Maternal DDB1 regulates apoptosis and lineage differentiation in porcine preimplantation embryos
Biao Ding A # , Di Gao B # , Xuegu Wang A , Lei Liu A , Junpei Sun A , Meng Liang C , Fengrui Wu D , Yong Liu D , Yunhai Zhang B , Xiang Li A * and Wenyong Li D *A Reproductive Medicine Center, The First Affiliated Hospital of Bengbu Medical College, Bengbu 233004, China.
B College of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
C School of Life Science, Bengbu Medical College, Bengbu 233030, China.
D Anhui Province Key Laboratory of Embryo Development and Reproductive Regulation, Fuyang Normal University, Fuyang 236041, China.
Handling Editor: Ryan Cabot
Reproduction, Fertility and Development 34(12) 844-854 https://doi.org/10.1071/RD22028
Published online: 21 June 2022
© 2022 The Author(s) (or their employer(s)). Published by CSIRO Publishing. This is an open access article distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND)
Abstract
Context: Maternal-effect genes (MEGs) play a critical role in modulating both cellular and molecular biology events in preimplantation embryonic development. Damage-specific DNA binding protein 1 (DDB1) is a gene that participates in meiotic resumption, ovulation, and embryonic stem cell maintenance. Its function in preimplantation development is not well-studied.
Aims: We aimed to explore the expression pattern, genomic heritage, and potential molecular mechanisms of DDB1 in preimplantation embryos in porcine.
Methods: In this study, RNA interference, microinjection, RT-qPCR, immunofluorescence staining and single-cell RNA sequencing were used to explore the molecular function of DDB1 in porcine preimplantation embryos.
Key results: DDB1 was found to be expressed in germinal vesicle (GV) and Meiosis II (MII) oocytes and in preimplantation embryos. We confirmed it is a MEG. DDB1-deficient blastocysts had a significantly reduced number of trophectoderm cells, an increased apoptotic cell number and increased apoptosis index. According to a next-generation sequencing (NGS) analysis, 236 genes (131 upregulated and 105 downregulated) significantly changed in the DDB1-deficient morula. The myeloid leukaemia factor 1 (MLF1) and yes-associated protein 1 (YAP1) expressions were significantly upregulated and downregulated respectively, in the DDB1-deficient morula. In combination with the decreased expression of TEAD4, CDX2, GATA3, OCT4, and NANOG and the increased expression of SOX2 in the blastocyst, DDB1 may play a role in determining lineage differentiation and pluripotency maintenance.
Conclusions: DDB1 is a MEG and it plays a crucial role in porcine preimplantation embryonic development.
Implications: This study provides a theoretical basis for further understanding the molecular mechanisms of preimplantation embryo development.
Keywords: blastocyst, cellular apoptosis, DDB1, embryo, lineage differentiation, maternal-effect gene, porcine, preimplantation development.
References
Antunes, G, Chaveiro, A, Santos, P, Marques, A, Jin, HS, and Moreira da Silva, F (2010). Influence of apoptosis in bovine embryo’s development. Reproduction in Domestic Animals 45, 26–32.| Influence of apoptosis in bovine embryo’s development.Crossref | GoogleScholarGoogle Scholar | 19055557PubMed |
Bou, G, Liu, S, Sun, M, Zhu, J, Xue, B, Guo, J, Zhao, Y, Qu, B, Weng, X, Wei, Y, Lei, L, and Liu, Z (2017). CDX2 is essential for cell proliferation and polarity in porcine blastocysts. Development 144, 1296–1306.
| CDX2 is essential for cell proliferation and polarity in porcine blastocysts.Crossref | GoogleScholarGoogle Scholar | 28219949PubMed |
Boyer, LA, Lee, TI, Cole, MF, Johnstone, SE, Levine, SS, Zucker, JP, Guenther, MG, Kumar, RM, Murray, HL, Jenner, RG, Gifford, DK, Melton, DA, Jaenisch, R, and Young, RA (2005). Core transcriptional regulatory circuitry in human embryonic stem cells. Cell 122, 947–956.
| Core transcriptional regulatory circuitry in human embryonic stem cells.Crossref | GoogleScholarGoogle Scholar | 16153702PubMed |
Cao, S, Han, J, Wu, J, Li, Q, Liu, S, Zhang, W, Pei, Y, Ruan, X, Liu, Z, Wang, X, Lim, B, and Li, N (2014). Specific gene-regulation networks during the pre-implantation development of the pig embryo as revealed by deep sequencing. BMC Genomics 15, 4.
| Specific gene-regulation networks during the pre-implantation development of the pig embryo as revealed by deep sequencing.Crossref | GoogleScholarGoogle Scholar | 24383959PubMed |
Cao, Z, Xu, T, Tong, X, Wang, Y, Zhang, D, Gao, D, Zhang, L, Ning, W, Qi, X, Ma, Y, Yu, T, Knott, JG, and Zhang, Y (2019). Maternal yes-associated protein participates in porcine blastocyst development via modulation of trophectoderm epithelium barrier function. Cells 8, 1606.
| Maternal yes-associated protein participates in porcine blastocyst development via modulation of trophectoderm epithelium barrier function.Crossref | GoogleScholarGoogle Scholar |
Chazaud, C, and Yamanaka, Y (2016). Lineage specification in the mouse preimplantation embryo. Development 143, 1063–1074.
| Lineage specification in the mouse preimplantation embryo.Crossref | GoogleScholarGoogle Scholar | 27048685PubMed |
Chu, G, and Yang, W (2008). Here comes the sun: recognition of UV-damaged DNA. Cell 135, 1172–1174.
| Here comes the sun: recognition of UV-damaged DNA.Crossref | GoogleScholarGoogle Scholar | 19109889PubMed |
Cockburn, K, Biechele, S, Garner, J, and Rossant, J (2013). The Hippo pathway member Nf2 is required for inner cell mass specification. Current Biology 23, 1195–1201.
| The Hippo pathway member Nf2 is required for inner cell mass specification.Crossref | GoogleScholarGoogle Scholar | 23791728PubMed |
de Vries, WN, Evsikov, AV, Haac, BE, Fancher, KS, Holbrook, AE, Kemler, R, Solter, D, and Knowles, BB (2004). Maternal β-catenin and E-cadherin in mouse development. Development 131, 4435–4445.
| Maternal β-catenin and E-cadherin in mouse development.Crossref | GoogleScholarGoogle Scholar | 15306566PubMed |
Ding, B, Cao, Z, Hong, R, Li, H, Zuo, X, Luo, L, Li, Y, Huang, W, Li, W, Zhang, K, and Zhang, Y (2017). WDR5 in porcine preimplantation embryos: expression, regulation of epigenetic modifications and requirement for early development. Biology of Reproduction 96, 758–771.
| WDR5 in porcine preimplantation embryos: expression, regulation of epigenetic modifications and requirement for early development.Crossref | GoogleScholarGoogle Scholar | 28379447PubMed |
Funaya, S, Ooga, M, Suzuki, MG, and Aoki, F (2018). Linker histone H1FOO regulates the chromatin structure in mouse zygotes. FEBS Letters 592, 2414–2424.
| Linker histone H1FOO regulates the chromatin structure in mouse zygotes.Crossref | GoogleScholarGoogle Scholar | 29963710PubMed |
Gao, J, Buckley, SM, Cimmino, L, Guillamot, M, Strikoudis, A, Cang, Y, Goff, SP, and Aifantis, I (2015). The CUL4-DDB1 ubiquitin ligase complex controls adult and embryonic stem cell differentiation and homeostasis. eLife 4, e07539.
| The CUL4-DDB1 ubiquitin ligase complex controls adult and embryonic stem cell differentiation and homeostasis.Crossref | GoogleScholarGoogle Scholar | 26613412PubMed |
Gao, D, Xu, T, Qi, X, Ning, W, Ren, S, Ru, Z, Ji, K, Ma, Y, Yu, T, Li, Y, Cao, Z, and Zhang, Y (2020). CLAUDIN7 modulates trophectoderm barrier function to maintain blastocyst development in pigs. Theriogenology 158, 346–357.
| CLAUDIN7 modulates trophectoderm barrier function to maintain blastocyst development in pigs.Crossref | GoogleScholarGoogle Scholar | 33038820PubMed |
Goissis, MD, and Cibelli, JB (2014). Functional characterization of CDX2 during bovine preimplantation development in vitro. Molecular Reproduction and Development 81, 962–970.
| Functional characterization of CDX2 during bovine preimplantation development in vitro.Crossref | GoogleScholarGoogle Scholar | 25251051PubMed |
Hamatani, T, Carter, MG, Sharov, AA, and Ko, MSH (2004). Dynamics of global gene expression changes during mouse preimplantation development. Developmental Cell 6, 117–131.
| Dynamics of global gene expression changes during mouse preimplantation development.Crossref | GoogleScholarGoogle Scholar | 14723852PubMed |
Hsu, CC, Lin, EC, Chen, SC, Huang, SC, Liu, BH, Yu, YH, Chen, CC, Yang, CC, Lien, CY, Wang, YH, Liu, CW, Mersmann, HJ, Cheng, WTK, and Ding, ST (2012). Differential gene expression between the porcine morula and blastocyst. Reproduction in Domestic Animals 47, 69–81.
| Differential gene expression between the porcine morula and blastocyst.Crossref | GoogleScholarGoogle Scholar | 21599764PubMed |
Hu, Z, Holzschuh, J, and Driever, W (2015). Loss of DDB1 leads to transcriptional p53 pathway activation in proliferating cells, cell cycle deregulation, and apoptosis in zebrafish embryos. PLoS ONE 10, e0134299.
| Loss of DDB1 leads to transcriptional p53 pathway activation in proliferating cells, cell cycle deregulation, and apoptosis in zebrafish embryos.Crossref | GoogleScholarGoogle Scholar | 26225764PubMed |
Iovine, B, Iannella, ML, and Bevilacqua, MA (2011). Damage-specific DNA binding protein 1 (DDB1): a protein with a wide range of functions. The International Journal of Biochemistry & Cell Biology 43, 1664–1667.
| Damage-specific DNA binding protein 1 (DDB1): a protein with a wide range of functions.Crossref | GoogleScholarGoogle Scholar |
Kim, J, Zhao, H, Dan, J, Kim, S, Hardikar, S, Hollowell, D, Lin, K, Lu, Y, Takata, Y, Shen, J, and Chen, T (2016). Maternal Setdb1 is required for meiotic progression and preimplantation development in mouse. PLoS Genetics 12, e1005970.
| Maternal Setdb1 is required for meiotic progression and preimplantation development in mouse.Crossref | GoogleScholarGoogle Scholar | 27070551PubMed |
Kopp, JL, Ormsbee, BD, Desler, M, and Rizzino, A (2008). Small increases in the level of Sox2 trigger the differentiation of mouse embryonic stem cells. Stem Cells 26, 903–911.
| Small increases in the level of Sox2 trigger the differentiation of mouse embryonic stem cells.Crossref | GoogleScholarGoogle Scholar | 18238855PubMed |
Larue, L, Ohsugi, M, Hirchenhain, J, and Kemler, R (1994). E-cadherin null mutant embryos fail to form a trophectoderm epithelium. Proceedings of the National Academy of Sciences of the United States of America 91, 8263–8267.
| E-cadherin null mutant embryos fail to form a trophectoderm epithelium.Crossref | GoogleScholarGoogle Scholar | 8058792PubMed |
Lee, W-J, Jang, S-J, Lee, S-C, Park, J-S, Jeon, R-H, Subbarao, RB, Bharti, D, Shin, J-K, Park, B-W, and Rho, G-J (2017). Selection of reference genes for quantitative real-time polymerase chain reaction in porcine embryos. Reproduction, Fertility and Development 29, 357–367.
| Selection of reference genes for quantitative real-time polymerase chain reaction in porcine embryos.Crossref | GoogleScholarGoogle Scholar |
Li, L, Zheng, P, and Dean, J (2010). Maternal control of early mouse development. Development 137, 859–870.
| Maternal control of early mouse development.Crossref | GoogleScholarGoogle Scholar | 20179092PubMed |
Li, S, Shi, Y, Dang, Y, Luo, L, Hu, B, Wang, S, Wang, H, and Zhang, K (2021). NOTCH signaling pathway is required for bovine early embryonic development. Biology of Reproduction 105, 332–344.
| NOTCH signaling pathway is required for bovine early embryonic development.Crossref | GoogleScholarGoogle Scholar | 33763686PubMed |
Liu, S, Bou, G, Zhao, J, Guo, S, Guo, J, Weng, X, Yin, Z, and Liu, Z (2018). Asynchronous CDX2 expression and polarization of porcine trophoblast cells reflects a species-specific trophoderm lineage determination progress model. Molecular Reproduction and Development 85, 590–598.
| Asynchronous CDX2 expression and polarization of porcine trophoblast cells reflects a species-specific trophoderm lineage determination progress model.Crossref | GoogleScholarGoogle Scholar | 29719081PubMed |
Maître, J-L (2017). Mechanics of blastocyst morphogenesis. Biology of the Cell 109, 323–338.
| Mechanics of blastocyst morphogenesis.Crossref | GoogleScholarGoogle Scholar | 28681376PubMed |
Mateusen, B, Van Soom, A, Maes, DGD, Donnay, I, Duchateau, L, and Lequarre, A-S (2005). Porcine embryo development and fragmentation and their relation to apoptotic markers: a cinematographic and confocal laser scanning microscopic study. Reproduction 129, 443–452.
| Porcine embryo development and fragmentation and their relation to apoptotic markers: a cinematographic and confocal laser scanning microscopic study.Crossref | GoogleScholarGoogle Scholar | 15798019PubMed |
Nichols, J, and Smith, A (2012). Pluripotency in the embryo and in culture. Cold Spring Harbor Perspectives in Biology 4, a008128.
| Pluripotency in the embryo and in culture.Crossref | GoogleScholarGoogle Scholar | 22855723PubMed |
Nishioka, N, Inoue, K-i, Adachi, K, Kiyonari, H, Ota, M, Ralston, A, Yabuta, N, Hirahara, S, Stephenson, RO, Ogonuki, N, Makita, R, Kurihara, H, Morin-Kensicki, EM, Nojima, H, Rossant, J, Nakao, K, Niwa, H, and Sasaki, H (2009). The Hippo signaling pathway components Lats and Yap pattern Tead4 activity to distinguish mouse trophectoderm from inner cell mass. Developmental Cell 16, 398–410.
| The Hippo signaling pathway components Lats and Yap pattern Tead4 activity to distinguish mouse trophectoderm from inner cell mass.Crossref | GoogleScholarGoogle Scholar | 19289085PubMed |
Pan, G, and Thomson, JA (2007). Nanog and transcriptional networks in embryonic stem cell pluripotency. Cell Research 17, 42–49.
| Nanog and transcriptional networks in embryonic stem cell pluripotency.Crossref | GoogleScholarGoogle Scholar | 17211451PubMed |
Ralston, A, Cox, BJ, Nishioka, N, Sasaki, H, Chea, E, Rugg-Gunn, P, Guo, G, Robson, P, Draper, JS, and Rossant, J (2010). Gata3 regulates trophoblast development downstream of Tead4 and in parallel to Cdx2. Development 137, 395–403.
| Gata3 regulates trophoblast development downstream of Tead4 and in parallel to Cdx2.Crossref | GoogleScholarGoogle Scholar | 20081188PubMed |
Rangrez, AY, Pott, J, Kluge, A, Frauen, R, Stiebeling, K, Hoppe, P, Sossalla, S, Frey, N, and Frank, D (2017). Myeloid leukemia factor-1 is a novel modulator of neonatal rat cardiomyocyte proliferation. Biochimica et Biophysica Acta (BBA) – Molecular Cell Research 1864, 634–644.
| Myeloid leukemia factor-1 is a novel modulator of neonatal rat cardiomyocyte proliferation.Crossref | GoogleScholarGoogle Scholar |
Roovers, EF, Rosenkranz, D, Mahdipour, M, Han, CT, He, NN, Chuva de Sousa Lopes, SM, van der Westerlaken, LAJ, Zischler, H, Butter, F, Roelen, BAJ, and Ketting, RF (2015). Piwi proteins and piRNAs in mammalian oocytes and early embryos. Cell Report 10, 2069–2082.
| Piwi proteins and piRNAs in mammalian oocytes and early embryos.Crossref | GoogleScholarGoogle Scholar |
Saini, D, and Yamanaka, Y (2018). Cell polarity-dependent regulation of cell allocation and the first lineage specification in the preimplantation mouse embryo. Current Topics in Developmental Biology 128, 11–35.
| Cell polarity-dependent regulation of cell allocation and the first lineage specification in the preimplantation mouse embryo.Crossref | GoogleScholarGoogle Scholar | 29477161PubMed |
Sasaki, H (2015). Position- and polarity-dependent Hippo signaling regulates cell fates in preimplantation mouse embryos. Seminars in Cell & Developmental Biology 47–48, 80–87.
| Position- and polarity-dependent Hippo signaling regulates cell fates in preimplantation mouse embryos.Crossref | GoogleScholarGoogle Scholar |
Shi, G, and Jin, Y (2010). Role of Oct4 in maintaining and regaining stem cell pluripotency. Stem Cell Research & Therapy 1, 39.
| Role of Oct4 in maintaining and regaining stem cell pluripotency.Crossref | GoogleScholarGoogle Scholar |
Strumpf, D, Mao, C-A, Yamanaka, Y, Ralston, A, Chawengsaksophak, K, Beck, F, and Rossant, J (2005). Cdx2 is required for correct cell fate specification and differentiation of trophectoderm in the mouse blastocyst. Development 132, 2093–2102.
| Cdx2 is required for correct cell fate specification and differentiation of trophectoderm in the mouse blastocyst.Crossref | GoogleScholarGoogle Scholar | 15788452PubMed |
Tejomurtula, J, Lee, KB, Tripurani, SK, Smith, GW, and Yao, J (2009). Role of importin alpha8, a new member of the importin alpha family of nuclear transport proteins, in early embryonic development in cattle. Biology of Reproduction 81, 333–342.
| Role of importin alpha8, a new member of the importin alpha family of nuclear transport proteins, in early embryonic development in cattle.Crossref | GoogleScholarGoogle Scholar | 19420384PubMed |
Su, RW, Jia, B, Ni, H, Lei, W, Yue, SL, Feng, XH, Deng, WB, Liu, JL, Zhao, ZA, Wang, TS, and Yang, ZM (2012). Junctional adhesion molecule 2 mediates the interaction between hatched blastocyst and luminal epithelium: induction by progesterone and LIF. PLoS One 7, e34325.
| Junctional adhesion molecule 2 mediates the interaction between hatched blastocyst and luminal epithelium: induction by progesterone and LIF.Crossref | GoogleScholarGoogle Scholar | 22511936PubMed |
Uh K, Lee K (2017) Use of chemicals to inhibit DNA replication, transcription, and protein synthesis to study zygotic genome activation. In ‘Methods in molecular biology. Vol. 1605’. (Ed. K Lee) pp. 191–205. (Humana Press: New York, NY)
| Crossref |
Wang, Y, Yuan, P, Yan, Z, Yang, M, Huo, Y, Nie, Y, Zhu, X, Qiao, J, and Yan, L (2021). Single-cell multiomics sequencing reveals the functional regulatory landscape of early embryos. Nature Communications 12, 1247.
| Single-cell multiomics sequencing reveals the functional regulatory landscape of early embryos.Crossref | GoogleScholarGoogle Scholar | 33623021PubMed |
Wu, X, Viveiros, MM, Eppig, JJ, Bai, Y, Fitzpatrick, SL, and Matzuk, MM (2003). Zygote arrest 1 (Zar1) is a novel maternal-effect gene critical for the oocyte-to-embryo transition. Nature Genetics 33, 187–191.
| Zygote arrest 1 (Zar1) is a novel maternal-effect gene critical for the oocyte-to-embryo transition.Crossref | GoogleScholarGoogle Scholar | 12539046PubMed |
Wu, G, Gentile, L, Fuchikami, T, Sutter, J, Psathaki, K, Esteves, TC, Araúzo-Bravo, MJ, Ortmeier, C, Verberk, G, Abe, K, and Schöler, HR (2010). Initiation of trophectoderm lineage specification in mouse embryos is independent of Cdx2. Development 137, 4159–4169.
| Initiation of trophectoderm lineage specification in mouse embryos is independent of Cdx2.Crossref | GoogleScholarGoogle Scholar | 21098565PubMed |
Xu, Q, Wang, F, Xiang, Y, Zhang, X, Zhao, Z-A, Gao, Z, Liu, W, Lu, X, Liu, Y, Yu, X-J, Wang, H, Huang, J, Yi, Z, Gao, S, and Li, L (2015). Maternal BCAS2 protects genomic integrity in mouse early embryonic development. Development 142, 3943–3953.
| Maternal BCAS2 protects genomic integrity in mouse early embryonic development.Crossref | GoogleScholarGoogle Scholar | 26428007PubMed |
Yoneda-Kato, N, Tomoda, K, Umehara, M, Arata, Y, and Kato, J-Y (2005). Myeloid leukemia factor 1 regulates p53 by suppressing COP1 via COP9 signalosome subunit 3. The EMBO Journal 24, 1739–1749.
| Myeloid leukemia factor 1 regulates p53 by suppressing COP1 via COP9 signalosome subunit 3.Crossref | GoogleScholarGoogle Scholar | 15861129PubMed |
Yoshioka, K, Suzuki, C, Tanaka, A, Anas, IM-K, and Iwamura, S (2002). Birth of piglets derived from porcine zygotes cultured in a chemically defined medium. Biology of Reproduction 66, 112–119.
| Birth of piglets derived from porcine zygotes cultured in a chemically defined medium.Crossref | GoogleScholarGoogle Scholar | 11751272PubMed |
Yu, C, Zhang, Y-L, Pan, W-W, Li, X-M, Wang, Z-W, Ge, Z-J, Zhou, J-J, Cang, Y, Tong, C, Sun, Q-Y, and Fan, H-Y (2013). CRL4 complex regulates mammalian oocyte survival and reprogramming by activation of TET proteins. Science 342, 1518–1521.
| CRL4 complex regulates mammalian oocyte survival and reprogramming by activation of TET proteins.Crossref | GoogleScholarGoogle Scholar | 24357321PubMed |
Yu, C, Ji, S-Y, Sha, Q-Q, Sun, Q-Y, and Fan, H-Y (2015a). CRL4–DCAF1 ubiquitin E3 ligase directs protein phosphatase 2A degradation to control oocyte meiotic maturation. Nature Communications 6, 8017.
| CRL4–DCAF1 ubiquitin E3 ligase directs protein phosphatase 2A degradation to control oocyte meiotic maturation.Crossref | GoogleScholarGoogle Scholar | 26281983PubMed |
Yu, C, Xu, Y-W, Sha, Q-Q, and Fan, H-Y (2015b). CRL4DCAF1 is required in activated oocytes for follicle maintenance and ovulation. Molecular Human Reproduction 21, 195–205.
| CRL4DCAF1 is required in activated oocytes for follicle maintenance and ovulation.Crossref | GoogleScholarGoogle Scholar | 25371539PubMed |
Zhang, K, and Smith, GW (2015). Maternal control of early embryogenesis in mammals. Reproduction, Fertility and Development 27, 880–896.
| Maternal control of early embryogenesis in mammals.Crossref | GoogleScholarGoogle Scholar |