJ, Chicken CJ
(1995) Sustaining productivity of a Vertisol at Warra, Queensland, with fertilisers, no-till or legumes. I. Organic matter status. Australian Journal of Experimental Agriculture 35, 903–913.
| Crossref | GoogleScholarGoogle Scholar |
Duczek LJ, Wildermuth GB
(1991) Populations of amoebae which feed on conidia and hyphae of Bipolaris sorokiniana in Queensland soils. Australasian Plant Pathology 20, 81–85.
| Crossref | GoogleScholarGoogle Scholar |
Felton WL,
Marcellos H, Martin RJ
(1995) A comparison of three fallow management strategies for the long term productivity of wheat in northern New South Wales. Australian Journal of Experimental Agriculture 35, 915–921.
| Crossref | GoogleScholarGoogle Scholar |
Fontvieille DA,
Outaguerouine A, Thevenot DR
(1991) Fluorescein diacetate hydrolysis as a measure of microbial activity in aquatic systems: application to activated sludges. Environmental Technology 13, 531–540.
Gardner PA,
Angus JF,
Pitson GD, Wong PTW
(1998) A comparison of six methods to control take-all in wheat. Australian Journal of Agricultural Research 49, 1225–1240.
| Crossref | GoogleScholarGoogle Scholar |
Graham JH,
Hodge NC, Morton JB
(1995) Fatty acid methyl ester profiles for characterisation of Glomalean fungi and their endomycorrhizae. Applied and Environmental Microbiology 61, 58–64.
| PubMed |
Islam KR, Weil RR
(1998) Microwave irradiation of soil for routine measurement of microbial biomass carbon. Biology and Fertility of Soils 27, 408–416.
| Crossref | GoogleScholarGoogle Scholar |
Johnson MJ,
Lee KY, Scow KM
(2003) DNA fingerprinting reveals links among agricultural crops, soil properties, and composition of soil microbial communities. Geoderma 114, 279–303.
| Crossref | GoogleScholarGoogle Scholar |
Kirkegaard JA,
Hocking PJ,
Angus JF,
Howe GN, Gardner PA
(1997) Comparison of canola, Indian mustard and Linola in two contrasting environments. II. Break crop and nitrogen effects on subsequent wheat crops. Field Crops Research 52, 179–191.
| Crossref | GoogleScholarGoogle Scholar |
Neate SM
(1987) Plant debris in soil as a source of inoculum of Rhizoctonias in wheat. Transactions of the British Mycological Society 88, 157–162.
Olsson PA
(1999) Signature fatty acids provide tools for determination of the distribution and interactions of mycorrhizal fungi in soil. FEMS Microbiology Ecology 29, 303–310.
| Crossref |
Pankhurst CE,
Blair BL,
Magarey RC,
Stirling GR,
Bell MJ, Garside AL
(2005) Effect of rotation breaks and organic amendments on the capacity of soils to develop biological suppression towards soil organisms associated with yield decline of sugarcane. Applied Soil Ecology 28, 271–282.
| Crossref | GoogleScholarGoogle Scholar |
Pankhurst CE,
Hawke BG,
McDonald HJ,
Kirby CA,
Buckerfield JC,
Michelsen P,
O’Brien KA,
Gupta VVSR, Doube BM
(1995) Evaluation of soil biological properties as potential bioindicators of soil health. Australian Journal of Experimental Agriculture 35, 1015–1028.
| Crossref |
Pankhurst CE,
McDonald HJ,
Hawke BG, Kirby JM
(2002) Effect of tillage and stubble management on chemical and microbiological properties and the development of suppression towards cereal root disease in soils from two sites in NSW, Australia. Soil Biology and Biochemistry 34, 833–840.
| Crossref | GoogleScholarGoogle Scholar |
Pankhurst CE,
Yu S,
Hawke BG, Harch BD
(2001) Capacity of fatty acid profiles and substrate utilization patterns to describe differences in soil microbial communities associated with increased salinity or alkalinity at three locations in South Australia. Biology and Fertility of Soils 33, 204–217.
| Crossref | GoogleScholarGoogle Scholar |
Radford B,
Key AJ,
Robertson LN, Thomas GA
(1995) Conservation tillage increases soil water storage, soil animal populations, grain yield, and response to fertiliser in the semi-arid tropics. Australian Journal of Experimental Agriculture 35, 223–232.
| Crossref | GoogleScholarGoogle Scholar |
Roper MM, Gupta VVSR
(1995) Management factors and soil biota. Australian Journal of Soil Research 33, 321–339.
| Crossref | GoogleScholarGoogle Scholar |
Roper MM,
Turpin JE, Thompson JP
(1994) Nitrogenase activity (C2H2 reduction) by free-living bacteria in soil in a long-term tillage and stubble management experiment on a vertisol. Soil Biology and Biochemistry 26, 1087–1091.
| Crossref | GoogleScholarGoogle Scholar |
Rovira AD
(1990) The impact of soil and crop management practices on soil-borne root diseases and wheat yields. Soil Use and Management 6, 195–200.
Rowland LJ, Nguyen B
(1993) Use of polyethylene-glycol for purification of DNA from leaf tissue of woody plants. BioTechniques 14, 734–736.
| PubMed |
Sarathchandra SU,
Ghani A,
Yeates GW,
Burch G, Cox NR
(2001) Effect of nitrogen and phosphate fertilisers on microbial and nematode diversity in pasture soils. Soil Biology and Biochemistry 33, 953–964.
| Crossref | GoogleScholarGoogle Scholar |
Stewart JB,
Moran CJ, Wood JT
(1999) Macropore sheath: quantification of plant root and soil macropore association. Plant and Soil 211, 59–67.
| Crossref | GoogleScholarGoogle Scholar |
Stirling GR, Lodge GM
(2005) A survey of Australian temperate pastures in summer and winter rainfall zones: soil nematodes, chemical and biochemical properties. Australian Journal of Soil Research 43, 887–904.
| Crossref | GoogleScholarGoogle Scholar |
Stirling GR,
Blair BL,
Pattemore JA,
Garside AL, Bell MJ
(2001) Changes in nematode populations on sugarcane following fallow, fumigation and crop rotation, and implications for the role of nematodes in yield decline. Australasian Plant Pathology 30, 323–335.
| Crossref | GoogleScholarGoogle Scholar |
Tenuta M, Ferris H
(2004) Sensitivity of nematode life-history groups to ions and osmostic tensions of nitrogenous solutions. Journal of Nematology 36, 85–94.
Thompson JP
(1987) Decline of vesicular-arbuscular mycorrhizae in long fallow disorder of field crops and its expression in phosphorus deficiency of sunflower. Australian Journal of Agricultural Research 38, 847–862.
| Crossref | GoogleScholarGoogle Scholar |
Thompson JP
(1994) Inoculation with vesicular-arbuscular mycorrhizal fungi from cropped soil overcomes long-fallow disorder of linseed (Linum usitatissimum L.) by improving P and Zn uptake. Soil Biology and Biochemistry 26, 1133–1143.
| Crossref | GoogleScholarGoogle Scholar |
Thompson JP,
Brennan PS,
Clewett TG,
Sheedy JG, Seymour NP
(1999) Progress in breeding wheat for tolerance and resistance to root-lesion nematode (Pratylenchus thornei). Australasian Plant Pathology 28, 45–52.
| Crossref | GoogleScholarGoogle Scholar |
Thompson JP,
Mackenzie J, Amos R
(1995) Root-lesion nematode (Pratylenchus thornei) limits response of wheat not barley to stored moisture in the Hermitage long-term tillage trial. Australian Journal of Experimental Agriculture 35, 1049–1055.
| Crossref | GoogleScholarGoogle Scholar |
Thoss V,
Baird MS,
Lock MA, Courty PV
(2002) Quantifying the phenolic content of freshwaters using simple assays with different underlying reaction mechanisms. Journal of Environmental Monitoring 4, 270–275.
| Crossref | GoogleScholarGoogle Scholar | PubMed |
Whitehead AG, Hemming JR
(1965) A comparison of some quantitative methods of extracting some small vermiform nematodes from soil. Annals of Applied Biology 55, 25–38.
Wilson-Rummenie AC,
Radford BJ,
Robertson LN,
Simpson GB, Bell KL
(1999) Reduced tillage increases population density of soil macrofauna in a semi-arid environment in central Queensland. Environmental Entomology 28, 163–172.
Yeates GW
(2003) Nematodes as soil indicators:functional and biodiversity aspects. Biology and Fertility of Soils 37, 199–210.
Yeates GW,
Bongers T,
de Goede RGM,
Freckman DW, Georgieva SS
(1993) Feeding habits in soil nematode families and genera—an outline for soil ecologists. Journal of Nematology 25, 315–331.
Yeates GW, King KL
(1997) Soil nematodes as indicators of the effect of management in grasslands in the New England Tablelands (NSW): Comparison of native and improved grasslands. Pedobiologia 41, 526–536.
Zak DR,
Ringelberg DB,
Randlett DL,
White DC, Curtis PS
(1996) Soil microbial communities beneath Populus grandidentata grown under elevated atmospheric CO2. Ecological Applications 6, 257–262.
| Crossref | GoogleScholarGoogle Scholar |
Zelles L
(1999) Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review. Biology and Fertility of Soils 29, 111–129.
| Crossref | GoogleScholarGoogle Scholar |
Zhou J,
Bruns MA, Tiedje JM
(1996) DNA recovery from soils of diverse composition. Applied and Environmental Microbiology 62, 316–322.
| PubMed |