Free Standard AU & NZ Shipping For All Book Orders Over $80!
Register      Login
Functional Plant Biology Functional Plant Biology Society
Plant function and evolutionary biology
FOREWORD

Plant phenotyping: increasing throughput and precision at multiple scales

Malcolm J. Hawkesford A C and Argelia Lorence B C
+ Author Affiliations
- Author Affiliations

A Rothamsted Research, Harpenden, AL5 2JQ, UK.

B Department of Chemistry and Physics and Arkansas Biosciences Institute, Arkansas State University, PO Box 639, State University, AR 72467, USA.

C Corresponding authors. Email: malcolm.hawkesford@rothamsted.ac.uk; alorence@astate.edu

Functional Plant Biology 44(1) v-vii https://doi.org/10.1071/FPv44n1_FO
Published: 14 December 2016

Abstract

In this special issue of Functional Plant Biology, we present a perspective of the current state of the art in plant phenotyping. The applications of automated and detailed recording of plant characteristics using a range of mostly non-invasive techniques are described. Papers range from tissue scale analysis through to aerial surveying of field trials and include model plant species such as Arabidopsis as well as commercial crops such as sugar beet and cereals. The common denominators are high throughput measurements, data rich analyses often utilising image based data capture, requirements for validation when proxy measurement are employed and in many instances a need to fuse datasets. The outputs are detailed descriptions of plant form and function. The papers represent technological advances and important contributions to basic plant biology, and these studies are commonly multidisciplinary, involving engineers, software specialists and plant physiologists. This is a fast moving area producing large datasets and analytical requirements are often common between very diverse platforms.


References

Acosta-Gamboa LM, Liu S, Langley E, Campbell Z, Castro-Guerrero N, Mendoza-Cózatl D, Lorence A (2017) Moderate to severe water limitation differentially affects the phenome and ionome of Arabidopsis. Functional Plant Biology 44, 94–106.
Moderate to severe water limitation differentially affects the phenome and ionome of Arabidopsis.Crossref | GoogleScholarGoogle Scholar |

Barkla BJ, Rhodes T (2017) Use of infrared thermography for monitoring crassulacean acid metabolism. Functional Plant Biology 44, 46–51.
Use of infrared thermography for monitoring crassulacean acid metabolism.Crossref | GoogleScholarGoogle Scholar |

Bourgault M, James AT, Dreccer MF (2017) Pot size matters revisited: Does container size affect the response to elevated CO2 and our ability to detect genotypic variability in this response in wheat? Functional Plant Biology 44, 52–61.
Pot size matters revisited: Does container size affect the response to elevated CO2 and our ability to detect genotypic variability in this response in wheat?Crossref | GoogleScholarGoogle Scholar |

Dambreville A, Griolet M, Rolland G, Dauzat M, Bédiée A, Balsea C, Muller B, Vile D, Granier C (2017) Phenotyping oilseed rape growth-related traits and their responses to water deficit: the disturbing pot size effect. Functional Plant Biology 44, 35–45.
Phenotyping oilseed rape growth-related traits and their responses to water deficit: the disturbing pot size effect.Crossref | GoogleScholarGoogle Scholar |

Deery D, Jimenez-Berni J, Jones H, Sirault X, Furbank R (2014) Proximal remote sensing buggies and potential applications for field-based phenotyping. Agronomy Journal 4, 349–379.
Proximal remote sensing buggies and potential applications for field-based phenotyping.Crossref | GoogleScholarGoogle Scholar |

Du J, Zhang Y, Guo X, Ma L, Shao M, Pan X, Zhao C (2017) Micron-scale phenotyping quantification and three-dimensional microstructure reconstruction of vascular bundles within maize stalks based on micro-CT scanning. Functional Plant Biology 44, 10–22.
Micron-scale phenotyping quantification and three-dimensional microstructure reconstruction of vascular bundles within maize stalks based on micro-CT scanning.Crossref | GoogleScholarGoogle Scholar |

Duan T, Zheng B, Guo W, Ninomiya S, Guo Y, Chapman SC (2017) Comparison of ground cover estimates from experiment plots in cotton, sorghum and sugarcane based on images and ortho-mosaics captured by UAV. Functional Plant Biology 44, 169–183.
Comparison of ground cover estimates from experiment plots in cotton, sorghum and sugarcane based on images and ortho-mosaics captured by UAV.Crossref | GoogleScholarGoogle Scholar |

Furbank RT, Tester M (2011) Phenomics–technologies to relieve the phenotyping bottleneck. Trends in Plant Science 16, 635–644.
Phenomics–technologies to relieve the phenotyping bottleneck.Crossref | GoogleScholarGoogle Scholar |

Gibbs JA, Pound M, French AP, Wells DM, Murchie E, Pridmore T (2017) Approaches to three-dimensional reconstruction of plant shoot topology and geometry. Functional Plant Biology 44, 62–75.
Approaches to three-dimensional reconstruction of plant shoot topology and geometry.Crossref | GoogleScholarGoogle Scholar |

Gioia T, Galinski A, Lenz H, Muller C, Lentz J, Heinz K, Briese C, Putz A, Fiorani F, Watt M, Schurr U, Nagel KA (2017) GrowScreen-PaGe, a non-invasive, high-throughput phenotyping system based on germination paper to quantify crop phenotypic diversity and plasticity of root traits under varying nutrient supply. Functional Plant Biology 44, 76–93.
GrowScreen-PaGe, a non-invasive, high-throughput phenotyping system based on germination paper to quantify crop phenotypic diversity and plasticity of root traits under varying nutrient supply.Crossref | GoogleScholarGoogle Scholar |

Kirchgessner N, Liebisch F, Yu K, Pfeifer J, Friedli M, Hund A, Walter A (2017) The ETH field phenotyping platform FIP: a cable-suspended multi-sensor system. Functional Plant Biology 44, 154–168.
The ETH field phenotyping platform FIP: a cable-suspended multi-sensor system.Crossref | GoogleScholarGoogle Scholar |

Leucker M, Wahabzada M, Kersting K, Peter M, Beyer W, Steiner U, Mahlein AK, Oerke EC (2017) Hyperspectral imaging reveals the effect of sugar beet quantitative trait loci on Cercospora leaf spot resistance. Functional Plant Biology 44, 1–9.
Hyperspectral imaging reveals the effect of sugar beet quantitative trait loci on Cercospora leaf spot resistance.Crossref | GoogleScholarGoogle Scholar |

Negin B, Moshelion M (2017) The advantages of functional phenotyping in pre-field screening for drought-tolerant crops. Functional Plant Biology 44, 107–118.
The advantages of functional phenotyping in pre-field screening for drought-tolerant crops.Crossref | GoogleScholarGoogle Scholar |

Thomas S, Wahabzada M, Kuska M, Rascher U, Mahlein AK (2017) Observation of plant-pathogen intereaction by simultaneous hyperspectral imaging reflection and transmission measurements. Functional Plant Biology 44, 23–34.
Observation of plant-pathogen intereaction by simultaneous hyperspectral imaging reflection and transmission measurements.Crossref | GoogleScholarGoogle Scholar |

Virlet N, Sabermanesh K, Sadeghi-Tehran P, Hawkesford MJ (2017) Field Scanalyzer: An automated robotic field phenotyping platform for detailed crop monitoring. Functional Plant Biology 44, 143–153.
Field Scanalyzer: An automated robotic field phenotyping platform for detailed crop monitoring.Crossref | GoogleScholarGoogle Scholar |

Wedeking R, Mahlein AK, Steiner U, Oerke EC, Goldbach HE, Wimmer MA (2017) Osmotic adjustement of young sugar beets (Beta vulgaris) under progressive drought stress and subsequent rewatering assessed by metabolite analysis and infrared thermography. Functional Plant Biology 44, 119–133.
Osmotic adjustement of young sugar beets (Beta vulgaris) under progressive drought stress and subsequent rewatering assessed by metabolite analysis and infrared thermography.Crossref | GoogleScholarGoogle Scholar |

York LM, Nord EA, Lynch JP (2013) Integration of root phenes for soil resource acquisition. Frontiers in Plant Science 4, 355
Integration of root phenes for soil resource acquisition.Crossref | GoogleScholarGoogle Scholar |